CLIP3

General Information

Gene Name       : CLIP3
Gene ID             : ENSG00000105270.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLIP3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLIP3ENSG00000105270.140.540.320.43ENCSR000AEF
HepG2CLIP3ENSG00000105270.140.120.200.16ENCSR985KAT
K562CLIP3ENSG00000105270.140.080.110.10ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLIP3 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on CLIP3 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CLIP3 is not avaliable on ENCORE database.






NO known proteins are bound to CLIP3 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for CLIP3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLIP3 is not available on ENCORE database.

  • 76 RBPs can affect the levels of CLIP3.  








The Knockdown/knockout RNA-Seq assay for CLIP3 is not available on ENCORE database.





76 RBPs can affect the gene expression of CLIP3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLIP3ENSG00000105270.10143.8825081.237800.824602.717301.78340HepG2ABCF1
CLIP3ENSG00000105270.1015.9667049.91690-1.644503.108502.54890HepG2AKAP1
CLIP3ENSG00000105270.1074.1407035.891301.046502.298501.44820HepG2BCCIP
CLIP3ENSG00000105270.1049.9737088.32230-0.821602.066201.54340HepG2BOP1
CLIP3ENSG00000105270.10205.9130095.515501.108103.912702.73940HepG2CCAR1
CLIP3ENSG00000105270.1099.0671042.715801.213502.892702.20020HepG2DKC1
CLIP3ENSG00000105270.10103.0123043.621801.239604.217403.43230HepG2EIF4A3
CLIP3ENSG00000105270.10127.5261070.398500.857103.039001.89740HepG2ESF1
CLIP3ENSG00000105270.10169.8920055.240001.6207010.255309.21740HepG2ETF1
CLIP3ENSG00000105270.10194.7737081.219801.261804.143002.90090HepG2FTO
CLIP3ENSG00000105270.1095.7384034.442501.474803.408602.54030HepG2FUBP3
CLIP3ENSG00000105270.10200.2947091.929801.123403.291302.59860HepG2GPKOW
CLIP3ENSG00000105270.1073.4227035.867401.033502.402101.79670HepG2HNRNPA1
CLIP3ENSG00000105270.10118.5316039.893501.570906.328305.31390HepG2HNRNPC
CLIP3ENSG00000105270.10161.3615087.729400.879103.508002.80890HepG2HNRNPLL
CLIP3ENSG00000105270.1088.1303045.259100.961303.138302.37100HepG2IGF2BP1
CLIP3ENSG00000105270.10227.6120089.451001.347302.175601.32450HepG2MTPAP
CLIP3ENSG00000105270.10198.1083077.781701.348707.711906.50630HepG2NSUN2
CLIP3ENSG00000105270.10114.8581054.652501.071402.224901.52340HepG2PRPF4
CLIP3ENSG00000105270.10125.6259053.029301.244205.400904.60320HepG2PUF60
CLIP3ENSG00000105270.1030.1418056.29200-0.901201.986601.46770HepG2PUM1
CLIP3ENSG00000105270.1012.0802045.01870-1.897903.192602.43900HepG2RAVER1
CLIP3ENSG00000105270.10141.9250053.152201.416803.327901.53020HepG2RBM39
CLIP3ENSG00000105270.1097.3420043.767701.153103.738403.12750HepG2NELFE
CLIP3ENSG00000105270.1087.0103040.765601.093703.294502.62970HepG2RECQL
CLIP3ENSG00000105270.1097.6921049.495800.980803.125902.40670HepG2RPLP0
CLIP3ENSG00000105270.1096.6750044.200901.129003.490602.42940HepG2RPS10
CLIP3ENSG00000105270.1092.9145039.624501.229404.068803.33840HepG2RPS19
CLIP3ENSG00000105270.10103.3712050.833701.023903.137602.28780HepG2RPS3A
CLIP3ENSG00000105270.10157.4305058.472301.428803.492301.92590HepG2SF1
CLIP3ENSG00000105270.1056.74160113.35360-0.998403.434302.68020HepG2SF3A3
CLIP3ENSG00000105270.10125.0020045.272701.465104.765604.12870HepG2SSB
CLIP3ENSG00000105270.1089.1859038.416501.215004.078003.41780HepG2TAF15
CLIP3ENSG00000105270.10176.0193038.516902.192103.950103.37500HepG2TIAL1
CLIP3ENSG00000105270.1056.6028097.05510-0.777902.254801.70250HepG2UTP3
CLIP3ENSG00000105270.1096.8558034.582101.485704.675503.74180HepG2XRN2
CLIP3ENSG00000105270.1088.3193053.943200.711201.877901.31010HepG2ZC3H8
CLIP3ENSG00000105270.1074.2905028.862201.363902.710901.50450K562ABCF1
CLIP3ENSG00000105270.1081.5754010.160503.0051010.829609.78030K562AQR
CLIP3ENSG00000105270.10182.3654055.778501.708904.779903.62120K562BOP1
CLIP3ENSG00000105270.1058.5638020.103201.542503.690201.99680K562BUD13
CLIP3ENSG00000105270.1043.580907.738102.493605.965504.26340K562CCAR1
CLIP3ENSG00000105270.10115.0949041.596001.468205.949503.75000K562CKAP4
CLIP3ENSG00000105270.10113.7368059.294300.939603.238202.38790K562CPSF6
CLIP3ENSG00000105270.1058.5006025.720501.185402.776002.12390K562DDX47
CLIP3ENSG00000105270.1031.128408.665001.844902.964101.58380K562DHX30
CLIP3ENSG00000105270.1029.678808.320101.834702.762301.41960K562DNAJC21
CLIP3ENSG00000105270.1024.059105.356402.167102.404201.55510K562EFTUD2
CLIP3ENSG00000105270.1032.508707.870002.046302.789801.78120K562EIF3A
CLIP3ENSG00000105270.1062.3955017.248701.854905.188103.92090K562EIF4G2
CLIP3ENSG00000105270.1090.7056022.058102.039807.377504.66280K562ESF1
CLIP3ENSG00000105270.1043.5884014.545601.583302.781601.51250K562EXOSC5
CLIP3ENSG00000105270.10250.4472060.358202.052807.784406.30590K562FMR1
CLIP3ENSG00000105270.10213.7878051.171002.0627010.617408.71750K562FTO
CLIP3ENSG00000105270.1045.5639014.811501.621103.588202.29360K562GLRX3
CLIP3ENSG00000105270.10147.1440056.600101.378303.395102.51850K562GPKOW
CLIP3ENSG00000105270.1061.5775018.421401.740903.888802.99770K562GRSF1
CLIP3ENSG00000105270.1051.2155015.528901.721502.851701.61080K562HNRNPA2B1
CLIP3ENSG00000105270.1080.7156015.112602.417008.389007.40050K562HNRNPC
CLIP3ENSG00000105270.1083.0880028.590001.539004.176602.41480K562ILF2
CLIP3ENSG00000105270.10194.6324048.359302.008803.192002.18080K562KRR1
CLIP3ENSG00000105270.10116.4236055.252801.075203.795502.75780K562METAP2
CLIP3ENSG00000105270.1056.1590018.386001.610803.650102.35170K562MSI2
CLIP3ENSG00000105270.1057.7280015.572001.890205.165304.08390K562MTPAP
CLIP3ENSG00000105270.1045.6197017.303901.398502.753502.00900K562NSUN2
CLIP3ENSG00000105270.10126.2767030.042702.071409.269807.00340K562PABPC1
CLIP3ENSG00000105270.1060.6261013.558902.160604.378703.05870K562PABPN1
CLIP3ENSG00000105270.1033.502407.760302.110003.783901.30290K562PARN
CLIP3ENSG00000105270.1062.6655018.501501.759904.388903.34140K562PCBP3
CLIP3ENSG00000105270.1036.2699014.187201.354102.129101.42710K562POLR2G
CLIP3ENSG00000105270.10253.0804018.820103.7491023.4004020.94450K562PUF60
CLIP3ENSG00000105270.1061.1707020.014901.611703.984302.68310K562PUM1
CLIP3ENSG00000105270.1078.8085019.614002.006406.811205.28530K562PUM2
CLIP3ENSG00000105270.1067.9105034.278500.986202.129501.64040K562PUS1
CLIP3ENSG00000105270.1069.1409016.678002.051504.138602.15390K562RBM39
CLIP3ENSG00000105270.1083.5744027.918401.581704.578402.50080K562RPS3A
CLIP3ENSG00000105270.1044.8430017.071601.393202.771201.95590K562SF3A3
CLIP3ENSG00000105270.10179.8666053.870301.739306.066704.59300K562SF3B1
CLIP3ENSG00000105270.1043.4113017.489901.311402.392501.51350K562SRPK2
CLIP3ENSG00000105270.1074.9247024.897701.589304.686702.98280K562STAU1
CLIP3ENSG00000105270.1074.6898027.887701.421203.254001.47710K562STIP1
CLIP3ENSG00000105270.1065.4898017.025901.943403.770501.99600K562SUPT6H
CLIP3ENSG00000105270.1030.474108.968401.764602.755802.04960K562TARDBP
CLIP3ENSG00000105270.1042.1033013.034301.691503.105202.10940K562TIAL1
CLIP3ENSG00000105270.1060.7988024.271601.324703.273301.73970K562TRIP6
CLIP3ENSG00000105270.1052.5882021.216501.309502.848401.42270K562UBE2L3
CLIP3ENSG00000105270.1030.053105.334902.493903.463902.31730K562UCHL5
CLIP3ENSG00000105270.1052.2399018.347501.509502.614201.91620K562UPF1
CLIP3ENSG00000105270.10118.5609033.081401.841409.050506.99850K562UTP3
CLIP3ENSG00000105270.1056.8905015.699701.857405.154903.94180K562WDR3
CLIP3ENSG00000105270.1065.6976016.324102.008706.809205.53600K562WDR43
CLIP3ENSG00000105270.1043.1510012.034801.842103.823302.29700K562WRN
CLIP3ENSG00000105270.1055.8154011.447902.285506.697405.26170K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLIP3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CLIP3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CLIP3 is not avaliable on ENCORE database.