IFT20

General Information

Gene Name : IFT20
Gene ID : ENSG00000109083.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: IFT20)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	IFT20	ENSG00000109083.13	13.36	13.52	13.44	ENCSR000AEF
HepG2	IFT20	ENSG00000109083.13	14.78	17.02	15.90	ENCSR985KAT
K562	IFT20	ENSG00000109083.13	13.99	12.75	13.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for IFT20 is not avaliable on ENCORE database.

Proteins bound to RNA

IFT20 RNA is bound by 6 proteins.

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eCLIP assay for IFT20 is not avaliable on ENCORE database.

6 proteins are bound to IFT20 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	26655711	26655795	-	3'-UTR,CDS,intron-Distal	4.79632	10.75098	HepG2	U2AF2
chr17	26656053	26656134	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.68513	6.77200	HepG2	U2AF2
chr17	26655457	26655592	-	3'-UTR,intron-Distal	4.04366	6.54227	K562	LIN28B
chr17	26655737	26655796	-	3'-UTR,CDS,intron-Distal	4.78196	6.14481	K562	U2AF1
chr17	26655717	26655774	-	3'-UTR,CDS,intron-Distal	3.39524	5.45334	K562	U2AF2
chr17	26657363	26657520	-	CDS,intron-Distal,intron-Proximal	4.12932	4.75655	HepG2	PRPF8
chr17	26662366	26662425	-	5'-UTR,intron-Distal	4.74147	4.54356	K562	DDX3X
chr17	26662378	26662489	-	5'-UTR,intron-Distal,intron-Proximal	3.55178	4.02244	HepG2	NCBP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 8 of 8 entries

eCLIP assay for IFT20 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for IFT20 is not available on ENCORE database.
65 RBPs can affect the levels of IFT20.

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The Knockdown/knockout RNA-Seq assay for IFT20 is not available on ENCORE database.

65 RBPs can affect the gene expression of IFT20 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
IFT20	ENSG00000109083.9	193.56680	486.62940	-1.33000	10.85360	9.74070	K562	FXR1
IFT20	ENSG00000109083.9	276.04930	521.57540	-0.91790	10.84420	9.59230	K562	PTBP1
IFT20	ENSG00000109083.9	1540.71810	896.95220	0.78040	10.51110	9.49930	K562	PUS1
IFT20	ENSG00000109083.9	368.60920	193.56970	0.92910	7.75820	6.26750	K562	FIP1L1
IFT20	ENSG00000109083.9	1139.62400	655.54640	0.79770	6.36100	5.53210	K562	AQR
IFT20	ENSG00000109083.9	607.06210	364.88080	0.73430	6.48910	5.32400	K562	GRSF1
IFT20	ENSG00000109083.9	388.78800	219.76560	0.82290	6.48750	5.13750	K562	PPIG
IFT20	ENSG00000109083.9	284.79530	435.41620	-0.61250	5.77310	4.93480	HepG2	SUCLG1
IFT20	ENSG00000109083.9	240.90800	382.84370	-0.66830	5.73420	4.88040	HepG2	SRSF5
IFT20	ENSG00000109083.9	387.62160	203.59670	0.92880	6.27270	4.78470	HepG2	SMNDC1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 68 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for IFT20 is not available on ENCORE database.

25 RBPs can affect the splicing of IFT20 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	IFT20	ENSG00000109083.9	chr17	-	26659171	26659408	26658427	26659013	26662365	26662504	-0.47900	0.00000	0.00003	excluded	K562	SRSF1
SE	IFT20	ENSG00000109083.9	chr17	-	26659171	26659408	26658427	26659013	26662365	26662504	-0.43900	0.00000	0.00002	excluded	HepG2	U2AF1
SE	IFT20	ENSG00000109083.9	chr17	-	26659171	26659408	26658427	26659013	26662365	26662504	-0.48100	0.00000	0.01884	excluded	K562	GEMIN5
SE	IFT20	ENSG00000109083.9	chr17	-	26659171	26659408	26658427	26659013	26662365	26662504	-0.48000	0.00000	0.00024	excluded	K562	SUPV3L1
A3SS	IFT20	ENSG00000109083.9	chr17	-	26656198	26656397	26656198	26656302	26657468	26657554	0.15200	0.00000	0.00026	longer	K562	NPM1
A3SS	IFT20	ENSG00000109083.9	chr17	-	26656198	26656397	26656198	26656302	26657468	26657554	0.16600	0.00000	0.00007	longer	HepG2	NCBP2
A3SS	IFT20	ENSG00000109083.9	chr17	-	26656198	26656430	26656198	26656302	26657468	26657554	0.19500	0.00000	0.00000	longer	K562	AQR
A3SS	IFT20	ENSG00000109083.9	chr17	-	26658884	26659095	26658884	26659013	26659171	26659408	0.17900	0.00000	0.00000	longer	K562	AQR
A3SS	IFT20	ENSG00000109083.9	chr17	-	26656198	26656397	26656198	26656302	26657468	26657554	-0.16100	0.00000	0.00000	shorter	K562	SRSF1
SE	IFT20	ENSG00000109083.9	chr17	-	26659171	26659408	26658427	26659013	26662365	26662504	-0.54800	0.00001	0.00019	excluded	HepG2	U2AF2

Showing 1 to 10 of 29 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

IFT20

General Information

Functions

Localization

Domains (AlphaFold: IFT20)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for IFT20 is not avaliable on ENCORE database.

6 proteins are bound to IFT20 RNA:

eCLIP assay for IFT20 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for IFT20 is not available on ENCORE database.

65 RBPs can affect the gene expression of IFT20 :

The Knockdown/knockout RNA-Seq assay for IFT20 is not available on ENCORE database.

25 RBPs can affect the splicing of IFT20 :

The Knockdown/knockout RNA-Seq assay for IFT20 is not avaliable on ENCORE database.