EEFSEC

General Information

Gene Name       : EEFSEC
Gene ID             : ENSG00000132394.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: EEFSEC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EEFSECENSG00000132394.103.327.105.21ENCSR000AEF
HepG2EEFSECENSG00000132394.1019.629.1514.39ENCSR985KAT
K562EEFSECENSG00000132394.108.526.187.35ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EEFSEC is not avaliable on ENCORE database.



Proteins bound to RNA
  • EEFSEC RNA is bound by 28 proteins.  







eCLIP assay for EEFSEC is not avaliable on ENCORE database.





28 proteins are bound to EEFSEC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3128127190128127369+3'-UTR3.865735.64093HepG2UPF1
chr3128127105128127240+3'-UTR3.553263.27682HepG2LARP4
chr3127872317127872387+5'-UTR,CDS3.813153.03048HepG2GTF2F1
chr3127981059127981111+CDS,intron-Distal,intron-Proximal4.823765.01842HepG2PRPF8
chr3127872490127872585+CDS3.292415.97001HepG2TROVE2
chr3127872647127872739+CDS,intron-Proximal3.326238.54207HepG2PRPF8
chr3127983477127983542+CDS,intron-Distal4.676894.67689HepG2PPIG
chr3127872517127872600+CDS6.2802816.25302K562TROVE2
chr3127872659127872721+CDS,intron-Proximal4.193513.25089HepG2AQR
chr3127980984127981046+CDS,intron-Distal3.130083.80299HepG2GRWD1
chr3127872506127872610+CDS3.222893.57490HepG2NKRF
chr3128049426128049497+intron-Distal4.240273.40229HepG2CSTF2T
chr3128050130128050245+intron-Distal5.876949.78105HepG2DDX59
chr3127937402127937519+intron-Distal4.526145.37406HepG2HNRNPM
chr3127880989127881089+intron-Distal3.657067.24444HepG2MATR3
chr3128050357128050460+intron-Distal6.2076816.20095HepG2DDX59
chr3128011111128011175+intron-Distal3.636143.06150K562KHSRP
chr3127884598127884657+intron-Distal3.188394.86332HepG2SUGP2
chr3127885152127885203+intron-Distal4.304794.03915HepG2SUGP2
chr3127901745127901812+intron-Distal4.006663.57264HepG2GTF2F1
chr3128050317128050477+intron-Distal3.998643.33062K562ILF3
chr3128050001128050083+intron-Distal4.7586811.86431HepG2PCBP2
chr3128009228128009352+intron-Distal3.120293.29251K562KHSRP
chr3127948895127948948+intron-Distal5.135478.82480HepG2PTBP1
chr3128102363128102405+intron-Distal4.641544.22343HepG2XPO5
chr3127884429127884471+intron-Distal4.214504.61447HepG2SUGP2
chr3128010609128010665+intron-Distal4.466593.79000HepG2U2AF2
chr3127893928127894061+intron-Distal5.2529217.71641HepG2PCBP2
chr3127884293127884322+intron-Distal4.035273.54208HepG2SUGP2
chr3127981067127981151+intron-Distal,intron-Proximal6.2283513.68711K562AQR
chr3127948909127948947+intron-Distal4.669353.42734K562PTBP1
chr3128007399128007473+intron-Distal5.301056.34931HepG2XPO5
chr3128003861128003974+intron-Distal5.2752010.00219HepG2RBFOX2
chr3128003298128003371+intron-Distal3.498054.98114HepG2ILF3
chr3127919977127920106+intron-Distal3.805744.23286HepG2QKI
chr3128050351128050443+intron-Distal6.9908633.19143HepG2PCBP2
chr3127948961127949036+intron-Distal3.945316.90077HepG2PTBP1
chr3127996315127996398+intron-Distal3.781243.29239HepG2CSTF2
chr3128026961128027044+intron-Distal4.084923.93054HepG2LIN28B
chr3127926008127926094+intron-Distal4.743625.14122HepG2PCBP2
chr3128026754128026865+intron-Distal4.182383.86368HepG2HNRNPM
chr3127875426127875510+intron-Distal4.913927.78302HepG2HNRNPL
chr3127882955127883023+intron-Distal4.358863.97018HepG2HNRNPM
chr3127972450127972519+intron-Distal4.532618.21761HepG2PTBP1
chr3127884344127884408+intron-Distal4.265558.41758HepG2SUGP2
chr3127879371127879425+intron-Distal4.822607.39957HepG2SUGP2
chr3127948971127949069+intron-Distal4.640084.30178K562PTBP1
chr3128050272128050341+intron-Distal3.292024.16645HepG2HNRNPK
chr3128007321128007386+intron-Distal3.353994.35402HepG2SUGP2
chr3127891767127891876+intron-Distal3.388613.10946HepG2SFPQ
chr3128034719128034914+intron-Distal3.638553.24603K562KHSRP
chr3128093716128093793+intron-Distal5.220826.34931HepG2XPO5
chr3128050121128050261+intron-Distal3.810105.09513HepG2HNRNPK
chr3128017557128017642+intron-Distal3.369003.35103HepG2QKI
chr3128050288128050351+intron-Distal6.5165820.08804HepG2PCBP2
chr3128049912128050121+intron-Distal5.247389.63018HepG2HNRNPK
chr3128003802128003861+intron-Distal4.323284.77477HepG2RBFOX2
chr3127901506127901563+intron-Distal3.936303.29248HepG2SUGP2
chr3128011371128011434+intron-Distal3.890653.06150K562KHSRP
chr3127902542127902664+intron-Distal3.380343.68481HepG2HNRNPM
chr3128050299128050357+intron-Distal4.469727.59655HepG2DDX59
chr3128092149128092201+intron-Distal3.321843.61733HepG2XPO5
chr3128079567128079637+intron-Distal4.624213.99130HepG2FAM120A
chr3127990302127990365+intron-Distal4.247673.97018HepG2HNRNPM
chr3127884318127884389+intron-Distal3.243544.21501HepG2MATR3
chr3127997900127997959+intron-Distal3.105933.48399HepG2CSTF2T
chr3128050173128050288+intron-Distal6.9963826.62223HepG2PCBP2
chr3127963590127963707+intron-Distal4.449253.45317HepG2HNRNPL
chr3127926100127926206+intron-Distal3.642037.04020HepG2PTBP1
chr3127901761127901792+intron-Distal3.685053.04224HepG2SUGP2
chr3127926094127926198+intron-Distal4.391346.92189HepG2PCBP2
chr3127999577127999661+intron-Distal4.326144.70434HepG2RBFOX2
chr3127926372127926442+intron-Distal4.284914.51091HepG2HNRNPL
chr3128026991128027047+intron-Distal3.670713.04123K562LIN28B
chr3128050096128050173+intron-Distal6.2100616.36967HepG2PCBP2
chr3128007739128007786+intron-Distal4.104973.07980HepG2HNRNPM
chr3128019979128020070+intron-Distal4.499813.00241HepG2SFPQ
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EEFSEC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EEFSEC is not available on ENCORE database.

  • 60 RBPs can affect the levels of EEFSEC.  








The Knockdown/knockout RNA-Seq assay for EEFSEC is not available on ENCORE database.





60 RBPs can affect the gene expression of EEFSEC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EEFSECENSG00000132394.6511.02340853.42210-0.739903.249102.67890HepG2AKAP1
EEFSECENSG00000132394.6348.27580482.60790-0.470603.156401.84290HepG2BUD13
EEFSECENSG00000132394.6482.84830670.84020-0.474402.484701.74740HepG2CIRBP
EEFSECENSG00000132394.6397.96260251.819000.660104.882003.97210HepG2DNAJC21
EEFSECENSG00000132394.6486.75870249.648900.963202.740002.09130HepG2DNAJC2
EEFSECENSG00000132394.6491.99330745.79770-0.600102.989402.32460HepG2EIF4A3
EEFSECENSG00000132394.6460.03800726.41100-0.659002.720502.03680HepG2EIF4B
EEFSECENSG00000132394.6407.43990736.18240-0.853509.771008.75240HepG2ETF1
EEFSECENSG00000132394.6433.03020601.11200-0.473203.412102.54310HepG2FUBP3
EEFSECENSG00000132394.6417.71240698.20760-0.741103.773303.00020HepG2G3BP1
EEFSECENSG00000132394.6559.28120381.180800.553003.262702.57270HepG2GPKOW
EEFSECENSG00000132394.6460.99470365.214200.335902.008601.39090HepG2HNRNPF
EEFSECENSG00000132394.6374.74720707.52880-0.916905.069104.14430HepG2HNRNPK
EEFSECENSG00000132394.6437.97470280.932900.640506.097105.22740HepG2HNRNPU
EEFSECENSG00000132394.6463.33590359.628700.365501.991201.36950HepG2IGF2BP1
EEFSECENSG00000132394.6461.15640709.63200-0.621803.734602.96100HepG2IGF2BP2
EEFSECENSG00000132394.6374.12020286.960600.382502.358501.67410HepG2ILF2
EEFSECENSG00000132394.6524.44290713.91960-0.445002.266301.37140HepG2KHSRP
EEFSECENSG00000132394.6473.81550753.17510-0.668703.333902.61330HepG2MAGOH
EEFSECENSG00000132394.6388.31910246.271200.656902.992401.48370HepG2NOLC1
EEFSECENSG00000132394.6417.49460250.566600.736503.196202.40950HepG2PPIL4
EEFSECENSG00000132394.6488.32710760.84750-0.639807.998007.16720HepG2PTBP1
EEFSECENSG00000132394.6639.03070823.97120-0.366702.911502.27350HepG2QKI
EEFSECENSG00000132394.6342.20070615.29750-0.846409.388708.56240HepG2RBM22
EEFSECENSG00000132394.6542.75730747.82400-0.462403.644802.87740HepG2RBM25
EEFSECENSG00000132394.6554.00580846.73250-0.612007.810306.98330HepG2NELFE
EEFSECENSG00000132394.6472.69190788.64840-0.7385010.604409.51750HepG2RECQL
EEFSECENSG00000132394.6126.50810213.94720-0.758003.249002.40650HepG2RRP9
EEFSECENSG00000132394.6327.37160250.172700.387902.218101.62990HepG2SAFB2
EEFSECENSG00000132394.6210.15840313.87520-0.578703.054002.06450HepG2SERBP1
EEFSECENSG00000132394.6372.57130572.53390-0.619803.423902.67120HepG2SF3A3
EEFSECENSG00000132394.6529.32030792.10220-0.581507.018106.14480HepG2SF3B4
EEFSECENSG00000132394.6599.96890423.874800.501103.324802.56710HepG2SLBP
EEFSECENSG00000132394.6400.42010201.455400.991002.934501.57680HepG2SNRNP200
EEFSECENSG00000132394.6472.74010826.79880-0.8065012.6470011.79530HepG2SRSF1
EEFSECENSG00000132394.6221.19190387.46700-0.808802.869601.84800HepG2SRSF3
EEFSECENSG00000132394.6450.64380358.821000.328601.898601.31060HepG2SRSF7
EEFSECENSG00000132394.6373.34400672.65830-0.8494013.3355012.28570HepG2SRSF9
EEFSECENSG00000132394.6468.04540665.24860-0.507203.305001.90910HepG2SSRP1
EEFSECENSG00000132394.6620.57030496.380300.322002.693602.07790HepG2SUCLG1
EEFSECENSG00000132394.6178.70970279.17660-0.643602.969902.27290HepG2SUPV3L1
EEFSECENSG00000132394.6493.96980743.20230-0.589305.768605.00970HepG2TAF15
EEFSECENSG00000132394.6542.43670682.85580-0.332102.311201.54550HepG2TIA1
EEFSECENSG00000132394.6406.06460272.912100.573204.160303.57430HepG2TIAL1
EEFSECENSG00000132394.6522.47600275.423300.9236013.0524011.95510HepG2TRIM56
EEFSECENSG00000132394.6324.31830556.42690-0.778806.230905.30500HepG2U2AF1
EEFSECENSG00000132394.6324.93300490.21260-0.593305.209304.43050HepG2UTP3
EEFSECENSG00000132394.6477.86830299.620700.673404.020002.69440HepG2XPO5
EEFSECENSG00000132394.6202.95550308.76380-0.605303.546202.80310K562AKAP8L
EEFSECENSG00000132394.6212.65870345.15490-0.698704.201403.50770K562AQR
EEFSECENSG00000132394.6508.68950339.949800.581405.396604.53060K562DDX47
EEFSECENSG00000132394.6147.9470078.215000.919503.766402.84810K562EIF3G
EEFSECENSG00000132394.6345.63600227.887300.600803.664502.67860K562FIP1L1
EEFSECENSG00000132394.627.6576058.53330-1.081602.300201.66340K562G3BP2
EEFSECENSG00000132394.6195.31690133.392700.550002.448501.34730K562IGF2BP3
EEFSECENSG00000132394.6222.27400327.70360-0.560102.857302.01610K562KIF1C
EEFSECENSG00000132394.6146.72630257.31290-0.810403.693102.63560K562NAA15
EEFSECENSG00000132394.6325.29200242.727800.422302.166601.45810K562POLR2G
EEFSECENSG00000132394.6159.82270306.26610-0.938306.208905.43490K562PUS1
EEFSECENSG00000132394.6209.46880298.36290-0.510302.845902.24530K562RBM15
EEFSECENSG00000132394.6206.15550135.067000.610002.752501.66400K562NELFE
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EEFSEC is not available on ENCORE database.






No RBPs affect the alternative splcing events of EEFSEC on ENCORE database.





The Knockdown/knockout RNA-Seq assay for EEFSEC is not avaliable on ENCORE database.