CLTA

General Information

Gene Name       : CLTA
Gene ID             : ENSG00000122705.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLTA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLTAENSG00000122705.1672.02112.4492.23ENCSR000AEF
HepG2CLTAENSG00000122705.16142.22126.91134.56ENCSR985KAT
K562CLTAENSG00000122705.16113.0196.66104.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLTA is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLTA RNA is bound by 15 proteins.  







eCLIP assay for CLTA is not avaliable on ENCORE database.





15 proteins are bound to CLTA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr93620406436204111+3'-UTR,CDS,intron-Proximal3.810824.30740K562PUM1
chr93621186636211941+3'-UTR,intron-Distal3.9432638.35986K562PABPC4
chr93621161436211698+3'-UTR,CDS,intron-Distal3.229767.97025HepG2BCLAF1
chr93620412136204175+3'-UTR,CDS4.111057.24602HepG2GRWD1
chr93620412836204177+3'-UTR,CDS,intron-Proximal3.136626.42293K562PUM1
chr93621170436211825+3'-UTR,CDS,intron-Distal4.8657114.45337HepG2GRWD1
chr93621159936211614+3'-UTR,CDS,intron-Distal,intron-Proximal4.319363.38968HepG2BCLAF1
chr93621200736212046+3'-UTR,intron-Distal6.1259211.71673HepG2SUB1
chr93621169836211781+3'-UTR,CDS,intron-Distal3.849138.04388K562PUM1
chr93621186636211952+3'-UTR,intron-Distal4.7458227.18653K562NOLC1
chr93621170836211797+3'-UTR,CDS,intron-Distal3.746223.46336HepG2SRSF1
chr93621196036212015+3'-UTR,intron-Distal4.304449.84602K562PABPC4
chr93621187036211951+3'-UTR,intron-Distal5.98514400.00000HepG2SUB1
chr93620411036204179+3'-UTR,CDS,intron-Proximal4.771504.95780HepG2ZNF800
chr93621190836211995+3'-UTR,intron-Distal4.0779011.20638K562LIN28B
chr93620411836204175+3'-UTR,CDS4.451948.23108K562UCHL5
chr93620410436204183+3'-UTR,CDS,intron-Proximal5.6653010.24913HepG2BCLAF1
chr93621198636212024+3'-UTR,intron-Distal4.492744.42734K562UCHL5
chr93621159836211662+3'-UTR,CDS,intron-Distal,intron-Proximal3.260069.19186K562ZNF800
chr93619093636190999+5'-UTR3.980847.73893K562DDX3X
chr93619100236191157+5'-UTR,CDS3.9377111.16519HepG2RPS3
chr93619100936191128+5'-UTR,CDS3.7235013.80727HepG2GRWD1
chr93619100936191062+5'-UTR,CDS4.3518615.91425HepG2DDX3X
chr93619099736191099+5'-UTR,CDS3.807999.19208K562GEMIN5
chr93619101036191058+5'-UTR,CDS4.9151915.77191HepG2SUB1
chr93619094436191009+5'-UTR4.267217.49943HepG2DDX3X
chr93619106236191137+CDS3.012063.44876HepG2DDX3X
chr93619125136191278+CDS,intron-Proximal4.031285.05356HepG2PRPF8
chr93619907136199093+CDS,intron-Distal4.477884.36390K562PUM1
chr93620406436204104+CDS,intron-Proximal3.517574.85828HepG2BCLAF1
chr93619757136197585+CDS,intron-Distal3.989026.20881HepG2SUB1
chr93619115536191210+CDS3.654854.48353K562LIN28B
chr93619897436198999+CDS,intron-Distal,intron-Proximal4.253778.50740HepG2SUB1
chr93623101636231050+intron-Distal5.4449313.40040K562TROVE2
chr93619127836191332+intron-Proximal3.616564.83899HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLTA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLTA is not available on ENCORE database.

  • 68 RBPs can affect the levels of CLTA.  








The Knockdown/knockout RNA-Seq assay for CLTA is not available on ENCORE database.





68 RBPs can affect the gene expression of CLTA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLTAENSG00000122705.121860.304101485.139500.324804.966604.19770HepG2ACO1
CLTAENSG00000122705.122280.691501855.366100.297701.998801.32710HepG2ASCC1
CLTAENSG00000122705.122851.091602254.018500.338905.847004.91110HepG2AUH
CLTAENSG00000122705.122350.788901762.738300.415203.688402.80490HepG2CIRBP
CLTAENSG00000122705.122334.513501798.062500.376605.774404.91070HepG2CELF1
CLTAENSG00000122705.121140.396401629.87130-0.515204.612203.32140HepG2DDX5
CLTAENSG00000122705.12813.010401093.83320-0.428002.524101.47120HepG2AGO1
CLTAENSG00000122705.121280.031901773.78510-0.470703.949303.24890HepG2EIF2S1
CLTAENSG00000122705.121210.24270933.268100.374802.424701.57330HepG2EIF3D
CLTAENSG00000122705.121386.391001827.14350-0.398303.554302.64040HepG2EIF4G2
CLTAENSG00000122705.122161.217902587.91590-0.259903.450002.78990HepG2ETF1
CLTAENSG00000122705.122025.528901451.118700.481006.014404.78140HepG2EWSR1
CLTAENSG00000122705.121043.794601831.58570-0.811303.659602.48580HepG2FTO
CLTAENSG00000122705.12935.635201834.72730-0.9715013.6559012.24140HepG2G3BP1
CLTAENSG00000122705.121054.60020830.925300.343802.223401.42680HepG2GEMIN5
CLTAENSG00000122705.121468.887102072.67000-0.496804.317803.52930HepG2GPKOW
CLTAENSG00000122705.121517.249301753.84430-0.209102.189801.54640HepG2HNRNPF
CLTAENSG00000122705.121423.259801977.98820-0.474804.533103.74610HepG2HNRNPLL
CLTAENSG00000122705.121726.058101408.144500.293602.455001.55750HepG2HNRNPM
CLTAENSG00000122705.121540.379601255.199100.295302.506201.80450HepG2ILF2
CLTAENSG00000122705.121478.327801978.68650-0.420603.380502.65460HepG2MAGOH
CLTAENSG00000122705.121329.844401651.75930-0.312702.736601.93220HepG2MSI2
CLTAENSG00000122705.121363.686702017.31740-0.564903.703702.57240HepG2MTPAP
CLTAENSG00000122705.121572.335802036.54420-0.373202.666102.04320HepG2NCBP2
CLTAENSG00000122705.121485.475801917.10900-0.368004.442203.47700HepG2NOL12
CLTAENSG00000122705.121395.185201753.87360-0.330102.455601.75040HepG2NSUN2
CLTAENSG00000122705.121205.332601813.49890-0.589305.877804.83820HepG2PABPC4
CLTAENSG00000122705.121250.466501976.21340-0.6603016.3123015.03950HepG2PCBP1
CLTAENSG00000122705.121580.134202010.85210-0.347805.078404.38410HepG2PTBP1
CLTAENSG00000122705.121285.220501830.04990-0.509904.770504.01360HepG2PUF60
CLTAENSG00000122705.122291.693201941.260400.239302.164101.56800HepG2PUM2
CLTAENSG00000122705.121810.720701512.689800.259302.279401.70720HepG2PUS1
CLTAENSG00000122705.121304.457902177.84280-0.7394016.0016014.67820HepG2QKI
CLTAENSG00000122705.123197.650602163.018600.5639012.3001011.36740HepG2RBM22
CLTAENSG00000122705.121244.066501976.51700-0.6679010.802309.53020HepG2RBM25
CLTAENSG00000122705.121350.786001034.649100.384602.395301.40980HepG2RCC2
CLTAENSG00000122705.121574.780802237.90100-0.5070010.237309.31790HepG2NELFE
CLTAENSG00000122705.121570.617602084.27220-0.408206.986806.07270HepG2RECQL
CLTAENSG00000122705.12426.93220911.37280-1.0940015.4914013.38580HepG2SERBP1
CLTAENSG00000122705.122602.931401861.128100.483902.033801.45490HepG2SF3A3
CLTAENSG00000122705.121317.768201957.81060-0.571106.921305.84640HepG2SF3B1
CLTAENSG00000122705.121413.872502093.59050-0.5663012.5205011.40400HepG2SF3B4
CLTAENSG00000122705.121607.195502185.24140-0.443208.606707.87810HepG2SRSF1
CLTAENSG00000122705.121171.029901777.79830-0.6023013.9676012.89780HepG2SRSF9
CLTAENSG00000122705.12399.486201363.16750-1.7707028.2794025.29480HepG2STAU1
CLTAENSG00000122705.121288.790501964.14170-0.6079011.5879010.56350HepG2TAF15
CLTAENSG00000122705.121212.743701804.81940-0.573608.676107.20300HepG2TIA1
CLTAENSG00000122705.121008.27790708.669800.508603.783202.89600HepG2UCHL5
CLTAENSG00000122705.122236.120501593.525000.4887010.318109.27850HepG2UTP3
CLTAENSG00000122705.122317.850001815.272300.352507.371806.59040HepG2ZNF622
CLTAENSG00000122705.122211.618901550.482900.5123011.0937010.05350K562AGGF1
CLTAENSG00000122705.122178.681501703.821100.354603.515202.37360K562AKAP8
CLTAENSG00000122705.122139.539301613.366100.407104.351003.52610K562AKAP8L
CLTAENSG00000122705.122641.603302139.365100.304102.775402.18660K562AQR
CLTAENSG00000122705.122104.173801692.844200.313703.987502.87270K562ATP5C1
CLTAENSG00000122705.122109.510302602.23740-0.302803.650702.57370K562EIF4G2
CLTAENSG00000122705.122281.524001770.510400.365703.250702.32830K562FIP1L1
CLTAENSG00000122705.121337.79570957.708300.482106.880205.98670K562FXR1
CLTAENSG00000122705.122637.909802106.917600.324203.209702.39800K562GRSF1
CLTAENSG00000122705.121952.900801456.170400.423303.216602.20830K562HNRNPM
CLTAENSG00000122705.121944.795501619.841600.263702.736401.84800K562HNRNPU
CLTAENSG00000122705.122071.506001712.120200.274802.692001.87920K562KIF1C
CLTAENSG00000122705.122146.188601638.972600.388904.387302.94150K562MAK16
CLTAENSG00000122705.122549.704901918.016000.410605.244203.90720K562MBNL1
CLTAENSG00000122705.122584.901802009.735700.363003.073702.20210K562PPIG
CLTAENSG00000122705.121377.06010949.280700.536605.166304.14170K562PRPF8
CLTAENSG00000122705.12854.768501135.19800-0.409303.339502.33360K562PSIP1
CLTAENSG00000122705.121307.756501003.467800.382003.747902.98600K562PTBP1
CLTAENSG00000122705.122796.492801599.885000.805604.349303.69110K562PUS1
CLTAENSG00000122705.122175.809801558.955900.480907.929006.95660K562RBM15
CLTAENSG00000122705.12398.73740812.28200-1.026508.695306.18100K562SERBP1
CLTAENSG00000122705.121573.427101867.25520-0.247002.724001.91490K562SF3A3
CLTAENSG00000122705.121295.084001913.03930-0.5628013.7616011.89270K562SRPK2
CLTAENSG00000122705.12889.076402124.93240-1.2570016.0303013.09680K562STAU1
CLTAENSG00000122705.121564.505401785.38130-0.190502.058201.32080K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLTA is not available on ENCORE database.





11 RBPs can affect the splicing of CLTA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLTAENSG00000122705.12chr9+361975473619758536190933361912703620406436204176-0.087000.002230.03985excludedHepG2U2AF1
SECLTAENSG00000122705.12chr9+361975473619758536190852361912703620406436204176-0.162000.000010.00037excludedHepG2U2AF2
SECLTAENSG00000122705.12chr9+361975473619758536190933361912703620406436204176-0.061000.007550.08490excludedK562PUS1
A5SSCLTAENSG00000122705.12chr9+361908523619127036190852361909083619754736197585-0.086000.000130.07527shorterK562WDR43
MXECLTAENSG00000122705.12chr9+36197547361975853619897536199093361909333619127036204064362041760.098000.000280.010481includedHepG2MATR3
MXECLTAENSG00000122705.12chr9+3619754736197585361989803619909336190852361912703620406436204176-0.120000.000000.000412includedHepG2FUBP3
MXECLTAENSG00000122705.12chr9+36197547361975853619897536199093361909333619127036204064362041760.135000.000000.000191includedHepG2SF3B4
MXECLTAENSG00000122705.12chr9+36197547361975853619897536199093361909333619127036204064362041760.079000.000500.020901includedHepG2HNRNPC
MXECLTAENSG00000122705.12chr9+36197547361975853619897536199093361909333619127036204064362041760.107000.000050.004451includedHepG2DDX3X
MXECLTAENSG00000122705.12chr9+36197547361975853619897536199093361909333619127036204064362041760.067000.001030.039351includedHepG2HNRNPL
MXECLTAENSG00000122705.12chr9+36197547361975853619897536199093361909333619127036204064362041760.064000.000000.000351includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLTA is not avaliable on ENCORE database.