CBFA2T2

General Information

Gene Name       : CBFA2T2
Gene ID             : ENSG00000078699.21
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CBFA2T2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CBFA2T2ENSG00000078699.212.733.573.15ENCSR000AEF
HepG2CBFA2T2ENSG00000078699.2110.768.389.57ENCSR985KAT
K562CBFA2T2ENSG00000078699.215.265.495.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CBFA2T2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CBFA2T2 RNA is bound by 30 proteins.  







eCLIP assay for CBFA2T2 is not avaliable on ENCORE database.





30 proteins are bound to CBFA2T2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr203223403832234102+3'-UTR3.165154.06711K562AKAP1
chr203223267132232812+3'-UTR4.449095.58306HepG2AKAP1
chr203223272432232856+3'-UTR4.433889.59063HepG2UPF1
chr203207794532078017+5'-UTR3.558714.38588HepG2DDX3X
chr203207801132078131+5'-UTR,CDS,intron-Proximal3.094013.61795HepG2SRSF1
chr203222817432228347+5'-UTR,CDS,intron-Proximal3.147346.87969HepG2GRWD1
chr203207793732078015+5'-UTR3.224105.38934HepG2NCBP2
chr203207792632078006+5'-UTR4.015935.52342HepG2PPIG
chr203221615732216240+CDS3.366874.06531HepG2GRWD1
chr203221108732211152+CDS,intron-Proximal3.475843.66187K562ZNF622
chr203221109932211198+CDS,intron-Proximal3.904197.34514K562PRPF8
chr203221615532216249+CDS,intron-Proximal4.215077.49468HepG2BCLAF1
chr203221092032211054+CDS,intron-Proximal4.033623.39858K562IGF2BP2
chr203221102932211040+CDS5.302279.27112K562RBM15
chr203219905132199165+CDS,intron-Proximal3.788646.69386HepG2GRWD1
chr203221102632211117+CDS,intron-Proximal3.088853.92610HepG2GRWD1
chr203219893332199051+CDS4.034408.70622HepG2GRWD1
chr203221250232212574+CDS,intron-Proximal3.899664.57180HepG2AQR
chr203222826732228386+CDS,intron-Proximal4.281183.20743HepG2PPIG
chr203222833032228396+CDS,intron-Proximal4.955115.69951K562AQR
chr203221766732217725+CDS,intron-Proximal3.842093.38114HepG2GRWD1
chr203221104032211091+CDS3.8351310.33521K562RBM15
chr203221267932212757+CDS3.153325.94292K562ZNF622
chr203221761632217726+CDS,intron-Proximal4.364644.39669K562BUD13
chr203220728132207380+CDS,intron-Proximal5.268287.21923HepG2BUD13
chr203221108732211168+CDS,intron-Proximal3.094615.37660HepG2PRPF8
chr203221615332216242+CDS,intron-Proximal3.833624.82082K562ZNF622
chr203221250432212577+CDS,intron-Proximal3.992115.83621K562AQR
chr203221110132211108+CDS,intron-Proximal4.7218310.08262K562AQR
chr203221740032217519+intron-Distal,intron-Proximal4.492464.72162K562KHSRP
chr203216881032168914+intron-Distal4.916968.48623HepG2PCBP2
chr203219571132195793+intron-Distal5.3999611.11632HepG2QKI
chr203215239232152441+intron-Distal3.870243.60940HepG2HNRNPC
chr203208524532085342+intron-Distal3.352543.06005HepG2QKI
chr203212125732121338+intron-Distal3.578405.95946K562KHSRP
chr203219517532195332+intron-Distal3.666843.02234K562KHSRP
chr203210872232108740+intron-Distal3.066656.15073HepG2HNRNPL
chr203221603132216062+intron-Distal,intron-Proximal4.254884.10688K562KHSRP
chr203218337132183433+intron-Distal3.743223.38413HepG2HNRNPC
chr203208445932084547+intron-Distal3.689064.29698HepG2SFPQ
chr203212126032121382+intron-Distal3.113453.06355HepG2KHSRP
chr203210885132108930+intron-Distal3.164935.47357K562HNRNPL
chr203214364332143725+intron-Distal3.001555.37771HepG2PTBP1
chr203210814332108238+intron-Distal3.870355.49084HepG2SFPQ
chr203221399532214048+intron-Distal5.1814111.82991HepG2XPO5
chr203212133832121413+intron-Distal3.345624.72639K562KHSRP
chr203213204732132112+intron-Distal3.824255.57156HepG2QKI
chr203209518032095245+intron-Distal3.909933.08314K562TARDBP
chr203209503832095095+intron-Distal3.511864.63118HepG2HNRNPM
chr203220584732205963+intron-Distal4.547706.73684K562KHSRP
chr203210879732108851+intron-Distal3.421669.66311K562HNRNPL
chr203210884432108933+intron-Distal3.6124410.35957K562AGGF1
chr203209665332096710+intron-Distal4.143373.60235HepG2HNRNPM
chr203207813532078218+intron-Distal,intron-Proximal3.764936.09306K562NONO
chr203209671032096771+intron-Distal5.368708.05797HepG2HNRNPM
chr203210874032108799+intron-Distal3.5987515.98573HepG2HNRNPL
chr203207833532078397+intron-Distal3.194373.69530HepG2CSTF2T
chr203211728332117409+intron-Distal3.358564.32282HepG2ILF3
chr203209224132092304+intron-Distal3.885127.11398HepG2HNRNPC
chr203219569632195784+intron-Distal3.858963.27714HepG2HNRNPL
chr203210885832108878+intron-Distal3.376783.27276HepG2HNRNPL
chr203209222732092241+intron-Distal4.116174.73695HepG2HNRNPC
chr203221599332216031+intron-Distal4.396564.54401K562KHSRP
chr203221596632216059+intron-Distal,intron-Proximal4.438204.53660HepG2KHSRP
chr203209467332094733+intron-Distal4.189933.62366HepG2HNRNPM
chr203221112332211169+intron-Proximal4.153704.71325HepG2RBM22
chr203207811632078199+intron-Proximal3.106267.01804HepG2CSTF2T
chr203221606232216127+intron-Proximal4.178883.42844K562KHSRP
chr203221113132211179+intron-Proximal3.528373.24842K562RBM22
chr203221110832211127+intron-Proximal5.9535313.18785K562AQR
chr203207813132078207+intron-Proximal3.293205.77728HepG2EFTUD2
chr203221112732211168+intron-Proximal6.3492317.35737K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CBFA2T2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CBFA2T2 is not available on ENCORE database.

  • 52 RBPs can affect the levels of CBFA2T2.  








The Knockdown/knockout RNA-Seq assay for CBFA2T2 is not available on ENCORE database.





52 RBPs can affect the gene expression of CBFA2T2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CBFA2T2ENSG00000078699.17919.459301511.33390-0.717006.832206.03770HepG2AKAP1
CBFA2T2ENSG00000078699.17927.770901125.55640-0.278802.337701.73820HepG2CELF1
CBFA2T2ENSG00000078699.17619.58510788.90270-0.348503.752103.01440HepG2DNAJC2
CBFA2T2ENSG00000078699.17741.05270981.93920-0.406102.763801.84450HepG2EEF2
CBFA2T2ENSG00000078699.17568.44370818.56970-0.526104.167102.80300HepG2EFTUD2
CBFA2T2ENSG00000078699.171896.731901634.185900.214802.159401.61580HepG2ETF1
CBFA2T2ENSG00000078699.171132.79740864.372300.390102.453701.84700HepG2GPKOW
CBFA2T2ENSG00000078699.17917.641601112.19270-0.277402.353401.48310HepG2HNRNPA2B1
CBFA2T2ENSG00000078699.171262.72970825.126600.613805.844704.85240HepG2HNRNPF
CBFA2T2ENSG00000078699.171081.79010824.890000.391002.692802.07010HepG2HNRNPLL
CBFA2T2ENSG00000078699.17735.32850887.85230-0.271902.411701.84280HepG2HNRNPU
CBFA2T2ENSG00000078699.171349.854601797.66530-0.413302.669401.46370HepG2HSPD1
CBFA2T2ENSG00000078699.171275.26650812.496100.650305.777104.77020HepG2IGF2BP1
CBFA2T2ENSG00000078699.17761.17390906.90850-0.252702.416201.72580HepG2ILF2
CBFA2T2ENSG00000078699.17596.43130794.15010-0.413103.098001.89590HepG2LARP7
CBFA2T2ENSG00000078699.17868.167801341.01970-0.627305.502204.63700HepG2MATR3
CBFA2T2ENSG00000078699.17589.81680834.22870-0.500202.750701.70190HepG2METAP2
CBFA2T2ENSG00000078699.171047.211101304.16720-0.316603.562402.89230HepG2PCBP1
CBFA2T2ENSG00000078699.171490.956801038.129600.522208.872707.59980HepG2PRPF4
CBFA2T2ENSG00000078699.171024.074801327.07560-0.373904.998404.30770HepG2PTBP1
CBFA2T2ENSG00000078699.17992.067801216.03950-0.293703.395102.75200HepG2PUM1
CBFA2T2ENSG00000078699.171787.792801437.177400.314803.345402.66800HepG2QKI
CBFA2T2ENSG00000078699.17626.59490982.13080-0.648403.332902.56180HepG2RAVER1
CBFA2T2ENSG00000078699.171607.448201304.360400.301302.595901.93970HepG2RBM25
CBFA2T2ENSG00000078699.171217.889801476.87720-0.278202.831102.28510HepG2NELFE
CBFA2T2ENSG00000078699.171318.28010889.133300.568104.428803.59490HepG2RPLP0
CBFA2T2ENSG00000078699.17424.39720580.15740-0.451002.635501.86600HepG2RRP9
CBFA2T2ENSG00000078699.171274.69020816.455000.642607.351606.25030HepG2SF3B1
CBFA2T2ENSG00000078699.17723.41750922.02510-0.350004.047503.29390HepG2SMN1
CBFA2T2ENSG00000078699.171264.72690908.457700.477202.516401.77300HepG2SNRNP70
CBFA2T2ENSG00000078699.171244.186901442.10890-0.213001.934901.51920HepG2SRSF1
CBFA2T2ENSG00000078699.17889.275101131.06440-0.347003.585302.88930HepG2SRSF5
CBFA2T2ENSG00000078699.171112.67720810.721900.456702.101101.48470HepG2SRSF7
CBFA2T2ENSG00000078699.17987.540101173.25560-0.248602.362901.84510HepG2SRSF9
CBFA2T2ENSG00000078699.171667.976001339.435400.316404.293103.68380HepG2SSB
CBFA2T2ENSG00000078699.171048.349901286.28520-0.295103.226202.56540HepG2SUCLG1
CBFA2T2ENSG00000078699.171396.287601071.887100.381302.675702.05680HepG2U2AF1
CBFA2T2ENSG00000078699.17979.906301286.55130-0.392805.023804.25730HepG2UTP3
CBFA2T2ENSG00000078699.171289.635101465.58070-0.184501.930401.45150HepG2ZNF622
CBFA2T2ENSG00000078699.171665.85140840.099400.9875017.0315015.73750K562AQR
CBFA2T2ENSG00000078699.171299.04550941.109300.464906.682605.73420K562DDX47
CBFA2T2ENSG00000078699.17904.13130510.858000.823507.866805.97140K562EIF3D
CBFA2T2ENSG00000078699.17738.44680499.383600.564204.938303.83860K562EIF4A3
CBFA2T2ENSG00000078699.171485.653601098.117800.436005.959304.59730K562EIF4G2
CBFA2T2ENSG00000078699.17724.64830560.005300.371702.229001.45940K562FMR1
CBFA2T2ENSG00000078699.17664.63850525.409500.339002.006801.32750K562GPKOW
CBFA2T2ENSG00000078699.17669.34310827.82220-0.306601.951501.31100K562GRSF1
CBFA2T2ENSG00000078699.17707.28960512.867900.463603.473102.48670K562METAP2
CBFA2T2ENSG00000078699.171609.212901198.141100.425504.266703.26010K562PUF60
CBFA2T2ENSG00000078699.17714.39890916.17280-0.358902.176701.68350K562PUS1
CBFA2T2ENSG00000078699.17673.52940472.937300.510003.103202.23630K562RPS19
CBFA2T2ENSG00000078699.17979.05320811.281600.271102.569901.66280K562SRPK2
CBFA2T2ENSG00000078699.17605.59860431.000300.490603.126802.12560K562TIAL1
CBFA2T2ENSG00000078699.17915.98410757.142200.274702.585101.76460K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CBFA2T2 is not available on ENCORE database.





6 RBPs can affect the splicing of CBFA2T2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECBFA2T2ENSG00000078699.17chr20+3216177932162067320779223207810732194761321949050.196000.000140.03614includedK562FXR2
SECBFA2T2ENSG00000078699.17chr20+3216177932162067320779223207810732194761321949050.119000.001270.07635includedK562HNRNPUL1
SECBFA2T2ENSG00000078699.17chr20+322115783221166032210920322111023221256932212823-0.213000.001760.06229excludedK562SF3B1
SECBFA2T2ENSG00000078699.17chr20+3216177932162067320779223207810732194761321949050.144000.000760.09879includedK562NPM1
A5SSCBFA2T2ENSG00000078699.17chr20+3222812032228365322281203222833732232152322378420.142000.002320.03817longerK562AQR
MXECBFA2T2ENSG00000078699.17chr20+3219889932199141322073223220741232194761321949053221092032211102-0.267000.000280.034362includedHepG2PCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CBFA2T2 is not avaliable on ENCORE database.