GATAD1

General Information

Gene Name       : GATAD1
Gene ID             : ENSG00000157259.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GATAD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GATAD1ENSG00000157259.716.0913.4614.78ENCSR000AEF
HepG2GATAD1ENSG00000157259.710.7519.3115.03ENCSR985KAT
K562GATAD1ENSG00000157259.724.6727.4726.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GATAD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GATAD1 RNA is bound by 18 proteins.  







eCLIP assay for GATAD1 is not avaliable on ENCORE database.





18 proteins are bound to GATAD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79208581992085927+3'-UTR,CDS3.992904.29472K562IGF2BP1
chr79208808092088130+3'-UTR,intron-Distal3.556925.13860K562PUM2
chr79208752992087671+3'-UTR,intron-Distal3.752133.34065K562IGF2BP1
chr79208711792087177+3'-UTR,intron-Distal3.056893.58206K562LIN28B
chr79207679392076882+5'-UTR3.261537.22071HepG2NCBP2
chr79207683292076879+5'-UTR3.980744.66021K562GEMIN5
chr79208385092084000+CDS,intron-Proximal4.390355.48535K562GRWD1
chr79207818792078297+CDS,intron-Distal,intron-Proximal4.3147314.93802K562AQR
chr79207999492080054+CDS,intron-Proximal3.814048.67867K562AQR
chr79208000692080069+CDS,intron-Proximal3.286816.58265K562GPKOW
chr79207713892077148+CDS5.6973110.73550K562RBM15
chr79207716292077237+CDS3.279065.35042HepG2GTF2F1
chr79208378692083827+CDS,intron-Proximal3.953183.02181K562PRPF8
chr79208577492085839+CDS4.268363.63655K562IGF2BP2
chr79207807692078133+CDS3.448097.52752K562U2AF2
chr79207810392078169+CDS3.255783.69481K562UCHL5
chr79208000592080094+CDS,intron-Proximal3.3379215.07800K562BUD13
chr79208377592083870+CDS,intron-Proximal3.003714.86845K562BUD13
chr79207802092078120+CDS,intron-Proximal5.1408315.50357HepG2U2AF2
chr79207804892078076+CDS,intron-Proximal4.021724.47532K562U2AF2
chr79207713692077263+CDS3.3531610.20827K562GEMIN5
chr79207714892077194+CDS6.1896815.69259K562RBM15
chr79207719492077255+CDS3.809097.39702K562RBM15
chr79207932192079343+intron-Distal3.278533.48890K562KHSRP
chr79207915692079215+intron-Distal3.253263.59783HepG2HNRNPK
chr79207735192077398+intron-Distal,intron-Proximal4.714824.34233HepG2XRN2
chr79207795192078027+intron-Distal,intron-Proximal3.314114.35941K562KHSRP
chr79207737592077415+intron-Distal,intron-Proximal4.443145.16052K562RBM15
chr79207729292077338+intron-Proximal4.484568.30573K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GATAD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GATAD1 is not available on ENCORE database.

  • 50 RBPs can affect the levels of GATAD1.  








The Knockdown/knockout RNA-Seq assay for GATAD1 is not available on ENCORE database.





50 RBPs can affect the gene expression of GATAD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GATAD1ENSG00000157259.6697.51910934.13550-0.421405.319904.53040HepG2ACO1
GATAD1ENSG00000157259.6955.628901314.06070-0.459503.063702.50740HepG2AKAP1
GATAD1ENSG00000157259.6677.81660938.50980-0.469505.891504.81010HepG2AKAP8L
GATAD1ENSG00000157259.6950.52520715.575700.409503.508502.47180HepG2DDX24
GATAD1ENSG00000157259.6864.386601258.76760-0.542304.625303.83170HepG2DDX3X
GATAD1ENSG00000157259.6896.001501148.75170-0.358501.994101.44850HepG2EIF4A3
GATAD1ENSG00000157259.61325.418701528.26480-0.205401.859801.34620HepG2ETF1
GATAD1ENSG00000157259.61021.20610755.881300.433903.853502.93450HepG2FUBP3
GATAD1ENSG00000157259.6890.037101159.05280-0.381002.597201.92730HepG2FXR1
GATAD1ENSG00000157259.6854.475901075.18590-0.331501.899501.34300HepG2G3BP1
GATAD1ENSG00000157259.61163.42110798.380200.543104.267403.48420HepG2GPKOW
GATAD1ENSG00000157259.6862.777001228.51290-0.509902.987801.83040HepG2GRSF1
GATAD1ENSG00000157259.61086.03980891.821400.284202.830101.84200HepG2HDGF
GATAD1ENSG00000157259.61186.34630971.289100.288502.630901.93130HepG2HNRNPF
GATAD1ENSG00000157259.6996.82110761.911700.387602.580301.96870HepG2HNRNPLL
GATAD1ENSG00000157259.61028.28180776.832900.404503.247501.93360HepG2LIN28B
GATAD1ENSG00000157259.6751.942001165.94510-0.632805.324204.47350HepG2MATR3
GATAD1ENSG00000157259.6812.161501193.40830-0.555204.589903.78540HepG2NCBP2
GATAD1ENSG00000157259.61026.142701329.37040-0.373502.377801.67190HepG2NOL12
GATAD1ENSG00000157259.61084.91190915.688900.244502.101801.41960HepG2PRPF4
GATAD1ENSG00000157259.6765.16390543.667500.492903.845402.91280HepG2PRPF8
GATAD1ENSG00000157259.6957.939601118.43490-0.223501.922801.45100HepG2PTBP1
GATAD1ENSG00000157259.6967.097201346.88810-0.477903.919303.24010HepG2PUM1
GATAD1ENSG00000157259.61612.302501211.336300.412404.880704.08670HepG2QKI
GATAD1ENSG00000157259.6578.87870966.19270-0.739004.206303.34640HepG2RAVER1
GATAD1ENSG00000157259.61075.974901277.33750-0.247502.222601.74450HepG2RBM22
GATAD1ENSG00000157259.61551.61270839.102000.886807.444106.15460HepG2SNRNP70
GATAD1ENSG00000157259.6936.790201215.44150-0.375704.681204.10700HepG2SRSF1
GATAD1ENSG00000157259.6984.406101252.72610-0.347702.532301.92890HepG2SRSF5
GATAD1ENSG00000157259.61702.894501092.444600.6403011.8589010.82400HepG2TAF15
GATAD1ENSG00000157259.6933.27170742.709200.329402.088901.44620HepG2TARDBP
GATAD1ENSG00000157259.61378.349701003.851900.457305.224004.08910HepG2TIA1
GATAD1ENSG00000157259.6738.95350903.66990-0.290302.825002.14730HepG2ZC3H8
GATAD1ENSG00000157259.61975.445002835.33060-0.5213012.0063010.91600K562AGGF1
GATAD1ENSG00000157259.62084.924702950.29270-0.500906.260405.24970K562AKAP8L
GATAD1ENSG00000157259.61845.219801193.751500.628207.276705.83890K562BOP1
GATAD1ENSG00000157259.63064.104702311.065700.406807.882706.85960K562DDX47
GATAD1ENSG00000157259.62710.248003174.70950-0.228202.547001.71110K562DKC1
GATAD1ENSG00000157259.61256.599101675.71820-0.415304.045303.05420K562EIF4A3
GATAD1ENSG00000157259.61121.928601742.67490-0.6353012.5981011.40270K562FXR1
GATAD1ENSG00000157259.61334.121301899.59850-0.509806.343005.19090K562GRSF1
GATAD1ENSG00000157259.61910.519201498.333600.350503.570302.34690K562HNRNPA1
GATAD1ENSG00000157259.61632.518501034.807400.657605.480504.11060K562KRR1
GATAD1ENSG00000157259.61445.480701995.19120-0.465005.628704.41870K562MAGOH
GATAD1ENSG00000157259.61449.695201991.20820-0.457905.631504.25440K562MATR3
GATAD1ENSG00000157259.61034.685101761.01650-0.767203.581602.41480K562PABPN1
GATAD1ENSG00000157259.61369.384001775.30360-0.374503.452202.36050K562PCBP2
GATAD1ENSG00000157259.61147.583401938.42150-0.7563014.1054012.66830K562PTBP1
GATAD1ENSG00000157259.62505.511102999.96700-0.259802.278101.53860K562PUF60
GATAD1ENSG00000157259.61845.750302925.86200-0.664709.873308.89540K562PUS1
GATAD1ENSG00000157259.62165.476102850.82730-0.396705.777504.94700K562RBM15
GATAD1ENSG00000157259.61194.047001858.94660-0.638608.353706.78020K562RBM22
GATAD1ENSG00000157259.61289.25320964.099600.419202.792901.97250K562RPS19
GATAD1ENSG00000157259.6900.814601135.63240-0.334202.576501.53450K562SAFB
GATAD1ENSG00000157259.61175.617501900.25170-0.6928011.5858010.14980K562SRSF1
GATAD1ENSG00000157259.6984.697601278.36880-0.376603.727002.77460K562SYNCRIP
GATAD1ENSG00000157259.61580.699101923.28140-0.283001.974301.36940K562TARDBP
GATAD1ENSG00000157259.62694.389601925.546800.484606.380405.34300K562UPF1
GATAD1ENSG00000157259.62176.840101647.604600.401804.720703.56410K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GATAD1 is not available on ENCORE database.





8 RBPs can affect the splicing of GATAD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGATAD1ENSG00000157259.6chr7+9207840592078527920780659207819192080014920800740.243000.000000.00000includedHepG2HNRNPK
SEGATAD1ENSG00000157259.6chr7+9207840592078527920780659207819192080014920800740.134000.000340.04452includedHepG2PCBP2
SEGATAD1ENSG00000157259.6chr7+920784059207852792078074920781919208001492080074-0.111000.000060.00918excludedK562HNRNPUL1
SEGATAD1ENSG00000157259.6chr7+920800149208007492078065920781919208381592083999-0.055000.000830.01709excludedK562U2AF2
SEGATAD1ENSG00000157259.6chr7+9207840592078527920780659207819192080014920800740.148000.000360.06810includedHepG2DDX55
SEGATAD1ENSG00000157259.6chr7+9207840592078527920780659207819192080014920800740.304000.000000.00005includedHepG2HNRNPC
SEGATAD1ENSG00000157259.6chr7+9207840592078527920780659207819192080014920800740.145000.000080.00838includedHepG2SRSF9
SEGATAD1ENSG00000157259.6chr7+920784059207852792078065920781919208001492080074-0.116000.000000.00264excludedK562NPM1
SEGATAD1ENSG00000157259.6chr7+9207840592078527920780659207819192080014920800740.230000.000000.00000includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GATAD1 is not avaliable on ENCORE database.