BRAT1

General Information

Gene Name       : BRAT1
Gene ID             : ENSG00000106009.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BRAT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BRAT1ENSG00000106009.150.482.241.36ENCSR000AEF
HepG2BRAT1ENSG00000106009.1516.102.429.26ENCSR985KAT
K562BRAT1ENSG00000106009.1514.653.929.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BRAT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BRAT1 RNA is bound by 14 proteins.  







eCLIP assay for BRAT1 is not avaliable on ENCORE database.





14 proteins are bound to BRAT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr725829002582974-3'-UTR,CDS,intron-Distal,intron-Proximal3.094193.68924HepG2PRPF4
chr725818162581892-3'-UTR,CDS,intron-Distal,intron-Proximal4.0438612.07514HepG2SF3B4
chr725831302583229-3'-UTR,CDS,intron-Distal,intron-Proximal3.960496.88148K562BUD13
chr725829532582983-3'-UTR,CDS,intron-Distal,intron-Proximal3.324685.28154K562SF3B4
chr725829322582958-3'-UTR,CDS,intron-Distal,intron-Proximal5.324214.75872K562DDX24
chr725829482583004-3'-UTR,CDS,intron-Distal,intron-Proximal3.993538.70492HepG2SF3A3
chr725818182581857-3'-UTR,CDS,intron-Distal,intron-Proximal5.2106615.60758K562SF3B4
chr725831782583229-3'-UTR,CDS,intron-Distal,intron-Proximal3.905013.54514K562TIA1
chr725828862582949-3'-UTR,CDS,intron-Distal4.371067.79455HepG2PPIG
chr725833742583421-CDS,intron-Distal3.970446.08299HepG2PPIG
chr725791772579199-CDS,intron-Distal,intron-Proximal4.849946.91190HepG2PPIG
chr725813502581420-CDS,intron-Distal,intron-Proximal3.137367.61395HepG2PPIG
chr725791992579276-CDS,intron-Distal4.384418.40792HepG2PPIG
chr725805902580614-CDS,intron-Distal,intron-Proximal3.837138.77060K562AQR
chr725794892579544-CDS,intron-Distal,intron-Proximal5.027316.44303K562AQR
chr725814492581510-CDS,intron-Distal,intron-Proximal3.459288.47924K562SF3B4
chr725779862578041-CDS,intron-Distal,intron-Proximal4.039913.56466K562LSM11
chr725814312581476-CDS,intron-Distal,intron-Proximal3.392943.65452K562BUD13
chr725779872578045-CDS,intron-Distal,intron-Proximal4.721074.48994K562RBM15
chr725805062580627-CDS,intron-Distal,intron-Proximal3.202399.33410HepG2PRPF8
chr725779052578056-CDS,intron-Distal,intron-Proximal3.748496.16249HepG2RBM15
chr725779362577987-CDS,intron-Distal,intron-Proximal4.408274.48994K562RBM15
chr725835072583577-CDS,intron-Distal3.173686.00788HepG2PPIG
chr725795202579573-CDS,intron-Distal,intron-Proximal3.494943.60305HepG2SF3B4
chr725844982584531-intron-Distal,intron-Proximal5.8082411.65826K562AQR
chr725805042580590-intron-Distal,intron-Proximal6.2823312.80845K562SF3B4
chr725805632580590-intron-Distal,intron-Proximal4.6045914.61777K562AQR
chr725805082580610-intron-Distal,intron-Proximal4.4146712.34418K562BUD13
chr725831362583217-intron-Distal,intron-Proximal3.917583.63122HepG2PRPF4
chr725795252579623-intron-Distal,intron-Proximal4.569046.25632HepG2SF3A3
chr725827512582813-intron-Distal,intron-Proximal4.078544.36329HepG2PRPF4
chr725845312584543-intron-Distal,intron-Proximal5.590319.23760K562AQR
chr725818572581889-intron-Distal,intron-Proximal5.7137515.55949K562SF3B4
chr725805172580574-intron-Distal,intron-Proximal3.941038.57308HepG2BUD13
chr725805272580608-intron-Distal,intron-Proximal4.154285.20093K562DDX24
chr725826702582698-intron-Distal5.136024.48364K562DDX24
chr725940942594139-intron-Distal,intron-Proximal4.103813.01266HepG2SF3B4
chr725805172580563-intron-Distal,intron-Proximal4.764279.46915K562AQR
chr725824192582481-intron-Distal4.043563.91671HepG2RBFOX2
chr725831342583181-intron-Distal,intron-Proximal3.474714.06013K562PRPF8
chr725800802580126-intron-Distal4.123453.83824K562BUD13
chr725825992582705-intron-Distal4.6003510.40891K562PRPF8
chr725805162580595-intron-Distal,intron-Proximal5.234165.52007HepG2XRN2
chr725805192580591-intron-Distal,intron-Proximal5.4084613.79836HepG2EFTUD2
chr725827582582810-intron-Distal,intron-Proximal5.639319.62108K562SF3B4
chr725802412580280-intron-Distal4.211885.29549HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BRAT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BRAT1 is not available on ENCORE database.

  • 96 RBPs can affect the levels of BRAT1.  








The Knockdown/knockout RNA-Seq assay for BRAT1 is not available on ENCORE database.





96 RBPs can affect the gene expression of BRAT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BRAT1ENSG00000106009.11533.31020250.879401.087902.913901.94910HepG2BCCIP
BRAT1ENSG00000106009.11150.19040245.23040-0.707302.276701.57160HepG2CALR
BRAT1ENSG00000106009.11677.52710568.725100.252401.930701.36170HepG2CKAP4
BRAT1ENSG00000106009.11364.63300232.739300.647602.790702.02240HepG2CNOT7
BRAT1ENSG00000106009.11229.53210145.209200.660503.665902.49510HepG2YBX3
BRAT1ENSG00000106009.11392.42130293.890700.417002.826902.07830HepG2DAZAP1
BRAT1ENSG00000106009.11212.15440145.396700.545002.407501.32940HepG2DDX1
BRAT1ENSG00000106009.11648.63950432.986500.583002.012101.46970HepG2DDX3X
BRAT1ENSG00000106009.11273.90660142.563100.942007.470606.36190HepG2DNAJC21
BRAT1ENSG00000106009.11310.17880141.335401.133906.134405.22020HepG2DNAJC2
BRAT1ENSG00000106009.11537.80380357.550700.588802.046001.52710HepG2EIF2S1
BRAT1ENSG00000106009.111119.85060853.607100.391602.824602.21870HepG2ETF1
BRAT1ENSG00000106009.11295.86740420.47390-0.507103.088502.26120HepG2FUBP3
BRAT1ENSG00000106009.11688.67450398.937500.787603.467002.69780HepG2FXR1
BRAT1ENSG00000106009.11549.39400369.866000.570702.099401.51650HepG2G3BP1
BRAT1ENSG00000106009.11348.78510197.011500.824004.786402.93950HepG2HNRNPA0
BRAT1ENSG00000106009.11385.11130249.462200.626405.314404.36070HepG2HNRNPF
BRAT1ENSG00000106009.11697.87630375.006100.896005.060204.13630HepG2HNRNPK
BRAT1ENSG00000106009.11430.51810267.716300.685306.762605.75340HepG2HNRNPL
BRAT1ENSG00000106009.11330.74220159.045801.0562010.972409.83170HepG2HNRNPU
BRAT1ENSG00000106009.11388.26380221.975700.806504.489902.91890HepG2KHDRBS1
BRAT1ENSG00000106009.11323.19640213.203400.600102.872101.63540HepG2LIN28B
BRAT1ENSG00000106009.11702.55950399.078500.815803.784803.01780HepG2MAGOH
BRAT1ENSG00000106009.11785.02510401.248100.968104.317703.54650HepG2MATR3
BRAT1ENSG00000106009.11265.23880358.24510-0.433702.499501.34750HepG2NAA15
BRAT1ENSG00000106009.11890.73900410.647701.117008.381607.30860HepG2NCBP2
BRAT1ENSG00000106009.11296.06110183.670000.688703.713102.05820HepG2NIP7
BRAT1ENSG00000106009.11484.13400291.420700.732207.082305.87240HepG2NOL12
BRAT1ENSG00000106009.11200.98580114.637000.809903.090901.55730HepG2NOLC1
BRAT1ENSG00000106009.11519.17890226.752301.195006.081804.42060HepG2NONO
BRAT1ENSG00000106009.11224.23540157.415200.510302.458701.65620HepG2PARN
BRAT1ENSG00000106009.11661.02740398.960400.728405.351804.55250HepG2PCBP1
BRAT1ENSG00000106009.11359.88850141.854301.3430016.6602014.94580HepG2PPIL4
BRAT1ENSG00000106009.11551.81950406.018400.442602.523901.99720HepG2PTBP1
BRAT1ENSG00000106009.11383.26980278.182600.462202.506901.93590HepG2PUF60
BRAT1ENSG00000106009.11608.31180295.298501.0425018.8613017.59200HepG2PUM1
BRAT1ENSG00000106009.11583.35830295.085700.9831012.2328010.88110HepG2PUM2
BRAT1ENSG00000106009.11531.05580244.975001.1161010.214108.28620HepG2RBM27
BRAT1ENSG00000106009.11373.50620198.931700.908805.366903.88310HepG2RCC2
BRAT1ENSG00000106009.11450.22380225.910300.994807.870306.56460HepG2RPS2
BRAT1ENSG00000106009.11372.39870233.905200.670803.482202.58360HepG2RPS3A
BRAT1ENSG00000106009.11461.68780230.628601.001208.122406.28620HepG2RPS5
BRAT1ENSG00000106009.11303.59820141.631201.099905.338304.49600HepG2SAFB2
BRAT1ENSG00000106009.11390.26060220.257000.825205.224103.42360HepG2SART3
BRAT1ENSG00000106009.11770.67930498.518900.628404.152703.31730HepG2SF3A3
BRAT1ENSG00000106009.11646.75040422.607700.613803.273302.63640HepG2SF3B4
BRAT1ENSG00000106009.11437.67850266.724200.714407.299606.24410HepG2SLBP
BRAT1ENSG00000106009.11296.77860165.155600.845507.274106.30760HepG2SMN1
BRAT1ENSG00000106009.11234.29270441.15580-0.913003.288802.78430HepG2SRSF1
BRAT1ENSG00000106009.11502.39910274.659200.8711010.538709.42220HepG2SRSF5
BRAT1ENSG00000106009.11324.87730203.540200.674503.646502.36680HepG2STIP1
BRAT1ENSG00000106009.11636.01900312.368001.0257017.5446016.19630HepG2SUCLG1
BRAT1ENSG00000106009.11212.97860396.65250-0.897203.004002.42350HepG2TAF15
BRAT1ENSG00000106009.11375.62200155.926701.2683016.6758015.44660HepG2TRIM56
BRAT1ENSG00000106009.11563.70490271.765101.052506.597905.16260HepG2TUFM
BRAT1ENSG00000106009.11561.94840287.654100.966007.704006.28220HepG2UBE2L3
BRAT1ENSG00000106009.11349.80640144.997201.270409.622908.21090HepG2UCHL5
BRAT1ENSG00000106009.11437.23330209.520601.061207.390205.60820HepG2XPO5
BRAT1ENSG00000106009.11478.91440241.698500.986503.926803.07110HepG2XRN2
BRAT1ENSG00000106009.11232.51080325.25390-0.484303.075802.37570HepG2ZC3H8
BRAT1ENSG00000106009.11359.22300486.23640-0.436803.766803.15460HepG2ZNF622
BRAT1ENSG00000106009.111457.90280764.012400.9321024.7405023.15400K562AGGF1
BRAT1ENSG00000106009.111258.27460839.550600.583705.846004.28990K562AKAP8
BRAT1ENSG00000106009.111355.75810794.993600.770003.186902.48510K562AKAP8L
BRAT1ENSG00000106009.11936.654301210.07660-0.369502.516201.95080K562AQR
BRAT1ENSG00000106009.111097.69640834.147300.396004.335003.16390K562ATP5C1
BRAT1ENSG00000106009.11723.78130439.592800.719302.882801.53570K562BCCIP
BRAT1ENSG00000106009.11768.99140424.912600.855705.864804.45070K562BCLAF1
BRAT1ENSG00000106009.11973.05520735.456700.403804.038202.68920K562CPEB4
BRAT1ENSG00000106009.11676.35300322.359801.069002.608001.58490K562CSTF2
BRAT1ENSG00000106009.11572.84960309.330200.888903.678402.61360K562EFTUD2
BRAT1ENSG00000106009.11968.05400743.338700.381003.826803.00190K562EIF2S2
BRAT1ENSG00000106009.11293.22260199.764100.553603.108002.26670K562EIF3G
BRAT1ENSG00000106009.11807.03150594.954300.439704.605103.04770K562EIF4B
BRAT1ENSG00000106009.11583.85620439.303300.410302.670301.83670K562FIP1L1
BRAT1ENSG00000106009.11228.42140403.96320-0.822502.747901.62730K562FKBP4
BRAT1ENSG00000106009.1125.97240121.80960-2.2296011.100609.49620K562G3BP2
BRAT1ENSG00000106009.111268.78070990.524900.357102.391701.68700K562GRSF1
BRAT1ENSG00000106009.11612.52710295.377701.052105.382003.75250K562IGF2BP2
BRAT1ENSG00000106009.11445.30380300.389200.567904.184502.64970K562IGF2BP3
BRAT1ENSG00000106009.11122.99880191.12730-0.635902.146101.33550K562KRR1
BRAT1ENSG00000106009.11615.68190310.306900.9884012.5571010.67330K562MAGOH
BRAT1ENSG00000106009.111028.06420807.613900.348102.883101.77980K562MAK16
BRAT1ENSG00000106009.11470.60830309.658600.603703.559602.49930K562MATR3
BRAT1ENSG00000106009.111285.55340945.128500.443704.636003.39680K562MBNL1
BRAT1ENSG00000106009.11571.13640305.316700.903404.062002.42410K562NONO
BRAT1ENSG00000106009.11704.58950457.753200.622103.503701.82910K562NUSAP1
BRAT1ENSG00000106009.11415.85490303.382400.454802.904701.52260K562PCBP1
BRAT1ENSG00000106009.11723.09010498.747200.535802.576601.78940K562PPIG
BRAT1ENSG00000106009.11561.96500301.019300.900503.822802.94170K562PRPF8
BRAT1ENSG00000106009.11604.12240416.672000.535804.172003.02840K562PSIP1
BRAT1ENSG00000106009.11560.83130301.491800.8953010.782609.53360K562PTBP1
BRAT1ENSG00000106009.111242.62130788.386700.656307.293306.45870K562PUS1
BRAT1ENSG00000106009.111240.52730768.187900.6913011.4672010.27570K562RBM15
BRAT1ENSG00000106009.11521.16920289.027200.850408.517206.92380K562RBM22
BRAT1ENSG00000106009.11314.74110556.55130-0.822304.862902.70520K562RPS3A
BRAT1ENSG00000106009.11718.10740937.26740-0.384303.880902.92380K562SF3A3
BRAT1ENSG00000106009.11268.57880126.691201.083909.197007.58870K562SF3B4
BRAT1ENSG00000106009.11109.06900183.43420-0.750003.380401.59930K562SND1
BRAT1ENSG00000106009.11530.50220360.555400.557003.836702.56900K562SRFBP1
BRAT1ENSG00000106009.11535.98890295.576400.858608.898007.63940K562SRSF1
BRAT1ENSG00000106009.11403.21670252.433000.675604.469403.07940K562SRSF4
BRAT1ENSG00000106009.11576.79100279.183901.0467012.4374010.05650K562SRSF5
BRAT1ENSG00000106009.11129.18290206.05940-0.673603.271401.85830K562SSB
BRAT1ENSG00000106009.11691.59420299.112701.209109.463508.03520K562TARDBP
BRAT1ENSG00000106009.11713.78880288.535801.3066022.1085019.64600K562TIA1
BRAT1ENSG00000106009.11561.48340283.210200.987308.883706.60190K562TRA2A
BRAT1ENSG00000106009.11589.32030425.969100.468203.160102.13530K562TRIM56
BRAT1ENSG00000106009.11588.81000314.166000.906202.744501.54520K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BRAT1 is not available on ENCORE database.





11 RBPs can affect the splicing of BRAT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBRAT1ENSG00000106009.11chr7-2584542258469025828372583596258695725871120.418000.000430.02744includedK562EFTUD2
SEBRAT1ENSG00000106009.11chr7-2588699258875825869572587112259393825940810.133000.001180.02203includedK562HNRNPC
A3SSBRAT1ENSG00000106009.11chr7-2579177257932425791772579276257941925806860.056000.000190.00157longerK562AQR
A3SSBRAT1ENSG00000106009.11chr7-2581351258150725813512581470258175325818450.113000.000030.00029longerK562AQR
RIBRAT1ENSG00000106009.11chr7-2581753258359625817532581845258283725835960.129000.000450.00363includedK562PUS1
RIBRAT1ENSG00000106009.11chr7-257941925806862579419257952225806122580686-0.195000.000130.00532excludedK562HNRNPC
RIBRAT1ENSG00000106009.11chr7-258283725835962582837258295725832232583596-0.229000.002250.04588excludedK562SRSF1
RIBRAT1ENSG00000106009.11chr7-257941925806862579419257952225806122580686-0.413000.000180.00640excludedK562SRSF1
RIBRAT1ENSG00000106009.11chr7-2579419258068625794192579522258061225806860.283000.002270.02626includedHepG2QKI
RIBRAT1ENSG00000106009.11chr7-2581753258359625817532581845258283725835960.279000.000340.00504includedHepG2TAF15
RIBRAT1ENSG00000106009.11chr7-2579419258068625794192579522258061225806860.167000.001360.01505includedHepG2U2AF1
RIBRAT1ENSG00000106009.11chr7-2577514257898525775142578398257881225789850.464000.000850.01825includedHepG2FUBP3
RIBRAT1ENSG00000106009.11chr7-257941925806862579419257952225806122580686-0.145000.000160.02186excludedK562SAFB
RIBRAT1ENSG00000106009.11chr7-2579419258068625794192579522258061225806860.336000.000190.00144includedK562AQR
RIBRAT1ENSG00000106009.11chr7-258283725835962582837258295725832232583596-0.205000.007060.09251excludedK562PTBP1
RIBRAT1ENSG00000106009.11chr7-257941925806862579419257952225806122580686-0.378000.001460.02910excludedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BRAT1 is not avaliable on ENCORE database.