HOXB3

General Information

Gene Name       : HOXB3
Gene ID             : ENSG00000120093.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXB3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXB3ENSG00000120093.112.883.042.96ENCSR000AEF
HepG2HOXB3ENSG00000120093.110.000.000.00ENCSR985KAT
K562HOXB3ENSG00000120093.1119.5415.8317.68ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXB3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXB3 RNA is bound by 32 proteins.  







eCLIP assay for HOXB3 is not avaliable on ENCORE database.





32 proteins are bound to HOXB3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174663294246632992-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.172993.31221K562U2AF1
chr174662969446629757-3'-UTR,CDS,intron-Distal,intron-Proximal4.163633.73926K562RBM15
chr174662640346626530-3'-UTR,intron-Distal5.7173618.90249K562ZC3H11A
chr174663294546632993-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.606685.64745K562U2AF2
chr174662982846629877-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.970123.15006K562RBM15
chr174665132446651358-5'-UTR,intron-Distal,intron-Proximal3.327357.19363K562U2AF2
chr174665581146655905-5'-UTR,intron-Distal,intron-Proximal3.428653.21873K562GTF2F1
chr174665135846651373-5'-UTR,intron-Distal3.271276.96990K562U2AF2
chr174665131546651374-5'-UTR,intron-Distal,intron-Proximal3.303783.23249K562SRSF1
chr174662850746628582-CDS,intron-Distal4.395796.77156K562AQR
chr174665877546658812-intron-Distal5.4259211.65716K562DROSHA
chr174665940046659493-intron-Distal3.550393.15856K562FUS
chr174665886846658927-intron-Distal3.276453.73797K562CSTF2T
chr174665386946653895-3'-UTR,intron-Distal3.515334.24159K562RBM15
chr174664849646648557-intron-Distal4.129614.33692K562NONO
chr174665385946653934-3'-UTR,intron-Distal3.322776.83930K562FAM120A
chr174667937546679434-intron-Distal4.309904.48497K562NONO
chr174665726546657283-5'-UTR,intron-Distal6.0340910.58144K562DGCR8
chr174662937846629389-intron-Distal,intron-Proximal3.734826.51619K562AQR
chr174664591946646024-intron-Distal5.7957411.85065K562TARDBP
chr174665917346659197-intron-Distal4.990364.93084K562DGCR8
chr174665700746657103-5'-UTR,intron-Distal4.5424414.61943K562DROSHA
chr174665722746657250-5'-UTR,intron-Distal5.840967.64819K562DROSHA
chr174667807346678151-intron-Distal3.680805.35441K562HNRNPL
chr174665397546654019-3'-UTR,intron-Distal3.999755.28523K562DDX51
chr174667821246678382-intron-Distal3.6167012.43428K562AGGF1
chr174663247946632586-intron-Distal6.8975822.91239K562PTBP1
chr174665372746653790-3'-UTR,intron-Distal3.052986.35635K562UCHL5
chr174668171446681798-intron-Distal,intron-Proximal4.188447.14028K562TIA1
chr174664584546645907-intron-Distal4.441704.03833K562HNRNPM
chr174665825846658340-intron-Distal6.0753210.58144K562DGCR8
chr174667762146677686-intron-Distal4.050874.04407K562HNRNPL
chr174665350846653562-3'-UTR,intron-Distal4.4159816.99650K562RBM15
chr174665925846659327-intron-Distal3.640974.94042K562NONO
chr174665936946659461-intron-Distal4.553186.16396K562NONO
chr174662930746629378-intron-Distal,intron-Proximal5.7512720.20376K562AQR
chr174666990646669969-intron-Distal5.143396.40247K562SF3B4
chr174665318046653223-3'-UTR,intron-Distal3.364093.37083K562UPF1
chr174665369146653755-3'-UTR,intron-Distal4.7779417.30914K562RBM15
chr174665643846656515-5'-UTR,intron-Distal7.2151921.91174K562DROSHA
chr174665583046655896-5'-UTR,intron-Distal,intron-Proximal5.824218.67963K562DGCR8
chr174665913946659209-intron-Distal3.606225.29044K562CSTF2T
chr174665643946656539-5'-UTR,intron-Distal3.700663.80752K562AKAP8L
chr174665914846659218-intron-Distal3.680396.10049K562TIA1
chr174666217246662272-intron-Distal4.388065.18111K562CSTF2T
chr174665367546653689-3'-UTR,intron-Distal5.5489232.99335K562RBM15
chr174665297746653027-3'-UTR,intron-Distal,intron-Proximal3.6603911.84482K562TIA1
chr174665700846657087-5'-UTR,intron-Distal5.4205914.05971K562DGCR8
chr174663260146632705-intron-Distal,intron-Proximal5.5376322.15177K562PTBP1
chr174665538046655415-CDS,intron-Distal4.709064.19577K562DGCR8
chr174665409546654125-CDS,intron-Distal3.371278.10769K562RBM15
chr174664132446641419-intron-Distal3.491413.30889K562GTF2F1
chr174665736346657425-5'-UTR,intron-Distal6.5601416.34237K562DGCR8
chr174664857346648662-intron-Distal3.094413.38183K562NONO
chr174664131446641390-intron-Distal4.725105.85370K562CSTF2T
chr174668006946680142-intron-Distal4.974825.42636K562NONO
chr174665943146659482-intron-Distal5.2729310.12417K562DROSHA
chr174665728746657328-5'-UTR,intron-Distal6.8701213.47900K562DROSHA
chr174665750946657574-intron-Distal,intron-Proximal3.255373.77567K562NONO
chr174665928546659294-intron-Distal4.496135.59743K562DROSHA
chr174665479946654850-intron-Distal5.007678.51654K562DROSHA
chr174663857046638674-intron-Distal4.196216.02361K562EIF4G2
chr174665876846658837-intron-Distal5.7676610.58144K562DGCR8
chr174663593846636127-intron-Distal3.776034.52780K562HNRNPK
chr174665914946659225-intron-Distal5.2151915.00318K562DROSHA
chr174665808946658132-intron-Distal5.098977.71942K562DROSHA
chr174667962046679666-intron-Distal4.170413.30664K562NONO
chr174665723146657265-5'-UTR,intron-Distal8.4220779.73008K562DGCR8
chr174668003246680118-intron-Distal4.466144.73785K562TIA1
chr174665520446655226-CDS,intron-Distal4.053548.65427K562AQR
chr174665582646655891-5'-UTR,intron-Distal,intron-Proximal4.7839415.87985K562DROSHA
chr174665412546654172-CDS,intron-Distal4.2562212.20960K562RBM15
chr174665762646657664-intron-Distal6.5964415.15999K562DROSHA
chr174665887346658919-intron-Distal5.463578.67963K562DGCR8
chr174667949046679553-intron-Distal4.683524.48497K562NONO
chr174665940546659446-intron-Distal4.186525.25288K562DGCR8
chr174665710746657152-5'-UTR,intron-Distal4.069964.35288K562DGCR8
chr174665728346657330-5'-UTR,intron-Distal5.9446118.21481K562DGCR8
chr174665433746654421-CDS,intron-Distal3.540077.16774K562AQR
chr174667904946679100-intron-Distal4.108623.36882K562SLTM
chr174665397046654021-3'-UTR,intron-Distal3.418918.48345K562RBM15
chr174665363646653675-3'-UTR,intron-Distal5.8003939.35108K562RBM15
chr174665764746657666-intron-Distal4.331276.67719K562DGCR8
chr174667528046675341-CDS,intron-Distal3.865913.90201K562SLTM
chr174668014246680203-intron-Distal3.449953.80158K562NONO
chr174665398946653997-3'-UTR,intron-Distal3.661734.38394K562DROSHA
chr174665397346654018-3'-UTR,intron-Distal3.091573.95743K562AKAP8L
chr174663259146632686-intron-Distal,intron-Proximal3.613234.51915K562MATR3
chr174665366746653763-3'-UTR,intron-Distal4.088324.47351K562GRWD1
chr174665928146659310-intron-Distal4.972104.19577K562DGCR8
chr174665879546658847-intron-Distal3.972453.82910K562NONO
chr174667911546679167-intron-Distal3.978753.30664K562NONO
chr174665396546654027-3'-UTR,intron-Distal4.1855812.23371K562GTF2F1
chr174667823746678332-intron-Distal4.806327.01052K562HNRNPL
chr174665357346653665-3'-UTR,intron-Distal3.153053.45995K562IGF2BP2
chr174665722346657231-5'-UTR,intron-Distal8.0962467.93834K562DGCR8
chr174665517946655204-intron-Distal4.858799.56266K562AQR
chr174665385646653909-3'-UTR,intron-Distal4.450684.46422K562UPF1
chr174663328446633363-intron-Distal4.665886.23114K562TARDBP
chr174667961246679659-intron-Distal3.043984.02149K562SLTM
chr174665643546656507-5'-UTR,intron-Distal6.1950612.11094K562DGCR8
chr174665584846655890-5'-UTR,intron-Distal,intron-Proximal3.397663.12654K562SLTM
chr174665913846659213-intron-Distal3.652153.80158K562NONO
chr174665889146658946-intron-Distal5.5926312.70952K562DROSHA
chr174665394546654026-3'-UTR,intron-Distal4.5770912.33405K562DDX6
chr174665289446652965-3'-UTR,intron-Distal,intron-Proximal3.8510831.02690K562PUM2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXB3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXB3 is not available on ENCORE database.

  • 52 RBPs can affect the levels of HOXB3.  








The Knockdown/knockout RNA-Seq assay for HOXB3 is not available on ENCORE database.





52 RBPs can affect the gene expression of HOXB3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXB3ENSG00000120093.7924.913001216.41660-0.395203.099801.79570K562ABCF1
HOXB3ENSG00000120093.7922.574001685.27520-0.8692023.1758021.64610K562AGGF1
HOXB3ENSG00000120093.7423.96910585.97740-0.466904.352202.41960K562AKAP1
HOXB3ENSG00000120093.71504.461701851.81960-0.299702.417301.50800K562AKAP8
HOXB3ENSG00000120093.71089.212601753.59470-0.687009.779908.45670K562AKAP8L
HOXB3ENSG00000120093.71493.132301839.92290-0.301303.284902.28280K562ATP5C1
HOXB3ENSG00000120093.7457.76230595.52850-0.379602.761601.45130K562BCCIP
HOXB3ENSG00000120093.71333.49460935.725600.511002.361201.56240K562BOP1
HOXB3ENSG00000120093.71090.977201828.68900-0.7452013.7096011.65100K562CELF1
HOXB3ENSG00000120093.71068.815501604.86240-0.5864011.8137010.56850K562DDX47
HOXB3ENSG00000120093.71117.93250727.944500.618809.592308.37660K562EIF2S2
HOXB3ENSG00000120093.7383.08390502.49900-0.391502.578101.80900K562EIF3G
HOXB3ENSG00000120093.71216.134301487.30350-0.290402.896501.93690K562EIF4G2
HOXB3ENSG00000120093.7591.38740874.38550-0.564205.275804.07870K562FIP1L1
HOXB3ENSG00000120093.71285.373501012.300700.344402.563801.74140K562FMR1
HOXB3ENSG00000120093.71094.60510857.986900.351302.192701.38310K562FTO
HOXB3ENSG00000120093.7503.94990645.03650-0.356102.796402.18830K562FXR1
HOXB3ENSG00000120093.7712.266301151.97560-0.693608.571506.66180K562GLRX3
HOXB3ENSG00000120093.7474.20450804.12950-0.761908.228006.45990K562HNRNPA1
HOXB3ENSG00000120093.7812.94260639.870000.345302.420401.85730K562HNRNPC
HOXB3ENSG00000120093.7796.015001450.32900-0.8655015.1550012.60700K562HNRNPL
HOXB3ENSG00000120093.7535.04990719.18550-0.426702.506801.62310K562HNRNPM
HOXB3ENSG00000120093.7509.71960890.58250-0.805009.811808.14460K562HNRNPU
HOXB3ENSG00000120093.71243.890301861.03940-0.581207.353905.84710K562KIF1C
HOXB3ENSG00000120093.7811.22330570.434200.507904.402102.39990K562LSM11
HOXB3ENSG00000120093.7542.82730685.67220-0.337002.308801.47250K562MATR3
HOXB3ENSG00000120093.71591.292002084.82900-0.389704.449103.24320K562MBNL1
HOXB3ENSG00000120093.7956.543901211.17240-0.340503.561202.65040K562MTPAP
HOXB3ENSG00000120093.7807.038301461.31090-0.856608.494206.60900K562NAA15
HOXB3ENSG00000120093.7999.934101345.60750-0.428406.422905.34990K562NSUN2
HOXB3ENSG00000120093.7868.89230629.927700.463903.193701.62590K562NUSAP1
HOXB3ENSG00000120093.7890.60690624.669000.511604.780102.83720K562PHF6
HOXB3ENSG00000120093.7758.78510992.58750-0.387502.870802.03420K562PPIG
HOXB3ENSG00000120093.7833.08410573.695000.538105.055303.78360K562PSIP1
HOXB3ENSG00000120093.7437.62340667.55370-0.609206.199205.23830K562PTBP1
HOXB3ENSG00000120093.71408.020401726.01150-0.293802.675901.62990K562PUM1
HOXB3ENSG00000120093.7749.248801739.16080-1.2149024.1557022.55600K562PUS1
HOXB3ENSG00000120093.71126.114101694.48710-0.589509.775108.68660K562RBM15
HOXB3ENSG00000120093.7335.06130462.83080-0.466102.339201.59110K562RPS19
HOXB3ENSG00000120093.7262.43200464.58110-0.824005.089203.28360K562RRP9
HOXB3ENSG00000120093.7975.718901327.94050-0.444705.775004.63030K562SF3A3
HOXB3ENSG00000120093.7782.00640496.127400.656406.506804.74250K562SRFBP1
HOXB3ENSG00000120093.7930.436801360.51890-0.548205.930904.62910K562SRPK2
HOXB3ENSG00000120093.7825.84850625.829700.400002.937501.84360K562SRSF4
HOXB3ENSG00000120093.7637.98060789.56620-0.307502.407201.31890K562SRSF7
HOXB3ENSG00000120093.7495.93230722.47970-0.542804.375803.33700K562SYNCRIP
HOXB3ENSG00000120093.7788.64850638.876400.303702.016401.32480K562TIA1
HOXB3ENSG00000120093.7965.319601240.41790-0.361702.893101.59530K562TROVE2
HOXB3ENSG00000120093.71687.185001426.785200.241802.048801.42470K562UPF1
HOXB3ENSG00000120093.71025.723301376.15780-0.424002.807301.59700K562UTP3
HOXB3ENSG00000120093.7969.489801220.84030-0.332602.642901.78500K562WDR3
HOXB3ENSG00000120093.7860.948501256.57460-0.545505.940604.59920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXB3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXB3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXB3 is not avaliable on ENCORE database.