ATG13

General Information

Gene Name       : ATG13
Gene ID             : ENSG00000175224.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ATG13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ATG13ENSG00000175224.1627.0623.0025.03ENCSR000AEF
HepG2ATG13ENSG00000175224.1662.4239.1250.77ENCSR985KAT
K562ATG13ENSG00000175224.1627.5224.5226.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ATG13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ATG13 RNA is bound by 17 proteins.  







eCLIP assay for ATG13 is not avaliable on ENCORE database.





17 proteins are bound to ATG13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr114669392446694015+3'-UTR4.5209011.02801HepG2UPF1
chr114669586546695918+3'-UTR,intron-Proximal5.9433013.23699K562UPF1
chr114669391446693952+3'-UTR3.337594.01163K562RBM15
chr114669518546695206+3'-UTR,intron-Distal4.463628.27548K562UPF1
chr114669414846694295+3'-UTR4.0300015.84143HepG2UPF1
chr114669479646694908+3'-UTR,intron-Distal,intron-Proximal4.5567329.89096K562UPF1
chr114669471846694786+3'-UTR4.8731225.12543K562UPF1
chr114669512246695162+3'-UTR,intron-Distal5.7028912.42760K562UPF1
chr114669427946694322+3'-UTR5.8594713.76890K562UPF1
chr114669473746694792+3'-UTR4.877436.81418HepG2UPF1
chr114669416746694267+3'-UTR4.0709111.20412K562RBM15
chr114669446246694558+3'-UTR3.284573.45995K562IGF2BP2
chr114669389246693962+3'-UTR3.380093.37207K562FAM120A
chr114666688846666919+3'-UTR,CDS,intron-Proximal4.278206.81876K562UPF1
chr114669389946694023+3'-UTR5.125185.26336K562DDX6
chr114669438746694502+3'-UTR5.382857.76785HepG2AKAP1
chr114669438546694463+3'-UTR3.319544.26712HepG2PTBP1
chr114669402946694079+3'-UTR4.575975.58306HepG2AKAP1
chr114669416146694257+3'-UTR4.2578820.81548K562UPF1
chr114669402646694085+3'-UTR4.8128318.26619K562UPF1
chr114669416146694255+3'-UTR3.168656.23201HepG2AKAP1
chr114669438946694491+3'-UTR5.2661637.49669K562UPF1
chr114669402646694072+3'-UTR3.921244.81659HepG2UPF1
chr114669586846695963+3'-UTR,intron-Proximal4.401544.20997HepG2UPF1
chr114669449146694551+3'-UTR4.3768516.30024K562UPF1
chr114666749346667541+3'-UTR,CDS,intron-Proximal3.201413.09884K562LIN28B
chr114669396946694018+3'-UTR3.390104.17280HepG2AKAP1
chr114663945446639470+5'-UTR,intron-Proximal4.234174.73785K562TIA1
chr114663916546639262+5'-UTR3.563405.82148K562DDX3X
chr114663915646639208+5'-UTR3.719684.38588HepG2DDX3X
chr114663932046639404+5'-UTR4.675238.20930HepG2DDX3X
chr114663920846639254+5'-UTR3.634713.76880HepG2DDX3X
chr114669006346690117+CDS,intron-Distal4.013063.01428K562UCHL5
chr114667912946679232+CDS,intron-Proximal4.241446.79646HepG2PRPF8
chr114668635446686446+CDS,intron-Distal,intron-Proximal5.564799.95676K562PTBP1
chr114667865246678685+CDS3.394515.65632K562UPF1
chr114668636446686452+CDS,intron-Distal,intron-Proximal3.433523.00914HepG2PTBP1
chr114667859246678702+CDS,intron-Proximal3.180818.79250K562SF3B4
chr114666715046667211+intron-Distal4.253854.31512K562KHSRP
chr114667841046678513+intron-Distal3.4439310.37817HepG2HNRNPL
chr114665821546658272+intron-Distal4.501774.58544K562ILF3
chr114667853546678618+intron-Distal,intron-Proximal3.914485.99369K562HNRNPL
chr114667841546678557+intron-Distal,intron-Proximal3.204558.58593K562AGGF1
chr114667836946678535+intron-Distal3.534039.63261K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ATG13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ATG13 is not available on ENCORE database.

  • 56 RBPs can affect the levels of ATG13.  








The Knockdown/knockout RNA-Seq assay for ATG13 is not available on ENCORE database.





56 RBPs can affect the gene expression of ATG13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ATG13ENSG00000175224.121652.069302147.85640-0.378602.790601.84490HepG2ABCF1
ATG13ENSG00000175224.122008.809701662.079000.273303.415502.57500HepG2AKAP8L
ATG13ENSG00000175224.122815.489401907.718800.561406.062804.92190HepG2ASCC1
ATG13ENSG00000175224.12922.781701328.05320-0.525304.680403.53660HepG2BCLAF1
ATG13ENSG00000175224.122079.694201395.626700.575407.279706.36320HepG2BOP1
ATG13ENSG00000175224.122400.397901812.484000.405203.542502.67510HepG2CIRBP
ATG13ENSG00000175224.121879.708501653.947900.184502.097101.50640HepG2CKAP4
ATG13ENSG00000175224.12991.555801281.25270-0.369802.734002.05140HepG2CPSF6
ATG13ENSG00000175224.121077.888902001.19330-0.8927024.5478023.02900HepG2CELF1
ATG13ENSG00000175224.12828.714801349.01650-0.703009.429308.25690HepG2DDX21
ATG13ENSG00000175224.123053.424502208.562500.467204.305203.53890HepG2DDX3X
ATG13ENSG00000175224.121233.874801542.29720-0.321902.597701.64580HepG2DHX30
ATG13ENSG00000175224.121517.516301162.832600.384002.883101.96320HepG2EIF3D
ATG13ENSG00000175224.121129.819201616.55350-0.516806.348005.08290HepG2EWSR1
ATG13ENSG00000175224.121084.568801476.23420-0.444803.764002.57060HepG2GNB2L1
ATG13ENSG00000175224.121480.482601795.70220-0.278502.091801.47890HepG2HNRNPC
ATG13ENSG00000175224.121188.415001910.79690-0.685109.067807.86000HepG2HNRNPK
ATG13ENSG00000175224.121482.659701783.83090-0.266803.295902.63840HepG2HNRNPU
ATG13ENSG00000175224.122596.166001917.492100.437103.975403.18040HepG2IGF2BP2
ATG13ENSG00000175224.121222.908201648.94900-0.431202.827901.61950HepG2KHDRBS1
ATG13ENSG00000175224.121849.213501216.933900.603603.780902.55770HepG2METAP2
ATG13ENSG00000175224.12986.262801228.99910-0.317402.091001.43660HepG2NSUN2
ATG13ENSG00000175224.121215.605501591.03640-0.388304.978804.01820HepG2PPIL4
ATG13ENSG00000175224.121424.012101897.51000-0.414105.399404.35320HepG2PRPF4
ATG13ENSG00000175224.122370.207402012.553000.235902.904702.34680HepG2PTBP1
ATG13ENSG00000175224.122609.029302160.481900.272102.914702.22710HepG2PUM2
ATG13ENSG00000175224.122131.392601685.014900.338905.716904.88980HepG2PUS1
ATG13ENSG00000175224.123306.486302381.496500.473305.297704.39270HepG2RPLP0
ATG13ENSG00000175224.121791.978701371.883300.385303.358502.58880HepG2SF3B1
ATG13ENSG00000175224.121824.970502095.39560-0.199302.133801.60430HepG2SF3B4
ATG13ENSG00000175224.121665.968201952.98430-0.229302.815302.10760HepG2SLBP
ATG13ENSG00000175224.121569.904601852.57060-0.238903.400202.69940HepG2SMN1
ATG13ENSG00000175224.122082.424801526.465700.448002.453801.71870HepG2SNRNP70
ATG13ENSG00000175224.123407.861802880.324000.242503.696703.14340HepG2SRFBP1
ATG13ENSG00000175224.122639.833701476.190300.838509.570107.61290HepG2SRSF3
ATG13ENSG00000175224.122650.883002171.841100.287503.764402.97090HepG2SRSF7
ATG13ENSG00000175224.121446.244702500.79210-0.7901026.0752024.85900HepG2SSB
ATG13ENSG00000175224.121150.665601496.04060-0.378702.750302.07530HepG2SUPV3L1
ATG13ENSG00000175224.12816.280301733.36410-1.0864027.4258026.15310HepG2TIAL1
ATG13ENSG00000175224.121128.891201568.04830-0.474102.805201.32590HepG2TRA2A
ATG13ENSG00000175224.121194.822901748.81720-0.5496011.4526010.42170HepG2TRIM56
ATG13ENSG00000175224.121386.661201716.79800-0.308104.210503.37750HepG2UPF1
ATG13ENSG00000175224.121959.681401657.496200.241502.924602.31210HepG2UTP3
ATG13ENSG00000175224.121044.877501472.69080-0.495104.747303.80570HepG2XRN2
ATG13ENSG00000175224.121302.100702053.65260-0.657408.666906.53390K562ABCF1
ATG13ENSG00000175224.122979.478602143.549400.475005.341304.57220K562AQR
ATG13ENSG00000175224.121004.474501200.10370-0.256702.502601.59210K562BCLAF1
ATG13ENSG00000175224.122175.903803053.24160-0.488708.038406.40990K562CELF1
ATG13ENSG00000175224.121669.459401384.182500.270203.081701.79270K562EIF2S1
ATG13ENSG00000175224.121646.597101316.540100.322602.653901.85090K562EIF4A3
ATG13ENSG00000175224.121135.04170871.147700.381703.674802.09530K562FUS
ATG13ENSG00000175224.122427.517602001.503300.278302.136201.43380K562HSPD1
ATG13ENSG00000175224.121844.830501314.625600.488706.701404.82140K562NCBP2
ATG13ENSG00000175224.122449.487201617.640200.598502.662201.69430K562PABPN1
ATG13ENSG00000175224.123405.445002719.895000.324203.013702.45080K562PUS1
ATG13ENSG00000175224.123039.715902650.051500.197801.873701.36860K562RBM15
ATG13ENSG00000175224.121412.754001677.99370-0.248202.378101.61680K562SF3A3
ATG13ENSG00000175224.12916.678501182.48580-0.367303.599702.61950K562SF3B4
ATG13ENSG00000175224.121030.413201362.01190-0.402503.996703.15260K562SRSF1
ATG13ENSG00000175224.121251.244501016.430600.299802.786601.50470K562SSB
ATG13ENSG00000175224.121754.225301378.335000.347802.707802.00720K562TARDBP
ATG13ENSG00000175224.121619.461701329.588600.284402.407601.64970K562TIA1
ATG13ENSG00000175224.122334.110101803.024000.372406.697505.63300K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ATG13 is not available on ENCORE database.





16 RBPs can affect the splicing of ATG13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEATG13ENSG00000175224.12chr11+466893224668943746686932466870694669004846690126-0.143000.002430.04255excludedHepG2U2AF1
SEATG13ENSG00000175224.12chr11+4663980946639925466393404663944046651594466516500.297000.001050.08273includedHepG2PRPF8
SEATG13ENSG00000175224.12chr11+466398094663992546639340466394404666582846665910-0.278000.002780.06807excludedK562AKAP8L
SEATG13ENSG00000175224.12chr11+4663980946639925466393404663944046651594466516500.391000.000400.00651includedHepG2U2AF2
SEATG13ENSG00000175224.12chr11+466893224668943746686932466870694669004846690126-0.115000.000000.00005excludedK562AQR
SEATG13ENSG00000175224.12chr11+466515944665165046642591466427074666582846665910-0.115000.011930.09343excludedK562AQR
SEATG13ENSG00000175224.12chr11+466515944665165046639874466399254666582846665910-0.115000.008670.09436excludedK562PUS1
SEATG13ENSG00000175224.12chr11+4668639846686509466809414668103546686932466870690.256000.000000.00000includedHepG2PTBP1
SEATG13ENSG00000175224.12chr11+466515944665165046638825466394404666582846665910-0.145000.000740.09340excludedHepG2HNRNPA1
SEATG13ENSG00000175224.12chr11+466515944665165046638825466394404666582846665910-0.187000.000090.00450excludedHepG2SF3A3
SEATG13ENSG00000175224.12chr11+4665387246654009466515944665165046665828466659100.064000.003770.05775includedK562U2AF2
SEATG13ENSG00000175224.12chr11+466515944665165046638825466394404666582846665910-0.329000.000070.00531excludedK562HNRNPK
SEATG13ENSG00000175224.12chr11+466515944665165046638825466394404666582846665910-0.139000.001440.05691excludedHepG2HNRNPU
SEATG13ENSG00000175224.12chr11+4664259146642707466398094663992546651594466516500.354000.000010.00049includedHepG2HNRNPC
SEATG13ENSG00000175224.12chr11+4665244646652541466515944665165046665828466659100.104000.000000.00034includedHepG2HNRNPC
SEATG13ENSG00000175224.12chr11+4668639846686509466809414668103546686932466870690.228000.000000.00000includedK562PTBP1
SEATG13ENSG00000175224.12chr11+466524464665254146651594466516504666582846665910-0.112000.000030.01108excludedK562NPM1
SEATG13ENSG00000175224.12chr11+4665244646652541466515944665165046665828466659100.104000.000710.01450includedK562HNRNPC
A3SSATG13ENSG00000175224.12chr11+4666685946666969466668884666696946665828466659100.099000.000060.00051longerK562AQR
A5SSATG13ENSG00000175224.12chr11+4667778246677962466777824667782346678644466787410.091000.001970.03324longerK562AQR
RIATG13ENSG00000175224.12chr11+466900484669046046690048466901264669034346690460-0.105000.001030.04910excludedHepG2SFPQ
RIATG13ENSG00000175224.12chr11+466900484669046046690048466901264669034346690460-0.098000.007610.04805excludedHepG2U2AF2
RIATG13ENSG00000175224.12chr11+466900484669046046690048466901264669034346690460-0.098000.001660.07230excludedHepG2HNRNPUL1
RIATG13ENSG00000175224.12chr11+4669004846690460466900484669012646690343466904600.122000.000000.00000includedK562AQR
MXEATG13ENSG00000175224.12chr11+46686932466870694668932246689437466808844668103546690048466901260.145000.000480.004811includedK562AQR
MXEATG13ENSG00000175224.12chr11+4667864446678741466790734667917246677782466778234668094146681035-0.105000.008220.054022includedK562AQR
MXEATG13ENSG00000175224.12chr11+4664260946642707466515944665165046639874466399254666582846665910-0.071000.000450.019712includedHepG2NCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ATG13 is not avaliable on ENCORE database.