HMGN4

General Information

Gene Name       : HMGN4
Gene ID             : ENSG00000182952.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HMGN4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMGN4ENSG00000182952.462.3559.4660.91ENCSR000AEF
HepG2HMGN4ENSG00000182952.439.6655.1647.41ENCSR985KAT
K562HMGN4ENSG00000182952.470.0569.6469.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HMGN4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HMGN4 RNA is bound by 12 proteins.  







eCLIP assay for HMGN4 is not avaliable on ENCORE database.





12 proteins are bound to HMGN4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62654592826545978+3'-UTR3.582584.40891K562FAM120A
chr62654576826545856+3'-UTR3.947215.18694K562CPEB4
chr62654570926545760+3'-UTR6.5314562.51678K562PUM2
chr62654616726546279+3'-UTR3.3393113.98565K562UPF1
chr62654580126545872+3'-UTR4.5773412.73354K562TIA1
chr62654535326545412+3'-UTR,intron-Proximal3.4066912.83227K562DDX3X
chr62654579626545903+3'-UTR3.2543113.53214K562UPF1
chr62654593026545987+3'-UTR4.120467.08557K562LIN28B
chr62654567326545709+3'-UTR,CDS3.5620710.06874K562PUM2
chr62653868426538731+5'-UTR,intron-Proximal4.8374818.75036K562DDX3X
chr62653863326538684+5'-UTR5.1049322.35516K562DDX3X
chr62653870026538766+5'-UTR,intron-Proximal3.469283.71591HepG2PRPF8
chr62654254726542698+intron-Distal5.234767.97897HepG2QKI
chr62654218826542233+intron-Distal4.230423.90026K562KHSRP
chr62654213626542185+intron-Distal3.805263.66668K562KHSRP
chr62654486126544960+intron-Distal3.309204.01234HepG2HNRNPL
chr62654223326542293+intron-Distal3.515645.32884K562KHSRP
chr62653952526539591+intron-Distal3.799233.03357HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HMGN4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HMGN4 is not available on ENCORE database.

  • 84 RBPs can affect the levels of HMGN4.  








The Knockdown/knockout RNA-Seq assay for HMGN4 is not available on ENCORE database.





84 RBPs can affect the gene expression of HMGN4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HMGN4ENSG00000182952.4537.20360711.45380-0.405302.616001.64450HepG2ADAR
HMGN4ENSG00000182952.4654.53370841.15700-0.361903.562102.70470HepG2AKAP8L
HMGN4ENSG00000182952.4427.14010681.18490-0.673304.445003.25620HepG2BCCIP
HMGN4ENSG00000182952.4512.37420665.31240-0.376802.615001.86490HepG2CALR
HMGN4ENSG00000182952.4984.14760774.308800.345904.173703.17370HepG2DDX19B
HMGN4ENSG00000182952.4470.50060754.68210-0.681705.015004.12990HepG2DDX21
HMGN4ENSG00000182952.41070.303001433.91780-0.421902.095701.54320HepG2DDX3X
HMGN4ENSG00000182952.41060.50570669.733400.663005.584604.53100HepG2DDX55
HMGN4ENSG00000182952.4493.06270710.07920-0.526206.855905.89510HepG2DNAJC2
HMGN4ENSG00000182952.4460.07770667.38050-0.536603.591802.55040HepG2EEF2
HMGN4ENSG00000182952.4700.573501184.13570-0.757204.599003.84520HepG2EIF2S1
HMGN4ENSG00000182952.4835.934801308.76380-0.646703.812603.06750HepG2EIF4A3
HMGN4ENSG00000182952.4734.035301273.97000-0.795405.358004.42240HepG2EIF4B
HMGN4ENSG00000182952.4949.129701320.01990-0.475902.303701.66970HepG2FXR1
HMGN4ENSG00000182952.4726.725701224.75810-0.753004.898004.02420HepG2G3BP1
HMGN4ENSG00000182952.4933.562201299.91610-0.477602.711101.83040HepG2G3BP2
HMGN4ENSG00000182952.4353.95400482.38220-0.446602.649701.77370HepG2GEMIN5
HMGN4ENSG00000182952.4502.35750820.04970-0.707004.733803.28800HepG2GRSF1
HMGN4ENSG00000182952.4473.40850723.25850-0.611405.335904.47990HepG2HNRNPA1
HMGN4ENSG00000182952.41420.863301120.839600.342103.813902.74310HepG2HNRNPA2B1
HMGN4ENSG00000182952.41283.826401111.050200.208401.966301.38590HepG2HNRNPL
HMGN4ENSG00000182952.4307.99520451.19800-0.550903.222802.54970HepG2HNRNPLL
HMGN4ENSG00000182952.4671.91190799.17560-0.250201.905801.39360HepG2HNRNPU
HMGN4ENSG00000182952.4836.764101245.02750-0.573303.267502.53930HepG2IGF2BP2
HMGN4ENSG00000182952.4494.60000816.33090-0.7229013.5877012.09610HepG2ILF2
HMGN4ENSG00000182952.4881.955101252.12110-0.505602.764301.76230HepG2KHSRP
HMGN4ENSG00000182952.4612.822101154.48440-0.913703.878702.89240HepG2LARP4
HMGN4ENSG00000182952.4755.830801320.47860-0.804905.729104.79760HepG2MAGOH
HMGN4ENSG00000182952.4880.436501327.94530-0.592903.649302.93370HepG2MATR3
HMGN4ENSG00000182952.4715.109301359.28770-0.926606.696005.72940HepG2NCBP2
HMGN4ENSG00000182952.4854.663301210.81860-0.502602.579701.87990HepG2PABPC4
HMGN4ENSG00000182952.41030.007601274.93690-0.307803.557102.88750HepG2PCBP1
HMGN4ENSG00000182952.4427.64430579.67690-0.438803.796602.90370HepG2PRPF4
HMGN4ENSG00000182952.4888.476401297.24000-0.546009.178308.29820HepG2PTBP1
HMGN4ENSG00000182952.4880.603301154.44580-0.390603.509002.84840HepG2PUF60
HMGN4ENSG00000182952.4882.734701224.58500-0.472205.569204.63090HepG2PUM2
HMGN4ENSG00000182952.4700.50710852.75970-0.283702.541201.94400HepG2PUS1
HMGN4ENSG00000182952.4471.904801405.06220-1.5741048.5903046.60030HepG2QKI
HMGN4ENSG00000182952.41041.01230775.181800.425304.074903.05740HepG2RBM15
HMGN4ENSG00000182952.41997.314001323.405500.5937010.749009.87420HepG2RBM22
HMGN4ENSG00000182952.41108.556001443.75010-0.381105.056104.36110HepG2NELFE
HMGN4ENSG00000182952.41072.224201344.57270-0.326503.930203.21270HepG2RECQL
HMGN4ENSG00000182952.4380.62720527.16260-0.469903.183902.53100HepG2RPS19
HMGN4ENSG00000182952.4446.01530660.42710-0.566303.001602.29810HepG2SF3A3
HMGN4ENSG00000182952.4833.508401350.69460-0.6964014.0926012.91810HepG2SF3B4
HMGN4ENSG00000182952.4534.65390829.95830-0.6344010.469209.34880HepG2SMN1
HMGN4ENSG00000182952.4829.86920496.913900.739802.175201.48610HepG2SNRNP70
HMGN4ENSG00000182952.41789.567901494.699600.259702.959602.44700HepG2SRFBP1
HMGN4ENSG00000182952.41029.530801409.79180-0.453507.087506.41350HepG2SRSF1
HMGN4ENSG00000182952.4727.38180480.548000.597903.819102.62420HepG2SRSF3
HMGN4ENSG00000182952.4874.400501139.79930-0.382404.792904.00630HepG2SRSF5
HMGN4ENSG00000182952.4886.153701297.68640-0.550309.949509.09230HepG2SSB
HMGN4ENSG00000182952.4111.18260439.79970-1.9839026.2693024.48230HepG2TARDBP
HMGN4ENSG00000182952.4453.79580746.62830-0.718302.996701.88720HepG2TBRG4
HMGN4ENSG00000182952.4432.68770776.53590-0.8437012.0649011.14910HepG2TIAL1
HMGN4ENSG00000182952.4589.78600783.49100-0.409704.547503.86090HepG2TRIM56
HMGN4ENSG00000182952.4252.70820585.69670-1.2127021.8498020.25750HepG2UPF1
HMGN4ENSG00000182952.4874.52950565.469000.629009.169708.18400HepG2UTP3
HMGN4ENSG00000182952.4282.57190644.15600-1.1888024.7723023.54500HepG2ZNF622
HMGN4ENSG00000182952.4839.216301262.36990-0.589006.852706.01700K562AGGF1
HMGN4ENSG00000182952.41851.351401313.567900.495005.856804.88400K562AKAP8L
HMGN4ENSG00000182952.41771.056901378.276700.361604.702303.47590K562ATP5C1
HMGN4ENSG00000182952.41144.690501359.48700-0.248102.622301.69080K562BCLAF1
HMGN4ENSG00000182952.4344.30810468.62260-0.444702.662301.63570K562CCAR1
HMGN4ENSG00000182952.41029.575401286.65160-0.321602.924101.67770K562DDX21
HMGN4ENSG00000182952.41768.411501413.400700.323204.110403.01360K562DKC1
HMGN4ENSG00000182952.4771.921501176.73750-0.608304.424802.77140K562EEF2
HMGN4ENSG00000182952.41087.559201336.79360-0.297703.184701.87630K562EIF2S1
HMGN4ENSG00000182952.41025.778201322.11890-0.366104.005303.05690K562EIF3G
HMGN4ENSG00000182952.41009.890701271.50490-0.332302.567401.77750K562EIF4A3
HMGN4ENSG00000182952.4865.690801145.04840-0.403504.580403.02840K562EIF4B
HMGN4ENSG00000182952.42311.960702674.63570-0.210202.542601.63750K562EIF4G2
HMGN4ENSG00000182952.41126.441201322.30970-0.231301.980101.45140K562FXR1
HMGN4ENSG00000182952.4910.823301172.14800-0.363903.718602.40590K562GLRX3
HMGN4ENSG00000182952.41441.866002071.56230-0.522806.745705.55800K562GRSF1
HMGN4ENSG00000182952.41287.469801637.43440-0.346903.434402.23360K562HNRNPA1
HMGN4ENSG00000182952.4657.468701006.06000-0.613706.787505.89160K562HNRNPC
HMGN4ENSG00000182952.41171.82280825.916500.504603.984202.85310K562HNRNPM
HMGN4ENSG00000182952.42060.922701361.165800.598307.564606.26540K562HSPD1
HMGN4ENSG00000182952.41851.217001393.972200.409204.225403.17600K562KIF1C
HMGN4ENSG00000182952.41856.782101561.608100.249702.145001.36010K562MBNL1
HMGN4ENSG00000182952.4583.400401232.37080-1.0789029.3370027.15420K562MTPAP
HMGN4ENSG00000182952.41757.361901094.578700.682903.078002.13980K562NAA15
HMGN4ENSG00000182952.41198.824401369.21870-0.191701.987301.34200K562NSUN2
HMGN4ENSG00000182952.4800.095501030.98980-0.365802.275701.52140K562PCBP3
HMGN4ENSG00000182952.41426.820901139.898100.323802.417201.65340K562PPIG
HMGN4ENSG00000182952.41348.103001618.80300-0.264002.160101.56150K562PTBP1
HMGN4ENSG00000182952.43994.667503104.557700.363603.608202.38030K562PUM1
HMGN4ENSG00000182952.42509.331801302.593600.9458017.5348016.20740K562PUS1
HMGN4ENSG00000182952.42120.018101269.268500.7400010.854009.70260K562RBM15
HMGN4ENSG00000182952.4609.72950780.14010-0.355602.213401.31730K562SRFBP1
HMGN4ENSG00000182952.41148.216901384.29240-0.269803.060002.08050K562SRPK2
HMGN4ENSG00000182952.4614.15830903.25650-0.556502.420801.44600K562SRSF4
HMGN4ENSG00000182952.4764.111001071.61190-0.487903.396102.25900K562SUPV3L1
HMGN4ENSG00000182952.41204.667401606.18410-0.415003.565602.75900K562TARDBP
HMGN4ENSG00000182952.41732.364201262.005300.456903.575202.29810K562U2AF1
HMGN4ENSG00000182952.41944.767901320.800700.558102.631301.37820K562UTP18
HMGN4ENSG00000182952.42136.718502899.15570-0.440205.133503.90010K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HMGN4 is not available on ENCORE database.





8 RBPs can affect the splicing of HMGN4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHMGN4ENSG00000182952.4chr6+2654306726543206265386322653872926545354265464820.371000.000000.00000includedHepG2U2AF1
SEHMGN4ENSG00000182952.4chr6+2654012826540254265386652653872926545354265464820.057000.000000.00035includedK562PUM1
SEHMGN4ENSG00000182952.4chr6+2654306726543206265386322653872926545354265464820.497000.000000.00000includedHepG2U2AF2
SEHMGN4ENSG00000182952.4chr6+2654012826540254265386652653872926545354265464820.066000.000040.00269includedK562FXR1
SEHMGN4ENSG00000182952.4chr6+2654306726543206265386322653872926545354265464820.084000.000550.03871includedHepG2FTO
SEHMGN4ENSG00000182952.4chr6+2654012826540254265386652653872926545354265464820.136000.000320.00889includedK562U2AF1
SEHMGN4ENSG00000182952.4chr6+2654012826540254265386652653872926545354265464820.218000.000000.00010includedK562U2AF2
SEHMGN4ENSG00000182952.4chr6+2654012826540254265386652653872926545354265464820.090000.000360.02107includedK562HNRNPK
SEHMGN4ENSG00000182952.4chr6+265401282654025426538665265387292654535426546482-0.138000.000690.03219excludedHepG2HNRNPU
SEHMGN4ENSG00000182952.4chr6+265401282654025426538665265387292654535426546482-0.143000.000350.01671excludedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HMGN4 is not avaliable on ENCORE database.