BBS4

General Information

Gene Name       : BBS4
Gene ID             : ENSG00000140463.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BBS4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BBS4ENSG00000140463.1314.346.9410.64ENCSR000AEF
HepG2BBS4ENSG00000140463.138.8411.7610.30ENCSR985KAT
K562BBS4ENSG00000140463.1328.0233.6630.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BBS4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BBS4 RNA is bound by 15 proteins.  







eCLIP assay for BBS4 is not avaliable on ENCORE database.





15 proteins are bound to BBS4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr157301507473015201+3'-UTR,CDS,intron-Proximal4.244456.53298K562SF3B4
chr157303005273030079+3'-UTR4.199433.87930K562UPF1
chr157300458473004623+3'-UTR,CDS,intron-Proximal3.953163.16051HepG2PPIG
chr157302910273029175+3'-UTR,CDS,intron-Proximal3.629213.02060K562LIN28B
chr157303044473030561+3'-UTR3.4618213.94854K562UPF1
chr157302364473023697+3'-UTR,CDS,intron-Proximal3.117143.25772K562ZNF622
chr157302817573028273+3'-UTR,CDS3.296394.56058HepG2BCLAF1
chr157300919073009262+3'-UTR,CDS,intron-Proximal3.916114.98250K562AQR
chr157301510273015158+3'-UTR,CDS,intron-Proximal4.603314.65563K562AQR
chr157302751673027571+3'-UTR,CDS,intron-Proximal5.681377.81430K562AQR
chr157302996073030021+3'-UTR3.578933.42164K562UPF1
chr157302032273020396+3'-UTR,CDS,intron-Distal,intron-Proximal4.223463.85435K562PRPF8
chr157300209173002121+3'-UTR,5'-UTR,CDS,intron-Proximal3.255563.36945K562ZNF622
chr157300458473004622+3'-UTR,CDS,intron-Proximal3.872203.28461K562BUD13
chr157302811073028179+3'-UTR,CDS,intron-Proximal5.8587910.48996K562AQR
chr157301511973015173+3'-UTR,CDS,intron-Proximal3.669674.77019K562BUD13
chr157302817973028242+3'-UTR,CDS3.374886.21987K562AQR
chr157303064473030705+3'-UTR4.252896.81876K562UPF1
chr157298046672980632+intron-Distal4.425405.41654K562KHSRP
chr157301843973018514+intron-Distal4.5179911.35643K562ILF3
chr157301837873018400+intron-Distal4.050083.08243K562ILF3
chr157301740673017491+intron-Distal3.054053.25653K562CSTF2T
chr157301772973017840+intron-Distal3.945796.11440K562ILF3
chr157301533073015392+intron-Distal4.062553.02234K562KHSRP
chr157298541272985516+intron-Distal3.860353.02234K562KHSRP
chr157298825172988352+intron-Distal3.148103.46531K562KHSRP
chr157301013573010191+intron-Distal4.317083.91475K562PTBP1
chr157300922573009358+intron-Distal,intron-Proximal3.721104.72639K562KHSRP
chr157299355272993747+intron-Distal3.016593.76473K562KHSRP
chr157301842973018501+intron-Distal5.101118.82480HepG2PTBP1
chr157301842973018511+intron-Distal5.7014210.98212K562PTBP1
chr157301878273018854+intron-Distal3.308134.02206K562CSTF2T
chr157300922673009342+intron-Distal,intron-Proximal4.185877.05160K562PRPF8
chr157302812073028166+intron-Proximal3.573893.19080K562U2AF2
chr157302753773027599+intron-Proximal3.385113.80983K562TIA1
chr157302811373028163+intron-Proximal4.371863.35169HepG2U2AF2
chr157302753173027586+intron-Proximal3.275873.75245K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BBS4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BBS4 is not available on ENCORE database.

  • 61 RBPs can affect the levels of BBS4.  








The Knockdown/knockout RNA-Seq assay for BBS4 is not available on ENCORE database.





61 RBPs can affect the gene expression of BBS4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BBS4ENSG00000140463.9342.27980252.162800.440702.188701.65090HepG2BOP1
BBS4ENSG00000140463.9295.64760383.59610-0.375702.271401.67920HepG2CELF1
BBS4ENSG00000140463.9367.33580250.640200.551403.258002.52500HepG2DDX21
BBS4ENSG00000140463.9339.44680245.455500.467602.480901.61930HepG2DDX24
BBS4ENSG00000140463.9168.75200262.89340-0.639602.172401.31030HepG2DDX59
BBS4ENSG00000140463.9357.43640236.439700.596104.190503.39130HepG2DKC1
BBS4ENSG00000140463.9235.12330340.70060-0.535102.558501.98860HepG2EIF2S1
BBS4ENSG00000140463.9194.68470366.58610-0.913005.116804.20010HepG2EIF4B
BBS4ENSG00000140463.9389.06860503.46690-0.371902.610202.02330HepG2ETF1
BBS4ENSG00000140463.9238.74430352.39990-0.561702.869002.19190HepG2G3BP1
BBS4ENSG00000140463.9373.33440271.238200.460802.251201.61920HepG2HNRNPC
BBS4ENSG00000140463.9344.37580250.473500.459202.145201.58410HepG2HNRNPLL
BBS4ENSG00000140463.9315.43220187.700900.748804.569103.38040HepG2HNRNPM
BBS4ENSG00000140463.9418.91850262.737600.672903.315001.85170HepG2ILF3
BBS4ENSG00000140463.9266.89870390.44230-0.548804.080303.36990HepG2PCBP1
BBS4ENSG00000140463.9339.91420414.46220-0.286101.840901.33590HepG2PUM1
BBS4ENSG00000140463.9417.82150251.720200.731007.384506.45890HepG2PUS1
BBS4ENSG00000140463.9569.33710430.256500.404002.852602.22030HepG2QKI
BBS4ENSG00000140463.9583.81580327.437700.834208.112007.03890HepG2RPLP0
BBS4ENSG00000140463.999.23230195.14970-0.975704.079303.14660HepG2RRP9
BBS4ENSG00000140463.9415.81270275.867100.591902.578501.82530HepG2SNRNP70
BBS4ENSG00000140463.9639.45300475.279900.428003.889703.32570HepG2SRFBP1
BBS4ENSG00000140463.9532.79780431.739000.303301.867801.45740HepG2SRSF1
BBS4ENSG00000140463.9269.10330351.25350-0.384402.204201.70020HepG2SRSF9
BBS4ENSG00000140463.9612.33370412.651300.569306.280305.56520HepG2SSB
BBS4ENSG00000140463.9577.93280261.823501.1422016.2868015.25630HepG2TIAL1
BBS4ENSG00000140463.9191.55650264.15620-0.463602.620102.06760HepG2TRIM56
BBS4ENSG00000140463.9138.91720232.74690-0.744503.865203.12750HepG2U2AF1
BBS4ENSG00000140463.9239.89400403.72130-0.751004.231603.18390HepG2UBE2L3
BBS4ENSG00000140463.9395.13990233.100100.761304.289503.02530HepG2UPF2
BBS4ENSG00000140463.9933.411401454.41390-0.639907.677106.78050K562AQR
BBS4ENSG00000140463.91593.736801345.623500.244002.157701.35820K562ATP5C1
BBS4ENSG00000140463.9606.85900834.94370-0.460304.909603.07210K562BCCIP
BBS4ENSG00000140463.9306.21620437.62080-0.515103.175402.03040K562CCAR1
BBS4ENSG00000140463.9542.53840707.46150-0.382903.576202.04880K562DDX27
BBS4ENSG00000140463.9877.351601198.91830-0.450506.263905.33950K562DDX47
BBS4ENSG00000140463.9414.91930640.67050-0.626804.918103.68540K562EFTUD2
BBS4ENSG00000140463.9460.41140685.97380-0.575203.733102.51340K562EIF3D
BBS4ENSG00000140463.9595.45090818.10810-0.458304.463003.46310K562EIF3G
BBS4ENSG00000140463.9622.39640833.83010-0.421904.066403.35400K562FXR1
BBS4ENSG00000140463.9647.04870811.10910-0.326002.129601.42950K562GPKOW
BBS4ENSG00000140463.9848.492501130.80070-0.414403.628602.76700K562GRSF1
BBS4ENSG00000140463.9795.273101162.85320-0.548103.373501.99380K562HNRNPK
BBS4ENSG00000140463.9867.05010632.059300.456003.006302.03120K562HNRNPM
BBS4ENSG00000140463.9751.562401081.06900-0.524506.652005.25900K562HNRNPU
BBS4ENSG00000140463.9996.746301221.09210-0.292902.306501.47050K562MATR3
BBS4ENSG00000140463.9614.62200791.74150-0.365302.651501.79810K562METAP2
BBS4ENSG00000140463.9642.21840898.56950-0.484606.281905.10530K562MTPAP
BBS4ENSG00000140463.9575.684901088.69810-0.9193012.4098010.26640K562PCBP2
BBS4ENSG00000140463.9415.36930623.44590-0.585904.206003.28160K562PRPF8
BBS4ENSG00000140463.91415.601201785.66940-0.335102.731701.92090K562PUF60
BBS4ENSG00000140463.9756.858501140.03770-0.591006.433805.08140K562RBM22
BBS4ENSG00000140463.9841.567301111.14270-0.400902.957901.50920K562RBM34
BBS4ENSG00000140463.9759.29940985.13390-0.375703.698902.76380K562SF3A3
BBS4ENSG00000140463.9698.89050971.42160-0.475004.948803.79100K562SF3B4
BBS4ENSG00000140463.9860.812601165.26040-0.436904.277803.40420K562SRSF1
BBS4ENSG00000140463.9766.123601179.42160-0.622406.578805.44620K562TARDBP
BBS4ENSG00000140463.9877.519401137.65850-0.374603.327402.41840K562TIA1
BBS4ENSG00000140463.9871.047401116.13960-0.357702.643601.57900K562TRA2A
BBS4ENSG00000140463.9653.86150935.19970-0.516305.554004.41870K562U2AF2
BBS4ENSG00000140463.91352.141601058.661800.352904.384903.50080K562UPF1
BBS4ENSG00000140463.9917.896001236.63220-0.430003.076201.80170K562UTP3
BBS4ENSG00000140463.9790.94720941.95740-0.252102.364401.57770K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BBS4 is not available on ENCORE database.





7 RBPs can affect the splicing of BBS4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBBS4ENSG00000140463.9chr15+730202917302033573016868730169967302195673022025-0.086000.000720.01310excludedK562PUS1
SEBBS4ENSG00000140463.9chr15+730151347301518873009118730091917301686873016996-0.146000.001300.04618excludedK562TARDBP
SEBBS4ENSG00000140463.9chr15+730202807302033573016868730169967302364573023798-0.063000.000690.02078excludedK562AGGF1
A3SSBBS4ENSG00000140463.9chr15+7301512973015188730151347301518873009118730091910.096000.009350.04992longerK562AQR
MXEBBS4ENSG00000140463.9chr15+73016868730169967302195673022025730091187300919173023645730237980.211000.000180.010511includedK562HNRNPU
MXEBBS4ENSG00000140463.9chr15+73016868730169967302195673022025730091187300919173023645730237980.190000.006900.083331includedK562SF3B4
MXEBBS4ENSG00000140463.9chr15+73016868730169967302195673022025730091187300919173023645730237980.308000.001190.046571includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BBS4 is not avaliable on ENCORE database.