GNL1

General Information

Gene Name : GNL1
Gene ID : ENSG00000204590.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GNL1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GNL1	ENSG00000204590.12	24.41	27.38	25.89	ENCSR000AEF
HepG2	GNL1	ENSG00000204590.12	48.27	43.28	45.78	ENCSR985KAT
K562	GNL1	ENSG00000204590.12	68.68	47.46	58.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GNL1 is not avaliable on ENCORE database.

Proteins bound to RNA

GNL1 RNA is bound by 18 proteins.

eCLIP assay for GNL1 is not avaliable on ENCORE database.

18 proteins are bound to GNL1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	30513754	30513821	-	3'-UTR,intron-Distal	4.35151	5.38549	K562	PUM2
chr6	30523942	30524061	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.72201	8.12116	K562	DDX3X
chr6	30523789	30523906	-	5'-UTR,intron-Distal,intron-Proximal	4.96454	11.42662	K562	AQR
chr6	30520313	30520428	-	CDS,intron-Distal,intron-Proximal	3.61320	4.56702	HepG2	SRSF1
chr6	30515127	30515167	-	CDS,intron-Distal,intron-Proximal	5.16964	7.35950	HepG2	PPIG
chr6	30522648	30522712	-	CDS,intron-Distal,intron-Proximal	3.51845	4.06013	K562	PRPF8
chr6	30520263	30520439	-	CDS,intron-Distal,intron-Proximal	3.51390	8.52133	HepG2	G3BP1
chr6	30522831	30522952	-	CDS,intron-Distal,intron-Proximal	3.15961	6.02430	HepG2	PPIG
chr6	30515019	30515052	-	CDS,intron-Distal,intron-Proximal	4.12454	6.36347	HepG2	PPIG
chr6	30520288	30520371	-	CDS,intron-Distal,intron-Proximal	3.44233	4.88141	HepG2	GRWD1
chr6	30514548	30514567	-	CDS,intron-Distal	5.70087	12.57080	K562	LIN28B
chr6	30520892	30520951	-	CDS,intron-Distal,intron-Proximal	3.72345	4.77136	HepG2	PPIG
chr6	30523433	30523503	-	CDS,intron-Distal,intron-Proximal	3.26714	4.30396	K562	UCHL5
chr6	30520228	30520298	-	CDS,intron-Distal,intron-Proximal	3.33159	4.85828	HepG2	BCLAF1
chr6	30522831	30522895	-	CDS,intron-Distal,intron-Proximal	4.11366	6.29174	K562	ZNF622
chr6	30523477	30523500	-	CDS,intron-Distal,intron-Proximal	3.61169	5.30777	HepG2	PPIG
chr6	30520410	30520439	-	CDS,intron-Distal,intron-Proximal	4.52688	4.70478	HepG2	BCLAF1
chr6	30520354	30520438	-	CDS,intron-Distal,intron-Proximal	4.30707	11.27084	HepG2	PPIG
chr6	30520860	30520918	-	CDS,intron-Distal,intron-Proximal	4.99134	6.71715	HepG2	BCLAF1
chr6	30513893	30513950	-	CDS,intron-Distal	4.17722	3.74262	HepG2	LARP4
chr6	30520193	30520284	-	CDS,intron-Distal,intron-Proximal	3.56894	11.13244	HepG2	PRPF8
chr6	30513878	30513958	-	CDS,intron-Distal	3.28442	3.97184	HepG2	G3BP1
chr6	30514493	30514548	-	CDS,intron-Distal	6.00724	16.39907	K562	LIN28B
chr6	30513901	30514093	-	CDS,intron-Distal	4.59687	11.53552	HepG2	PABPN1
chr6	30520216	30520289	-	CDS,intron-Distal,intron-Proximal	3.12598	7.50376	HepG2	PPIG
chr6	30515240	30515321	-	CDS,intron-Distal,intron-Proximal	4.29954	11.71981	HepG2	U2AF2
chr6	30515247	30515319	-	CDS,intron-Distal,intron-Proximal	3.87957	3.23561	HepG2	U2AF1
chr6	30520858	30520892	-	CDS,intron-Distal,intron-Proximal	5.14410	5.27053	HepG2	PPIG
chr6	30514936	30514986	-	CDS,intron-Distal,intron-Proximal	4.21979	3.19682	HepG2	PABPN1
chr6	30514508	30514590	-	CDS,intron-Distal	4.57398	6.07680	HepG2	LIN28B
chr6	30522633	30522697	-	CDS,intron-Distal,intron-Proximal	4.02358	5.37538	K562	ZNF622
chr6	30514070	30514122	-	CDS,intron-Distal	4.66263	3.62536	K562	AQR
chr6	30523432	30523477	-	CDS,intron-Distal	3.22585	6.00788	HepG2	PPIG
chr6	30523338	30523398	-	CDS,intron-Distal	3.04229	3.00343	HepG2	GRWD1
chr6	30514584	30514631	-	CDS,intron-Distal,intron-Proximal	3.35370	6.82255	HepG2	U2AF2
chr6	30521704	30521827	-	intron-Distal	3.34378	4.78027	HepG2	HNRNPL
chr6	30514373	30514472	-	intron-Distal,intron-Proximal	5.62613	8.34710	K562	AQR
chr6	30521691	30521811	-	intron-Distal	4.36414	5.60352	K562	HNRNPL
chr6	30517365	30517531	-	intron-Distal	4.39905	4.97094	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for GNL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GNL1 is not available on ENCORE database.
54 RBPs can affect the levels of GNL1.

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

54 RBPs can affect the gene expression of GNL1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GNL1	ENSG00000204590.8	1896.82150	1434.97810	0.40250	7.27430	6.38490	HepG2	ACO1
GNL1	ENSG00000204590.8	2222.22090	1714.35200	0.37420	2.41390	1.91350	HepG2	AKAP1
GNL1	ENSG00000204590.8	1398.32720	895.79760	0.64240	7.72620	6.78800	HepG2	BOP1
GNL1	ENSG00000204590.8	1718.97350	1347.59740	0.35110	2.26270	1.55940	HepG2	CIRBP
GNL1	ENSG00000204590.8	1766.19060	1327.12440	0.41220	7.71560	6.44010	HepG2	DDX19B
GNL1	ENSG00000204590.8	1637.05030	1198.92600	0.44930	2.93000	2.13700	HepG2	DDX55
GNL1	ENSG00000204590.8	1129.65070	871.43110	0.37430	2.50740	1.64270	HepG2	EIF3D
GNL1	ENSG00000204590.8	2826.10220	2425.15850	0.22060	2.43090	1.86050	HepG2	ETF1
GNL1	ENSG00000204590.8	1843.92610	1404.74660	0.39240	2.49000	1.75580	HepG2	FIP1L1
GNL1	ENSG00000204590.8	2189.81410	1512.37620	0.53390	5.29780	4.36060	HepG2	FXR1
GNL1	ENSG00000204590.8	1567.90100	1180.82940	0.40890	3.11770	2.03580	HepG2	GNB2L1
GNL1	ENSG00000204590.8	1467.68010	1069.29350	0.45680	4.38380	3.52580	HepG2	HNRNPC
GNL1	ENSG00000204590.8	1910.49560	1421.09110	0.42680	3.91410	3.09680	HepG2	HNRNPK
GNL1	ENSG00000204590.8	1362.27190	1062.22570	0.35880	4.69520	3.92280	HepG2	HNRNPU
GNL1	ENSG00000204590.8	1212.16990	1512.90720	-0.31970	1.93450	1.38060	HepG2	MAGOH
GNL1	ENSG00000204590.8	2079.46910	1772.99280	0.22990	2.37530	1.66960	HepG2	NOL12
GNL1	ENSG00000204590.8	1981.02210	1393.44810	0.50750	10.37810	9.32290	HepG2	PCBP1
GNL1	ENSG00000204590.8	1690.01340	1417.96090	0.25310	2.89920	2.34170	HepG2	PTBP1
GNL1	ENSG00000204590.8	2256.44780	1796.83700	0.32850	6.24510	5.42890	HepG2	PUM1
GNL1	ENSG00000204590.8	2117.58510	1577.99170	0.42420	7.37580	6.56700	HepG2	NELFE
GNL1	ENSG00000204590.8	1719.47060	1469.79850	0.22620	2.47090	1.88440	HepG2	RECQL
GNL1	ENSG00000204590.8	1843.40950	1418.55530	0.37790	2.23990	1.63250	HepG2	SF3A3
GNL1	ENSG00000204590.8	1323.85060	1103.18700	0.26300	3.15520	2.47560	HepG2	SMN1
GNL1	ENSG00000204590.8	1522.75120	979.69540	0.63620	2.55810	1.80740	HepG2	SNRNP70
GNL1	ENSG00000204590.8	3422.64050	2289.34570	0.58010	17.68080	16.70320	HepG2	SRFBP1
GNL1	ENSG00000204590.8	2049.42800	1671.28650	0.29420	4.15020	3.41250	HepG2	SRSF5
GNL1	ENSG00000204590.8	1243.68720	1489.12340	-0.25980	2.39720	1.74590	HepG2	SRSF7
GNL1	ENSG00000204590.8	2222.38020	1253.59570	0.82590	28.23330	26.82360	HepG2	SRSF9
GNL1	ENSG00000204590.8	1548.10910	1987.63250	-0.36050	5.91550	5.21950	HepG2	SSB
GNL1	ENSG00000204590.8	2414.49830	1900.60660	0.34520	6.76660	5.86890	HepG2	SUCLG1
GNL1	ENSG00000204590.8	1383.92710	1032.23780	0.42290	4.77420	4.15400	HepG2	TIAL1
GNL1	ENSG00000204590.8	1250.64980	1041.37180	0.26410	2.77870	2.21370	HepG2	TRIM56
GNL1	ENSG00000204590.8	1579.25810	1201.58180	0.39420	3.20690	2.53410	HepG2	U2AF1
GNL1	ENSG00000204590.8	2776.58630	2319.19170	0.25960	3.56320	2.93290	K562	AGGF1
GNL1	ENSG00000204590.8	2107.21800	3221.54690	-0.61240	6.17650	5.35950	K562	AQR
GNL1	ENSG00000204590.8	3249.02940	2419.43920	0.42520	8.71890	7.64310	K562	DDX47
GNL1	ENSG00000204590.8	2962.98090	2521.15340	0.23290	2.74310	2.02700	K562	EIF2S2
GNL1	ENSG00000204590.8	1517.06880	1091.42790	0.47500	2.47210	1.52500	K562	EIF3A
GNL1	ENSG00000204590.8	2764.72420	1701.53810	0.70020	7.65100	5.78590	K562	EIF3D
GNL1	ENSG00000204590.8	1785.07730	1332.17280	0.42210	5.74930	4.61620	K562	EIF3G
GNL1	ENSG00000204590.8	843.32500	1285.10650	-0.60770	5.75950	4.02230	K562	FKBP4
GNL1	ENSG00000204590.8	2131.61470	1578.43690	0.43340	7.05600	6.15040	K562	FXR1
GNL1	ENSG00000204590.8	654.14040	1002.78180	-0.61630	4.20880	3.29530	K562	G3BP2
GNL1	ENSG00000204590.8	1503.05090	1975.32610	-0.39420	5.23290	3.69280	K562	GLRX3
GNL1	ENSG00000204590.8	1896.40290	2416.98290	-0.34990	3.74780	2.49670	K562	HNRNPA1
GNL1	ENSG00000204590.8	2029.67960	1480.80360	0.45480	5.51320	4.69940	K562	HNRNPC
GNL1	ENSG00000204590.8	1742.35890	2076.82830	-0.25330	3.06390	2.21550	K562	MTPAP
GNL1	ENSG00000204590.8	2136.75260	1623.67120	0.39610	4.64800	2.85790	K562	PCBP1
GNL1	ENSG00000204590.8	2268.68490	1655.62290	0.45440	3.90110	2.94350	K562	POLR2G
GNL1	ENSG00000204590.8	4873.99170	3849.35690	0.34040	3.35380	2.45620	K562	PUF60
GNL1	ENSG00000204590.8	2068.78670	1575.26960	0.39310	2.85600	2.02570	K562	RPS19
GNL1	ENSG00000204590.8	1373.50760	939.86070	0.54720	4.78260	3.41840	K562	RPS3
GNL1	ENSG00000204590.8	2650.63090	2277.04170	0.21910	2.44610	1.67630	K562	SF3A3
GNL1	ENSG00000204590.8	1288.64050	1042.10420	0.30630	2.63160	1.79950	K562	SF3B4
GNL1	ENSG00000204590.8	2495.86010	1581.83840	0.65780	11.60190	10.16340	K562	SRSF1
GNL1	ENSG00000204590.8	1062.06430	1374.16370	-0.37170	4.18100	2.56340	K562	SSB
GNL1	ENSG00000204590.8	2015.34610	1600.71450	0.33220	2.58070	1.89570	K562	TARDBP
GNL1	ENSG00000204590.8	1686.19330	2093.42900	-0.31210	2.88860	1.99380	K562	WDR3
GNL1	ENSG00000204590.8	2910.20430	3816.19350	-0.39100	4.36130	2.73170	K562	WRN
GNL1	ENSG00000204590.8	2654.84250	3629.54650	-0.45120	4.17190	3.07570	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

4 RBPs can affect the splicing of GNL1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GNL1	ENSG00000204590.8	chr6	-	30514731	30514790	30514472	30514613	30514888	30515051	0.07300	0.00097	0.02032	included	K562	SRSF1
SE	GNL1	ENSG00000204590.8	chr6	-	30514731	30514790	30514472	30514613	30514888	30515051	0.09100	0.00000	0.00357	included	K562	PHF6
SE	GNL1	ENSG00000204590.8	chr6	-	30514731	30514790	30514472	30514613	30514888	30515051	0.11200	0.00001	0.00121	included	K562	PTBP1
A3SS	GNL1	ENSG00000204590.8	chr6	-	30523331	30523568	30523331	30523497	30523907	30524951	0.06500	0.00021	0.00170	longer	K562	AQR
A3SS	GNL1	ENSG00000204590.8	chr6	-	30522831	30523033	30522831	30522968	30523331	30523865	0.07200	0.00000	0.00000	longer	K562	AQR
A5SS	GNL1	ENSG00000204590.8	chr6	-	30514731	30514967	30514888	30514967	30514472	30514613	0.07000	0.00026	0.03625	longer	K562	PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GNL1

General Information

Functions

Localization

Domains (AlphaFold: GNL1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GNL1 is not avaliable on ENCORE database.

18 proteins are bound to GNL1 RNA:

eCLIP assay for GNL1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

54 RBPs can affect the gene expression of GNL1 :

The Knockdown/knockout RNA-Seq assay for GNL1 is not available on ENCORE database.

4 RBPs can affect the splicing of GNL1 :

The Knockdown/knockout RNA-Seq assay for GNL1 is not avaliable on ENCORE database.