CACFD1

General Information

Gene Name       : CACFD1
Gene ID             : ENSG00000160325.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CACFD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CACFD1ENSG00000160325.140.090.240.16ENCSR000AEF
HepG2CACFD1ENSG00000160325.1414.893.369.12ENCSR985KAT
K562CACFD1ENSG00000160325.140.270.110.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CACFD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CACFD1 RNA is bound by 6 proteins.  







eCLIP assay for CACFD1 is not avaliable on ENCORE database.





6 proteins are bound to CACFD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9136334364136334447+3'-UTR4.207569.44844HepG2AKAP1
chr9136334591136334645+3'-UTR5.113757.27295HepG2AKAP1
chr9136335119136335195+3'-UTR5.4281121.45701HepG2UPF1
chr9136335348136335401+3'-UTR3.548233.06830K562UPF1
chr9136334177136334233+3'-UTR3.667809.45773HepG2AKAP1
chr9136335320136335402+3'-UTR3.188668.17836HepG2DDX55
chr9136335124136335189+3'-UTR5.8957314.55061HepG2AKAP1
chr9136334405136334531+3'-UTR6.3810519.77032HepG2UPF1
chr9136333915136333998+3'-UTR5.9102315.92060HepG2UPF1
chr9136335335136335430+3'-UTR5.3417216.85427HepG2UPF1
chr9136334681136334727+3'-UTR5.035088.61963HepG2AKAP1
chr9136333906136333954+3'-UTR5.3665110.29040HepG2AKAP1
chr9136334603136334643+3'-UTR4.836286.71037HepG2UPF1
chr9136334233136334291+3'-UTR4.313409.26660HepG2AKAP1
chr9136333998136334065+3'-UTR5.6177511.00768HepG2UPF1
chr9136334340136334386+3'-UTR5.206407.45692HepG2UPF1
chr9136334845136334898+3'-UTR3.375303.61733HepG2XPO5
chr9136334803136334843+3'-UTR4.911127.27295HepG2AKAP1
chr9136334172136334281+3'-UTR6.7169025.23263HepG2UPF1
chr9136335325136335437+3'-UTR6.8913633.90147HepG2AKAP1
chr9136334066136334172+3'-UTR6.7358523.69736HepG2UPF1
chr9136334070136334169+3'-UTR3.865249.17856HepG2AKAP1
chr9136325155136325242+5'-UTR,CDS4.216467.09180HepG2DDX3X
chr9136333088136333150+CDS3.223453.05161HepG2PPIG
chr9136325505136325564+intron-Distal4.411833.37054HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CACFD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CACFD1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of CACFD1.  








The Knockdown/knockout RNA-Seq assay for CACFD1 is not available on ENCORE database.





77 RBPs can affect the gene expression of CACFD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CACFD1ENSG00000160325.10887.16710458.337100.9527018.5982017.11440HepG2AUH
CACFD1ENSG00000160325.10413.71590185.182801.159606.620705.29530HepG2BCLAF1
CACFD1ENSG00000160325.10446.2425066.954602.7365014.9096013.67400HepG2BOP1
CACFD1ENSG00000160325.10943.54410608.299200.633202.022201.35480HepG2CIRBP
CACFD1ENSG00000160325.10555.33840239.235701.214806.821405.62060HepG2CNOT7
CACFD1ENSG00000160325.10174.1826061.460101.502802.499401.84060HepG2CPSF6
CACFD1ENSG00000160325.10190.59470110.292700.789104.070902.83360HepG2YBX3
CACFD1ENSG00000160325.10428.05380216.881900.9808012.2792010.89670HepG2DAZAP1
CACFD1ENSG00000160325.101482.53320741.112201.000205.184704.35190HepG2DDX3X
CACFD1ENSG00000160325.10197.98290104.446700.922505.096303.79030HepG2DHX30
CACFD1ENSG00000160325.10660.97330427.668500.628006.133305.20050HepG2DKC1
CACFD1ENSG00000160325.10237.24930108.286701.131408.732007.53830HepG2DNAJC21
CACFD1ENSG00000160325.10211.08090107.348600.975407.202206.21890HepG2DNAJC2
CACFD1ENSG00000160325.101327.88200676.066900.973802.868802.21850HepG2EIF4A3
CACFD1ENSG00000160325.10358.73230204.942900.807605.517604.38900HepG2EIF4G2
CACFD1ENSG00000160325.101051.68100526.246800.998805.664704.85520HepG2ETF1
CACFD1ENSG00000160325.10101.39810202.23670-0.996002.624901.50690HepG2FASTKD2
CACFD1ENSG00000160325.10271.03020481.89980-0.830307.831206.54180HepG2FUBP3
CACFD1ENSG00000160325.10160.4147069.648401.203505.181604.32290HepG2GPKOW
CACFD1ENSG00000160325.10394.27000202.730000.959503.302501.80240HepG2HNRNPA0
CACFD1ENSG00000160325.10278.21600109.324301.347502.412101.80550HepG2HNRNPA1
CACFD1ENSG00000160325.10381.39590121.609101.648903.748602.95070HepG2HNRNPC
CACFD1ENSG00000160325.10412.51810126.426901.7061027.5109025.60530HepG2HNRNPF
CACFD1ENSG00000160325.10225.3822066.468701.7615012.6243011.40950HepG2HNRNPLL
CACFD1ENSG00000160325.10325.58380120.804701.4303017.5658016.14170HepG2HNRNPU
CACFD1ENSG00000160325.10437.44700124.494201.8129012.1477010.73650HepG2IGF2BP1
CACFD1ENSG00000160325.10400.88220228.392300.811602.764101.57420HepG2KHDRBS1
CACFD1ENSG00000160325.10353.96940206.393500.778104.363103.31370HepG2LARP4
CACFD1ENSG00000160325.10271.08370183.178700.565402.442001.30760HepG2LIN28B
CACFD1ENSG00000160325.10266.94170157.782500.758504.234002.46410HepG2NIP7
CACFD1ENSG00000160325.10581.11690215.057701.434005.429904.36840HepG2NOL12
CACFD1ENSG00000160325.10492.01530666.28040-0.437404.003903.30150HepG2PCBP1
CACFD1ENSG00000160325.10267.12410107.747101.3098012.5977011.08960HepG2PPIL4
CACFD1ENSG00000160325.10551.51230678.00730-0.297902.054901.57080HepG2PTBP1
CACFD1ENSG00000160325.10646.45050205.281501.6548028.3977026.76090HepG2PUF60
CACFD1ENSG00000160325.10388.68320217.903700.834808.712607.78450HepG2PUM1
CACFD1ENSG00000160325.10304.86810217.751800.485402.350401.73070HepG2PUM2
CACFD1ENSG00000160325.10716.87990455.329000.654704.941804.16150HepG2PUS1
CACFD1ENSG00000160325.10630.66000439.841900.519804.771504.13780HepG2RBM22
CACFD1ENSG00000160325.10363.26380210.436300.787504.791203.46690HepG2RBM27
CACFD1ENSG00000160325.10566.54450754.52210-0.413403.570202.97160HepG2NELFE
CACFD1ENSG00000160325.10537.26060702.79820-0.387503.207102.54980HepG2RECQL
CACFD1ENSG00000160325.10439.82070136.195701.691107.196206.17000HepG2RPLP0
CACFD1ENSG00000160325.10391.36580156.658201.320808.447006.87380HepG2RPS10
CACFD1ENSG00000160325.10420.71940194.066301.116209.440708.03740HepG2RPS2
CACFD1ENSG00000160325.10472.00040240.646000.971804.238503.24770HepG2RPS3A
CACFD1ENSG00000160325.10199.30710107.578400.889505.475304.62150HepG2SAFB2
CACFD1ENSG00000160325.10500.21550344.516200.537902.819602.13930HepG2SF3A3
CACFD1ENSG00000160325.10283.9628065.778502.1099020.9042019.16010HepG2SF3B1
CACFD1ENSG00000160325.10509.73240196.809001.3728023.9649022.30590HepG2SLBP
CACFD1ENSG00000160325.10201.06050125.448600.680402.313301.71740HepG2SMN1
CACFD1ENSG00000160325.10329.50490163.010101.015205.017003.69550HepG2SMNDC1
CACFD1ENSG00000160325.10304.70770155.568800.969804.552702.45570HepG2SND1
CACFD1ENSG00000160325.10340.89430736.75170-1.1119019.9440018.91970HepG2SRSF1
CACFD1ENSG00000160325.10143.1937070.813101.015803.426102.29970HepG2SRSF3
CACFD1ENSG00000160325.10458.06860202.671601.176307.227506.28200HepG2SRSF5
CACFD1ENSG00000160325.10432.98380124.210901.8014024.6898023.01780HepG2SRSF7
CACFD1ENSG00000160325.10477.50110599.41320-0.328002.413201.89050HepG2SRSF9
CACFD1ENSG00000160325.10941.04130431.313201.1254027.0887025.85670HepG2SSB
CACFD1ENSG00000160325.10500.75400230.505401.1192016.0730014.77290HepG2SUCLG1
CACFD1ENSG00000160325.10367.62250213.677500.782702.319901.45390HepG2SUPT6H
CACFD1ENSG00000160325.10183.74520662.30660-1.8498039.8677038.06540HepG2TAF15
CACFD1ENSG00000160325.10160.6530064.843301.308804.602403.69870HepG2TARDBP
CACFD1ENSG00000160325.10451.05630608.47880-0.431902.374101.59810HepG2TIA1
CACFD1ENSG00000160325.10405.55580117.361801.788807.356606.61220HepG2TIAL1
CACFD1ENSG00000160325.10227.65430118.435100.942606.931206.10920HepG2TRIM56
CACFD1ENSG00000160325.10408.97620200.532301.028108.042906.42810HepG2TUFM
CACFD1ENSG00000160325.10413.83120212.247700.963202.044801.33080HepG2UBE2L3
CACFD1ENSG00000160325.10545.25190305.534700.8355011.3579010.11840HepG2UPF1
CACFD1ENSG00000160325.10413.45280314.035600.396702.532301.52430HepG2UTP18
CACFD1ENSG00000160325.10620.77980215.570401.5258015.0524012.60630HepG2XPO5
CACFD1ENSG00000160325.10382.68910205.390700.897703.794702.95460HepG2XRN2
CACFD1ENSG00000160325.10279.76380158.742700.817406.385905.43480HepG2ZC3H8
CACFD1ENSG00000160325.10439.70400336.027600.387902.897602.34100HepG2ZNF622
CACFD1ENSG00000160325.1052.1929018.552501.492103.411902.62630K562EIF2S2
CACFD1ENSG00000160325.1075.3034024.713501.607304.200403.27190K562GRSF1
CACFD1ENSG00000160325.1040.025004.604503.119703.818803.13130K562HNRNPC
CACFD1ENSG00000160325.1040.9059010.608201.947002.224301.49630K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CACFD1 is not available on ENCORE database.





2 RBPs can affect the splicing of CACFD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECACFD1ENSG00000160325.10chr9+136333461136333586136333042136333150136333684136334500-0.079000.001470.07955excludedHepG2RBM22
SECACFD1ENSG00000160325.10chr9+136330443136330569136328604136328677136333042136333150-0.231000.002460.09425excludedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CACFD1 is not avaliable on ENCORE database.