IFT20

General Information

Gene Name       : IFT20
Gene ID             : ENSG00000109083.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: IFT20)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IFT20ENSG00000109083.1313.3613.5213.44ENCSR000AEF
HepG2IFT20ENSG00000109083.1314.7817.0215.90ENCSR985KAT
K562IFT20ENSG00000109083.1313.9912.7513.37ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IFT20 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IFT20 RNA is bound by 6 proteins.  







eCLIP assay for IFT20 is not avaliable on ENCORE database.





6 proteins are bound to IFT20 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172665571126655795-3'-UTR,CDS,intron-Distal4.7963210.75098HepG2U2AF2
chr172665545726655592-3'-UTR,intron-Distal4.043666.54227K562LIN28B
chr172665605326656134-3'-UTR,CDS,intron-Distal,intron-Proximal3.685136.77200HepG2U2AF2
chr172665571726655774-3'-UTR,CDS,intron-Distal3.395245.45334K562U2AF2
chr172665573726655796-3'-UTR,CDS,intron-Distal4.781966.14481K562U2AF1
chr172666237826662489-5'-UTR,intron-Distal,intron-Proximal3.551784.02244HepG2NCBP2
chr172666236626662425-5'-UTR,intron-Distal4.741474.54356K562DDX3X
chr172665736326657520-CDS,intron-Distal,intron-Proximal4.129324.75655HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IFT20 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IFT20 is not available on ENCORE database.

  • 65 RBPs can affect the levels of IFT20.  








The Knockdown/knockout RNA-Seq assay for IFT20 is not available on ENCORE database.





65 RBPs can affect the gene expression of IFT20 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IFT20ENSG00000109083.9145.56320228.92360-0.653203.112302.06020HepG2ADAR
IFT20ENSG00000109083.9240.57310390.32210-0.698203.217902.38860HepG2CNOT7
IFT20ENSG00000109083.9409.99930273.734900.582703.071202.42330HepG2DDX6
IFT20ENSG00000109083.9399.41790263.192000.601703.434902.77820HepG2EIF2S1
IFT20ENSG00000109083.9404.55760510.12070-0.334502.157301.61390HepG2ETF1
IFT20ENSG00000109083.9191.14380257.15660-0.428002.193501.64710HepG2HNRNPU
IFT20ENSG00000109083.9161.41090279.10570-0.790103.936502.46240HepG2HSPD1
IFT20ENSG00000109083.973.85870201.50380-1.448006.223704.54610HepG2NONO
IFT20ENSG00000109083.9349.52020271.000600.367002.074901.58870HepG2PTBP1
IFT20ENSG00000109083.9262.27160387.76760-0.564103.678003.00240HepG2PUF60
IFT20ENSG00000109083.9328.69640411.61550-0.324502.130701.59670HepG2PUM1
IFT20ENSG00000109083.9302.42360411.32540-0.443702.780702.10810HepG2PUM2
IFT20ENSG00000109083.9455.21480293.496600.633104.984304.18260HepG2QKI
IFT20ENSG00000109083.9308.34180199.877900.625302.192101.55830HepG2RAVER1
IFT20ENSG00000109083.9284.29880392.06140-0.463701.978801.30260HepG2RPS3A
IFT20ENSG00000109083.9166.51540267.08440-0.681604.697303.89570HepG2SMN1
IFT20ENSG00000109083.9387.62160203.596700.928806.272704.78470HepG2SMNDC1
IFT20ENSG00000109083.9240.90800382.84370-0.668305.734204.88040HepG2SRSF5
IFT20ENSG00000109083.9284.79530435.41620-0.612505.773104.93480HepG2SUCLG1
IFT20ENSG00000109083.9340.85720264.709800.364701.874001.39600HepG2TAF15
IFT20ENSG00000109083.9331.93700243.228500.448502.523201.72220HepG2TIA1
IFT20ENSG00000109083.9216.88430129.109600.748204.009203.09570HepG2UCHL5
IFT20ENSG00000109083.9372.36340200.163700.895405.401203.97170HepG2UPF2
IFT20ENSG00000109083.9290.32860209.821200.468402.829102.27790HepG2ZNF622
IFT20ENSG00000109083.91032.07690869.285600.247502.294501.76980K562AGGF1
IFT20ENSG00000109083.91245.46540955.275800.382603.481902.34830K562AKAP8
IFT20ENSG00000109083.91139.62400655.546400.797706.361005.53210K562AQR
IFT20ENSG00000109083.91183.14080949.115900.317902.396501.55140K562ATP5C1
IFT20ENSG00000109083.9359.26860261.938400.455702.822501.49330K562BCCIP
IFT20ENSG00000109083.9336.13010253.081100.409302.354701.47140K562BCLAF1
IFT20ENSG00000109083.9669.118701019.91110-0.608105.857303.68930K562DDX19B
IFT20ENSG00000109083.9308.32180220.267700.485102.217501.40030K562EFTUD2
IFT20ENSG00000109083.987.63000162.03840-0.886802.609501.63510K562EIF3A
IFT20ENSG00000109083.9167.46080280.72940-0.745404.901203.85760K562EIF3G
IFT20ENSG00000109083.9435.94450300.332800.537503.468701.66530K562FASTKD2
IFT20ENSG00000109083.9368.60920193.569700.929107.758206.26750K562FIP1L1
IFT20ENSG00000109083.9193.56680486.62940-1.3300010.853609.74070K562FXR1
IFT20ENSG00000109083.9319.80940200.952600.670303.931002.98940K562GPKOW
IFT20ENSG00000109083.9607.06210364.880800.734306.489105.32400K562GRSF1
IFT20ENSG00000109083.9785.96330483.373800.701202.925701.66490K562HNRNPA2B1
IFT20ENSG00000109083.9404.71530262.414500.625004.036503.08110K562HSPD1
IFT20ENSG00000109083.91217.58990959.896000.343003.381402.45870K562KIF1C
IFT20ENSG00000109083.9340.46610536.83620-0.657005.902304.65970K562MAGOH
IFT20ENSG00000109083.91208.24280918.900300.394803.457402.21180K562MAK16
IFT20ENSG00000109083.9415.52420291.090700.513403.005302.16420K562MTPAP
IFT20ENSG00000109083.9306.82570211.918500.533802.737701.32570K562PHF6
IFT20ENSG00000109083.9652.18360408.147100.676105.573403.24270K562PKM
IFT20ENSG00000109083.9388.78800219.765600.822906.487505.13750K562PPIG
IFT20ENSG00000109083.9823.73660502.658100.712502.840501.37280K562PPP1R8
IFT20ENSG00000109083.9311.61020194.612000.679003.736602.66380K562PSIP1
IFT20ENSG00000109083.9276.04930521.57540-0.9179010.844209.59230K562PTBP1
IFT20ENSG00000109083.91540.71810896.952200.7804010.511109.49930K562PUS1
IFT20ENSG00000109083.9878.54890520.163500.756102.956501.35290K562RBM39
IFT20ENSG00000109083.9385.47090526.27310-0.449202.822701.71890K562NELFE
IFT20ENSG00000109083.9317.43970218.309200.540002.219601.49210K562RPS19
IFT20ENSG00000109083.9123.81080220.19650-0.830704.312002.95000K562SAFB
IFT20ENSG00000109083.9656.36260386.660000.763302.833101.61080K562SF1
IFT20ENSG00000109083.9410.88590518.67810-0.336102.108701.36410K562SF3B4
IFT20ENSG00000109083.9492.15130284.642200.789904.075201.63920K562SMNDC1
IFT20ENSG00000109083.9733.49120444.064600.723902.849901.59930K562SNRNP200
IFT20ENSG00000109083.9383.53640511.32590-0.414902.606301.91750K562SRSF1
IFT20ENSG00000109083.9396.55600300.849500.398402.396601.31070K562SRSF7
IFT20ENSG00000109083.9967.16530531.164200.864503.965402.12740K562SUPT6H
IFT20ENSG00000109083.9133.00900247.90310-0.898305.964004.75060K562SYNCRIP
IFT20ENSG00000109083.9294.54380198.876100.566502.788401.83760K562TRIM56
IFT20ENSG00000109083.9324.97030226.339500.521702.694201.33660K562TRIP6
IFT20ENSG00000109083.9639.22870342.879300.898503.216302.44440K562UPF1
IFT20ENSG00000109083.9391.92590293.383300.417702.390801.57510K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IFT20 is not available on ENCORE database.





25 RBPs can affect the splicing of IFT20 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.358000.000070.03651excludedK562IGF2BP2
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.479000.000000.00003excludedK562SRSF1
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.353000.001360.04707excludedK562PRPF8
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.355000.000110.05933excludedK562TIA1
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.419000.000040.02756excludedK562XRN2
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.439000.000000.00002excludedHepG2U2AF1
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.481000.000000.01884excludedK562GEMIN5
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.548000.000010.00019excludedHepG2U2AF2
SEIFT20ENSG00000109083.9chr17-2665713626657254266561982665630226657468266575540.052000.000010.00028includedK562AQR
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.297000.000300.02899excludedHepG2DDX3X
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.480000.000000.00024excludedK562SUPV3L1
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.427000.000060.02902excludedK562UCHL5
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.311000.000180.06962excludedK562BUD13
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.389000.002030.09867excludedHepG2FTO
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.378000.000680.03839excludedK562EFTUD2
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.184000.002640.06492excludedHepG2SF3A3
SEIFT20ENSG00000109083.9chr17-266591712665920726658628266590132666236526662498-0.183000.000010.00168excludedK562HNRNPUL1
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.219000.000260.04509excludedK562SRSF7
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.298000.001260.04511excludedK562TARDBP
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.436000.000020.00838excludedHepG2DDX55
SEIFT20ENSG00000109083.9chr17-266591712665940826658427266590132666236526662504-0.345000.000220.00538excludedK562HNRNPC
A3SSIFT20ENSG00000109083.9chr17-2665619826656397266561982665630226657468266575540.142000.000020.01028longerHepG2QKI
A3SSIFT20ENSG00000109083.9chr17-2665619826656397266561982665630226657468266575540.085000.000370.03647longerHepG2HNRNPK
A3SSIFT20ENSG00000109083.9chr17-2665619826656397266561982665630226657468266575540.152000.000000.00026longerK562NPM1
A3SSIFT20ENSG00000109083.9chr17-2665619826656397266561982665630226657468266575540.166000.000000.00007longerHepG2NCBP2
A3SSIFT20ENSG00000109083.9chr17-2665619826656430266561982665630226657468266575540.195000.000000.00000longerK562AQR
A3SSIFT20ENSG00000109083.9chr17-2665888426659095266588842665901326659171266594080.179000.000000.00000longerK562AQR
A3SSIFT20ENSG00000109083.9chr17-266561982665639726656198266563022665746826657554-0.130000.000130.04009shorterK562TARDBP
A3SSIFT20ENSG00000109083.9chr17-266561982665639726656198266563022665746826657554-0.161000.000000.00000shorterK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for IFT20 is not avaliable on ENCORE database.