FAM96B

General Information

Gene Name       : FAM96B
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM96B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM96B is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM96B RNA is bound by 12 proteins.  







eCLIP assay for FAM96B is not avaliable on ENCORE database.





12 proteins are bound to FAM96B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166696603366966096-3'-UTR,intron-Distal,intron-Proximal5.0025313.30681K562PABPC4
chr166696671566966728-3'-UTR,CDS,intron-Distal3.030186.87592K562YBX3
chr166696619366966271-3'-UTR,CDS,intron-Distal,intron-Proximal3.769518.17646HepG2AQR
chr166696668766966719-3'-UTR,CDS,intron-Distal3.514856.89080HepG2LARP4
chr166696602866966108-3'-UTR,CDS,intron-Distal,intron-Proximal3.907137.20098K562IGF2BP2
chr166696670466966752-3'-UTR,CDS,intron-Distal,intron-Proximal3.459846.21987K562AQR
chr166696601866966112-3'-UTR,CDS,intron-Distal,intron-Proximal3.806393.08342HepG2AKAP1
chr166696614566966190-3'-UTR,CDS,intron-Distal,intron-Proximal3.474758.83898HepG2LARP4
chr166696602666966091-3'-UTR,intron-Distal,intron-Proximal6.5212823.42481HepG2LARP4
chr166696609166966145-3'-UTR,CDS,intron-Distal,intron-Proximal4.0020713.56562HepG2LARP4
chr166696670766966797-3'-UTR,CDS,intron-Distal,intron-Proximal3.908213.15816HepG2PRPF4
chr166696668866966715-3'-UTR,CDS,intron-Distal3.273949.30255K562YBX3
chr166696752066967578-5'-UTR,CDS,intron-Distal3.7863822.39570K562YBX3
chr166696792166967939-5'-UTR,CDS,intron-Distal3.8965811.26428K562YBX3
chr166696790466967980-5'-UTR,CDS,intron-Distal,intron-Proximal3.920799.18533HepG2AQR
chr166696750366967535-5'-UTR,CDS,intron-Distal,intron-Proximal4.7932614.13178HepG2PRPF8
chr166696791066967921-5'-UTR,CDS,intron-Distal4.099088.99212K562YBX3
chr166696805266968125-5'-UTR,intron-Distal,intron-Proximal4.443479.68645HepG2AQR
chr166696748066967522-5'-UTR,CDS,intron-Distal,intron-Proximal3.308433.20886K562PRPF8
chr166696756166967608-5'-UTR,CDS,intron-Distal3.749383.48371HepG2YBX3
chr166696814966968277-5'-UTR,CDS,intron-Distal,intron-Proximal4.1038627.95975K562DDX3X
chr166696751666967520-5'-UTR,CDS,intron-Distal,intron-Proximal3.080686.35167K562YBX3
chr166696821966968287-5'-UTR,CDS,intron-Distal,intron-Proximal5.0881615.25090HepG2DDX3X
chr166696793966967964-5'-UTR,CDS,intron-Distal3.5303310.87798K562YBX3
chr166696788866967936-5'-UTR,CDS,intron-Distal,intron-Proximal4.384413.79199HepG2PPIG
chr166696814266968232-CDS,intron-Distal,intron-Proximal3.657903.79722K562LIN28B
chr166696817266968212-CDS,intron-Distal,intron-Proximal3.306607.44878K562YBX3
chr166696764566967703-intron-Distal,intron-Proximal3.764153.13970HepG2SF3B4
chr166696661666966683-intron-Distal,intron-Proximal5.4358717.39019K562AQR
chr166696742366967516-intron-Distal,intron-Proximal6.0323013.28065K562AQR
chr166696747766967503-intron-Distal,intron-Proximal5.3094815.13298HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM96B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM96B is not available on ENCORE database.

  • 72 RBPs can affect the levels of FAM96B.  








The Knockdown/knockout RNA-Seq assay for FAM96B is not available on ENCORE database.





72 RBPs can affect the gene expression of FAM96B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM96BENSG00000166595.7852.84800716.465900.251301.966901.30560HepG2AKAP8L
FAM96BENSG00000166595.7377.87300213.923800.820706.070805.22370HepG2BOP1
FAM96BENSG00000166595.71052.39890805.629200.385403.658902.94030HepG2CELF1
FAM96BENSG00000166595.71084.08880866.122900.323704.322403.42940HepG2DAZAP1
FAM96BENSG00000166595.7338.95770544.19920-0.683006.097204.74660HepG2DDX24
FAM96BENSG00000166595.71371.23020922.518700.571704.616203.83620HepG2DDX6
FAM96BENSG00000166595.7583.38150408.378100.514404.438103.56290HepG2DNAJC21
FAM96BENSG00000166595.7562.79780404.726400.475604.887004.05980HepG2DNAJC2
FAM96BENSG00000166595.7207.60960412.11840-0.989205.146403.58180HepG2EIF2S2
FAM96BENSG00000166595.7386.91900525.04450-0.440402.930701.82260HepG2EIF3G
FAM96BENSG00000166595.7641.67700954.07170-0.572303.503302.73320HepG2EIF4B
FAM96BENSG00000166595.71042.506701255.49430-0.268202.613702.02630HepG2ETF1
FAM96BENSG00000166595.7886.11040696.834600.346602.556201.75370HepG2EWSR1
FAM96BENSG00000166595.7462.84140688.31830-0.572604.991903.94910HepG2FUBP3
FAM96BENSG00000166595.7665.12130973.83960-0.550104.609503.44870HepG2G3BP2
FAM96BENSG00000166595.71184.11500788.933400.5857012.1170010.79970HepG2HNRNPL
FAM96BENSG00000166595.7577.35070465.332300.311102.676501.95540HepG2ILF2
FAM96BENSG00000166595.7766.03810989.15340-0.368802.266501.67030HepG2MAGOH
FAM96BENSG00000166595.7790.028401018.01060-0.365802.217401.64840HepG2NCBP2
FAM96BENSG00000166595.71110.81830858.852400.371002.403101.69410HepG2NOL12
FAM96BENSG00000166595.7883.28640591.552000.578302.852801.94930HepG2PABPC1
FAM96BENSG00000166595.7689.83500906.38220-0.393902.493001.80430HepG2PABPC4
FAM96BENSG00000166595.7264.33190390.28580-0.562203.830702.93390HepG2PRPF4
FAM96BENSG00000166595.7669.33720944.47970-0.496806.132205.38040HepG2PTBP1
FAM96BENSG00000166595.71015.41690819.884800.308502.097201.56790HepG2PUF60
FAM96BENSG00000166595.71306.18570869.723700.586608.453707.30940HepG2PUM2
FAM96BENSG00000166595.7605.91990726.41320-0.261702.061401.51110HepG2PUS1
FAM96BENSG00000166595.7764.661601022.89160-0.419804.182403.43640HepG2QKI
FAM96BENSG00000166595.7606.92260928.34110-0.613106.801505.78520HepG2RBM25
FAM96BENSG00000166595.7822.587301051.11400-0.353703.667703.06150HepG2NELFE
FAM96BENSG00000166595.7663.31310978.97200-0.561607.803006.84590HepG2RECQL
FAM96BENSG00000166595.7655.16780405.696800.691409.509808.42750HepG2SAFB2
FAM96BENSG00000166595.773.45320210.27900-1.5174010.191008.91320HepG2SF3B1
FAM96BENSG00000166595.7542.70060983.32260-0.8575015.8754014.63700HepG2SF3B4
FAM96BENSG00000166595.7645.01680412.826500.643703.434602.35260HepG2SMNDC1
FAM96BENSG00000166595.7814.482701026.37700-0.333603.391502.88190HepG2SRSF1
FAM96BENSG00000166595.7948.34610809.565900.228202.023701.47780HepG2SRSF5
FAM96BENSG00000166595.7564.88180835.01330-0.563907.878007.03190HepG2SRSF9
FAM96BENSG00000166595.7781.550701029.05600-0.396904.819704.17940HepG2SSB
FAM96BENSG00000166595.71098.83380920.657400.255102.073701.52020HepG2SUCLG1
FAM96BENSG00000166595.7568.53850370.347400.618303.370902.33970HepG2SUPT6H
FAM96BENSG00000166595.7513.89930922.55060-0.8441013.6773012.57000HepG2TAF15
FAM96BENSG00000166595.7554.70540442.709200.325301.945701.51090HepG2TIAL1
FAM96BENSG00000166595.7585.37840446.605800.390303.304702.70100HepG2TRIM56
FAM96BENSG00000166595.7241.79250458.33600-0.922605.481204.03950HepG2UPF2
FAM96BENSG00000166595.7490.92810393.370100.319501.922001.40410HepG2UTP3
FAM96BENSG00000166595.7681.19890492.930600.466602.088201.45040HepG2XRN2
FAM96BENSG00000166595.71133.63620579.167100.9688022.4066020.90040K562AGGF1
FAM96BENSG00000166595.7831.37040636.423100.385402.930401.91040K562AKAP8
FAM96BENSG00000166595.71048.29620602.651100.798604.385003.55610K562AKAP8L
FAM96BENSG00000166595.7799.29920632.328900.338002.603101.71940K562ATP5C1
FAM96BENSG00000166595.7656.34710515.385800.348702.553901.49100K562CPEB4
FAM96BENSG00000166595.7735.15170542.656800.437904.213202.50110K562DDX6
FAM96BENSG00000166595.7811.71390648.486500.323802.765901.89230K562DKC1
FAM96BENSG00000166595.7235.07980341.56430-0.539002.900701.51900K562DNAJC21
FAM96BENSG00000166595.7490.61530735.27570-0.583702.717002.00350K562EIF2S2
FAM96BENSG00000166595.7181.40060323.08890-0.832803.051901.99010K562EIF3A
FAM96BENSG00000166595.7361.70140232.952100.634704.761303.73200K562EIF3G
FAM96BENSG00000166595.7554.87800328.086200.758003.040802.15020K562FIP1L1
FAM96BENSG00000166595.771.49350268.74930-1.910407.546006.25870K562G3BP2
FAM96BENSG00000166595.71484.82180979.637900.599902.941102.16280K562GRSF1
FAM96BENSG00000166595.7562.75800351.288500.679802.627601.44960K562HNRNPA2B1
FAM96BENSG00000166595.7680.31210464.509200.550402.802101.77000K562IGF2BP2
FAM96BENSG00000166595.7812.37020639.558300.345002.308001.56320K562KIF1C
FAM96BENSG00000166595.7819.14070612.218800.420003.031301.89480K562MAK16
FAM96BENSG00000166595.7444.59300716.46750-0.688407.374705.74880K562MBNL1
FAM96BENSG00000166595.7564.89150307.256900.878403.929802.69390K562PABPN1
FAM96BENSG00000166595.7409.08640562.18770-0.458602.551201.75280K562PCBP3
FAM96BENSG00000166595.7795.59400372.534901.094608.588306.94320K562PPIG
FAM96BENSG00000166595.7719.96340365.273600.978804.575602.52930K562PPP1R8
FAM96BENSG00000166595.7660.01810480.404300.458202.950902.17770K562PRPF8
FAM96BENSG00000166595.71005.68350597.654000.750708.650407.73910K562PUS1
FAM96BENSG00000166595.7898.18230582.332500.625105.231804.43900K562RBM15
FAM96BENSG00000166595.7324.14270229.460300.498303.336301.59780K562RPS10
FAM96BENSG00000166595.7269.66840489.34550-0.859706.705505.42300K562RPS19
FAM96BENSG00000166595.7608.22290342.530800.828303.345801.85990K562SFPQ
FAM96BENSG00000166595.7667.81020464.569400.523402.702102.00210K562SRSF1
FAM96BENSG00000166595.7330.51750490.79050-0.570404.970502.90070K562SRSF9
FAM96BENSG00000166595.7723.31940470.048100.621702.914202.18830K562TARDBP
FAM96BENSG00000166595.7635.65700453.447700.487202.211301.48600K562TIA1
FAM96BENSG00000166595.7169.14630268.78840-0.668202.530701.76220K562U2AF2
FAM96BENSG00000166595.7603.83950929.97790-0.623005.552903.19590K562UPF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM96B is not available on ENCORE database.





2 RBPs can affect the splicing of FAM96B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM96BENSG00000166595.7chr16-669666826696672866965958669662036696751666967642-0.065000.000000.00039excludedK562PRPF8
SEFAM96BENSG00000166595.7chr16-669666826696672866965958669662036696751666967642-0.117000.000000.00000excludedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM96B is not avaliable on ENCORE database.