CLIC2

General Information

Gene Name : CLIC2
Gene ID : ENSG00000155962.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CLIC2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CLIC2	ENSG00000155962.12	27.64	24.20	25.92	ENCSR000AEF
HepG2	CLIC2	ENSG00000155962.12	0.16	0.12	0.14	ENCSR985KAT
K562	CLIC2	ENSG00000155962.12	44.97	56.33	50.65	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CLIC2 is not avaliable on ENCORE database.

Proteins bound to RNA

CLIC2 RNA is bound by 12 proteins.

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eCLIP assay for CLIC2 is not avaliable on ENCORE database.

12 proteins are bound to CLIC2 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	154552491	154552543	-	intron-Distal	6.54066	22.68925	K562	EXOSC5
chrX	154528097	154528141	-	CDS,intron-Distal,intron-Proximal	5.33342	20.52075	K562	YBX3
chrX	154509335	154509353	-	CDS,intron-Distal	4.34233	14.35991	K562	YBX3
chrX	154547696	154547777	-	intron-Distal	5.93601	13.98859	K562	EXOSC5
chrX	154509353	154509357	-	CDS,intron-Distal	4.77477	13.92894	K562	YBX3
chrX	154544327	154544366	-	intron-Distal	5.42879	10.34146	K562	EXOSC5
chrX	154506938	154506995	-	3'-UTR,intron-Distal	4.18611	10.14641	K562	IGF2BP1
chrX	154508453	154508507	-	CDS,intron-Distal,intron-Proximal	3.74780	9.34382	K562	YBX3
chrX	154508469	154508509	-	CDS,intron-Distal,intron-Proximal	6.25398	8.90838	K562	RPS3
chrX	154506804	154506849	-	3'-UTR,intron-Distal	3.25761	8.67981	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 42 entries

eCLIP assay for CLIC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CLIC2 is not available on ENCORE database.
55 RBPs can affect the levels of CLIC2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CLIC2 is not available on ENCORE database.

55 RBPs can affect the gene expression of CLIC2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CLIC2	ENSG00000155962.8	1038.76220	1578.47290	-0.60370	12.81010	11.22350	K562	MTPAP
CLIC2	ENSG00000155962.8	699.76500	1283.88050	-0.87560	12.86600	10.62610	K562	PSIP1
CLIC2	ENSG00000155962.8	1156.52170	1934.83560	-0.74240	11.56090	10.24040	K562	EIF2S2
CLIC2	ENSG00000155962.8	2117.90810	1231.72330	0.78190	11.12600	9.03780	K562	UCHL5
CLIC2	ENSG00000155962.8	790.18700	1415.83740	-0.84140	9.89480	7.90040	K562	HNRNPM
CLIC2	ENSG00000155962.8	3098.02800	2305.64840	0.42610	8.75880	7.68070	K562	DDX47
CLIC2	ENSG00000155962.8	1171.10870	2325.85210	-0.98990	8.78060	7.03970	K562	MATR3
CLIC2	ENSG00000155962.8	2121.78400	1356.21790	0.64560	7.90880	6.40280	K562	BOP1
CLIC2	ENSG00000155962.8	2195.69400	1228.98490	0.83710	8.65890	6.37980	K562	RRP9
CLIC2	ENSG00000155962.8	2569.21590	1721.25290	0.57780	7.78120	6.28680	K562	FIP1L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 61 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CLIC2 is not available on ENCORE database.

6 RBPs can affect the splicing of CLIC2 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CLIC2	ENSG00000155962.8	chrX	-	154508099	154508219	154507268	154507353	154508437	154508619	0.10600	0.00000	0.00000	included	K562	XRCC6
SE	CLIC2	ENSG00000155962.8	chrX	-	154528348	154528458	154509250	154509357	154563679	154563955	-0.07000	0.00000	0.00004	excluded	K562	AQR
SE	CLIC2	ENSG00000155962.8	chrX	-	154508099	154508219	154507268	154507353	154508437	154508619	0.09000	0.00000	0.00000	included	K562	HNRNPC
SE	CLIC2	ENSG00000155962.8	chrX	-	154528348	154528458	154509250	154509357	154563679	154563955	-0.27900	0.00001	0.00436	excluded	K562	HNRNPM
SE	CLIC2	ENSG00000155962.8	chrX	-	154528348	154528458	154509250	154509357	154563679	154563955	0.14300	0.00111	0.09565	included	K562	CPSF6
SE	CLIC2	ENSG00000155962.8	chrX	-	154528348	154528458	154509250	154509357	154563679	154563955	-0.08500	0.00472	0.07082	excluded	K562	SF3B4

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CLIC2

General Information

Functions

Localization

Domains (AlphaFold: CLIC2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CLIC2 is not avaliable on ENCORE database.

12 proteins are bound to CLIC2 RNA:

eCLIP assay for CLIC2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CLIC2 is not available on ENCORE database.

55 RBPs can affect the gene expression of CLIC2 :

The Knockdown/knockout RNA-Seq assay for CLIC2 is not available on ENCORE database.

6 RBPs can affect the splicing of CLIC2 :

The Knockdown/knockout RNA-Seq assay for CLIC2 is not avaliable on ENCORE database.