CHST2

General Information

Gene Name       : CHST2
Gene ID             : ENSG00000175040.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CHST2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CHST2ENSG00000175040.55.286.355.81ENCSR000AEF
HepG2CHST2ENSG00000175040.50.000.000.00ENCSR985KAT
K562CHST2ENSG00000175040.513.8811.1112.50ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CHST2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CHST2 RNA is bound by 10 proteins.  







eCLIP assay for CHST2 is not avaliable on ENCORE database.





10 proteins are bound to CHST2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3142841328142841415+3'-UTR3.875638.86906K562PUM2
chr3142841492142841572+3'-UTR3.115897.04063K562YBX3
chr3142841696142841764+3'-UTR4.2860511.43847K562PABPC4
chr3142838892142838996+5'-UTR3.340783.44887K562FTO
chr3142838791142838892+5'-UTR4.4072218.67652K562FTO
chr3142839155142839239+5'-UTR4.244345.96826K562FTO
chr3142839191142839241+5'-UTR3.796725.58962K562RBM15
chr3142838735142838882+5'-UTR4.1552427.94397K562GEMIN5
chr3142838810142838870+5'-UTR3.302826.14814K562NIPBL
chr3142838648142838714+5'-UTR5.9691411.58987K562DDX3X
chr3142838769142838912+5'-UTR4.1865913.97206K562DROSHA
chr3142838755142838884+5'-UTR3.3098424.13520K562DDX3X
chr3142838751142838833+5'-UTR3.275433.91938K562UPF1
chr3142841000142841076+CDS3.302134.96117K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CHST2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CHST2 is not available on ENCORE database.

  • 63 RBPs can affect the levels of CHST2.  








The Knockdown/knockout RNA-Seq assay for CHST2 is not available on ENCORE database.





63 RBPs can affect the gene expression of CHST2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CHST2ENSG00000175040.41124.02660778.434500.529905.466203.74040K562AARS
CHST2ENSG00000175040.4617.10080813.70640-0.399003.816403.16910K562AGGF1
CHST2ENSG00000175040.4853.45670679.212300.329402.883301.34570K562AKAP1
CHST2ENSG00000175040.42412.079601733.228500.476705.278503.48710K562APOBEC3C
CHST2ENSG00000175040.41145.59350888.327200.366803.546402.50080K562ATP5C1
CHST2ENSG00000175040.41251.95360844.353400.568209.559607.75500K562BCLAF1
CHST2ENSG00000175040.4682.940901169.85510-0.776509.200507.56060K562BOP1
CHST2ENSG00000175040.4869.78620621.907800.483903.754302.48840K562CCAR1
CHST2ENSG00000175040.41473.85400972.493700.599708.225906.17950K562CCDC124
CHST2ENSG00000175040.41074.00300629.252400.771209.802507.60310K562CIRBP
CHST2ENSG00000175040.41026.04780640.567900.679603.155802.01770K562CSTF2
CHST2ENSG00000175040.41297.16290954.698700.442103.653001.96550K562DDX19B
CHST2ENSG00000175040.42097.225001714.512100.290603.866303.11440K562DDX47
CHST2ENSG00000175040.41162.14220687.193400.757906.375304.41580K562EEF2
CHST2ENSG00000175040.4880.55220663.941300.407302.819501.89710K562EFTUD2
CHST2ENSG00000175040.42069.900401604.285500.367505.217804.27480K562EIF2S2
CHST2ENSG00000175040.41005.92880710.842000.500802.542201.55460K562EIF3D
CHST2ENSG00000175040.4507.28000718.92010-0.503002.480701.70400K562EIF4A3
CHST2ENSG00000175040.41019.66540647.395800.655307.993105.89300K562EIF4B
CHST2ENSG00000175040.43214.719801964.315500.7106018.9374016.62570K562EIF4G2
CHST2ENSG00000175040.4758.630501072.88750-0.500003.773202.69080K562FTO
CHST2ENSG00000175040.41288.48130747.641200.7852015.3765014.05860K562FXR1
CHST2ENSG00000175040.4418.11020561.33440-0.425002.843301.39020K562G3BP1
CHST2ENSG00000175040.41019.20000665.649500.614505.450403.43980K562GEMIN5
CHST2ENSG00000175040.4613.77550972.36190-0.663802.715501.51230K562HNRNPA2B1
CHST2ENSG00000175040.4889.809501320.18510-0.569203.064801.40450K562HNRNPAB
CHST2ENSG00000175040.41933.316301549.388600.319302.922101.83280K562HNRNPL
CHST2ENSG00000175040.41798.100101327.552700.437606.191804.84400K562HNRNPU
CHST2ENSG00000175040.4935.42930587.305000.671404.824003.30970K562IGF2BP2
CHST2ENSG00000175040.41476.289701014.127300.541603.867202.74980K562KRR1
CHST2ENSG00000175040.4877.23760617.044700.507504.816503.69930K562MAGOH
CHST2ENSG00000175040.41026.54170615.764100.7372010.240708.36200K562MATR3
CHST2ENSG00000175040.4516.97430717.92900-0.473703.516202.11760K562NCBP2
CHST2ENSG00000175040.41160.40960654.291300.826507.229404.95320K562NONO
CHST2ENSG00000175040.4759.18950548.982400.467603.660702.53780K562PCBP2
CHST2ENSG00000175040.4928.51140646.092300.523104.237703.31050K562PRPF8
CHST2ENSG00000175040.41274.41990599.511801.0879023.0777021.23630K562PTBP1
CHST2ENSG00000175040.41764.313702233.54770-0.340204.743603.47470K562PUM2
CHST2ENSG00000175040.4441.24560839.82510-0.9285011.2477010.20190K562PUS1
CHST2ENSG00000175040.41794.05110574.756501.6421045.5187041.98000K562RBM22
CHST2ENSG00000175040.4806.16400560.357300.524604.179802.35080K562RBM34
CHST2ENSG00000175040.4942.90840604.863600.640406.387204.64290K562NELFE
CHST2ENSG00000175040.4927.33640658.090100.494703.263202.37420K562RPS19
CHST2ENSG00000175040.4790.85610346.985201.188403.929602.70940K562RPS3
CHST2ENSG00000175040.41423.304701041.211900.450904.596603.19310K562SAFB
CHST2ENSG00000175040.4375.26540778.43000-1.052704.367602.75690K562SF1
CHST2ENSG00000175040.4732.67100350.118601.0652017.6175015.29940K562SF3B4
CHST2ENSG00000175040.4939.75460587.742700.677008.166606.96160K562SRSF1
CHST2ENSG00000175040.4536.98740335.011000.680605.526403.94370K562SRSF4
CHST2ENSG00000175040.4353.28660568.80720-0.687105.030203.21520K562SSB
CHST2ENSG00000175040.41404.312401839.71360-0.389603.095501.75950K562STAU1
CHST2ENSG00000175040.4578.703001069.15820-0.885604.140902.24890K562SUPT6H
CHST2ENSG00000175040.41098.34620625.507700.812108.667506.82430K562SUPV3L1
CHST2ENSG00000175040.4199.46170330.52430-0.728602.981101.44130K562TAF15
CHST2ENSG00000175040.41331.81570594.788101.1628020.6510018.35940K562TARDBP
CHST2ENSG00000175040.4839.29670573.752300.548705.587604.35940K562TIA1
CHST2ENSG00000175040.4764.79330563.130300.441503.300102.08870K562TRA2A
CHST2ENSG00000175040.42559.699102009.814100.348805.921404.03340K562TROVE2
CHST2ENSG00000175040.4500.08330326.379900.615503.977202.61720K562U2AF1
CHST2ENSG00000175040.4533.04630337.081200.661106.362205.15080K562U2AF2
CHST2ENSG00000175040.41925.345402416.62650-0.327903.884702.21370K562UBE2L3
CHST2ENSG00000175040.41047.601101739.33570-0.7314014.8512013.34160K562UPF1
CHST2ENSG00000175040.4973.57840674.188300.530004.435002.77270K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CHST2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CHST2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CHST2 is not avaliable on ENCORE database.