ACAD9

General Information

Gene Name       : ACAD9
Gene ID             : ENSG00000177646.18
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ACAD9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ACAD9ENSG00000177646.1822.2127.1024.66ENCSR000AEF
HepG2ACAD9ENSG00000177646.1827.4322.5424.98ENCSR985KAT
K562ACAD9ENSG00000177646.1818.6618.3518.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ACAD9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ACAD9 RNA is bound by 14 proteins.  







eCLIP assay for ACAD9 is not avaliable on ENCORE database.





14 proteins are bound to ACAD9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3128628262128628307+3'-UTR,CDS,intron-Proximal4.874885.69951K562AQR
chr3128614155128614238+3'-UTR,5'-UTR,CDS3.681656.81385HepG2BCLAF1
chr3128628214128628267+3'-UTR,CDS,intron-Proximal4.530808.98365HepG2PPIG
chr3128614167128614256+3'-UTR,5'-UTR,CDS4.970999.24396HepG2GRWD1
chr3128612415128612493+3'-UTR,5'-UTR,CDS4.093116.23296HepG2BCLAF1
chr3128615277128615316+3'-UTR,CDS,intron-Proximal4.6449411.08513HepG2PPIG
chr3128620167128620232+3'-UTR,CDS,intron-Proximal4.5111111.87912HepG2PRPF8
chr3128623321128623389+3'-UTR,CDS,intron-Proximal4.438585.93840HepG2PRPF8
chr3128614193128614259+3'-UTR,5'-UTR,CDS4.1848615.74066HepG2PPIG
chr3128627881128627921+3'-UTR,CDS3.854964.77136HepG2PPIG
chr3128616490128616555+3'-UTR,CDS,intron-Proximal4.294784.42734K562UCHL5
chr3128612431128612500+3'-UTR,5'-UTR,CDS,intron-Proximal3.642424.94718HepG2PPIG
chr3128628262128628313+3'-UTR,CDS,intron-Proximal4.054937.87148HepG2PRPF8
chr3128622974128623090+3'-UTR,CDS,intron-Distal,intron-Proximal3.666843.02234K562KHSRP
chr3128623234128623346+3'-UTR,CDS3.717045.10069HepG2GRWD1
chr3128627043128627090+3'-UTR,CDS3.354964.77136HepG2PPIG
chr3128625070128625136+3'-UTR,CDS,intron-Proximal3.954107.66017HepG2PRPF8
chr3128621436128621466+3'-UTR,CDS3.821645.80295HepG2PPIG
chr3128628219128628261+3'-UTR,CDS4.083534.45558HepG2GRWD1
chr3128629078128629170+intron-Distal,intron-Proximal6.0856911.09551HepG2EFTUD2
chr3128602584128602634+intron-Distal3.053544.18137HepG2SUGP2
chr3128599619128599719+intron-Distal4.9097423.99427HepG2SUGP2
chr3128601264128601344+intron-Distal3.672537.74450HepG2MATR3
chr3128601638128601673+intron-Distal3.281067.80569HepG2SUGP2
chr3128600436128600476+intron-Distal4.8354213.90883HepG2SUGP2
chr3128601283128601358+intron-Distal3.4994315.88499HepG2SUGP2
chr3128601378128601429+intron-Distal3.7796912.60743HepG2SUGP2
chr3128600366128600435+intron-Distal4.622804.90095K562PTBP1
chr3128600865128600923+intron-Distal6.8611432.89154HepG2SUGP2
chr3128600333128600440+intron-Distal5.6504310.04361HepG2MATR3
chr3128611523128611582+intron-Distal3.924803.22972K562TARDBP
chr3128599905128599942+intron-Distal3.9299910.73957HepG2SUGP2
chr3128600358128600435+intron-Distal3.233883.59803HepG2PTBP1
chr3128600671128600683+intron-Distal4.164736.98738HepG2SUGP2
chr3128601500128601554+intron-Distal3.682983.08928HepG2MATR3
chr3128600370128600422+intron-Distal4.002033.47525K562MATR3
chr3128598994128599081+intron-Distal,intron-Proximal3.3342310.38673HepG2SUGP2
chr3128599989128600006+intron-Distal5.321569.84699HepG2SUGP2
chr3128602663128602735+intron-Distal3.263065.82512HepG2SUGP2
chr3128599795128599862+intron-Distal3.7163310.53261HepG2SUGP2
chr3128600623128600680+intron-Distal4.616344.66737HepG2MATR3
chr3128600865128600922+intron-Distal3.885768.00967HepG2MATR3
chr3128600030128600107+intron-Distal5.3643822.55177HepG2SUGP2
chr3128600383128600436+intron-Distal4.1647317.31112HepG2SUGP2
chr3128626561128626610+intron-Distal4.378373.71567HepG2RBFOX2
chr3128601504128601557+intron-Distal5.2367019.95199HepG2SUGP2
chr3128601142128601203+intron-Distal5.0501518.33311HepG2SUGP2
chr3128634397128634476+intron-Proximal3.760623.07287K562TIA1
chr3128634394128634471+intron-Proximal3.357634.53685HepG2TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ACAD9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ACAD9 is not available on ENCORE database.

  • 68 RBPs can affect the levels of ACAD9.  








The Knockdown/knockout RNA-Seq assay for ACAD9 is not available on ENCORE database.





68 RBPs can affect the gene expression of ACAD9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ACAD9ENSG00000177646.13331.05370449.17620-0.440202.229801.52090HepG2ASCC1
ACAD9ENSG00000177646.13465.75340727.17960-0.642708.176107.09850HepG2AUH
ACAD9ENSG00000177646.13379.44300521.55250-0.458903.163802.34410HepG2CALR
ACAD9ENSG00000177646.13223.31190144.837000.624502.009801.36260HepG2CNOT7
ACAD9ENSG00000177646.13512.92630644.03040-0.328402.592001.96780HepG2CELF1
ACAD9ENSG00000177646.13575.85180692.59100-0.266302.304901.62010HepG2DAZAP1
ACAD9ENSG00000177646.13574.03250466.727300.298502.337001.56650HepG2DDX19B
ACAD9ENSG00000177646.13306.74090625.78350-1.028606.479405.01110HepG2DDX59
ACAD9ENSG00000177646.13216.57370446.71640-1.044508.122807.11620HepG2DDX6
ACAD9ENSG00000177646.13245.56170429.43410-0.806405.588904.76270HepG2EIF2S1
ACAD9ENSG00000177646.13449.32360654.47470-0.542604.288703.28970HepG2EIF4G2
ACAD9ENSG00000177646.13627.50190834.90940-0.412004.575603.83740HepG2ETF1
ACAD9ENSG00000177646.13318.80490692.34120-1.1188010.602009.23330HepG2FIP1L1
ACAD9ENSG00000177646.13525.69240641.53470-0.287302.138601.50150HepG2HNRNPF
ACAD9ENSG00000177646.13329.12520449.78440-0.450602.384601.73370HepG2HNRNPK
ACAD9ENSG00000177646.13370.18470630.92780-0.7692011.7561010.45210HepG2HNRNPL
ACAD9ENSG00000177646.13352.20360596.10780-0.759206.402005.48840HepG2HNRNPLL
ACAD9ENSG00000177646.13706.63010458.735700.623208.292907.28440HepG2HNRNPU
ACAD9ENSG00000177646.13657.00020478.998800.455802.533401.90410HepG2MAGOH
ACAD9ENSG00000177646.13326.56020481.67840-0.560703.057202.39740HepG2MATR3
ACAD9ENSG00000177646.1339.02430132.39050-1.762407.831006.28820HepG2PABPC1
ACAD9ENSG00000177646.13504.78380655.55090-0.377002.634602.05060HepG2PUF60
ACAD9ENSG00000177646.13554.09770695.86360-0.328703.367502.72710HepG2PUM1
ACAD9ENSG00000177646.13216.27530391.28540-0.855404.033803.19010HepG2RAVER1
ACAD9ENSG00000177646.13572.16150722.67460-0.336902.563401.73540HepG2RBM15
ACAD9ENSG00000177646.13484.88750697.82770-0.525205.144004.49170HepG2RBM22
ACAD9ENSG00000177646.13333.98540461.84600-0.467602.904702.21630HepG2RBM25
ACAD9ENSG00000177646.13735.71690522.932900.492405.014104.32160HepG2NELFE
ACAD9ENSG00000177646.13528.08790691.11920-0.388202.647401.97620HepG2RPLP0
ACAD9ENSG00000177646.13280.07230145.467400.945005.226704.12440HepG2RPS3A
ACAD9ENSG00000177646.13228.75410328.25270-0.521002.527301.77240HepG2RRP9
ACAD9ENSG00000177646.13605.91030476.397400.346803.052502.38130HepG2SMN1
ACAD9ENSG00000177646.13405.44210788.16700-0.9590017.5118016.53730HepG2SRFBP1
ACAD9ENSG00000177646.13849.24850510.620300.7338011.4222010.60310HepG2SRSF1
ACAD9ENSG00000177646.13378.75870634.91430-0.745304.992103.61000HepG2SRSF3
ACAD9ENSG00000177646.13478.41620630.29340-0.397803.391402.63150HepG2SRSF7
ACAD9ENSG00000177646.13316.67440415.42860-0.391602.595002.05680HepG2SRSF9
ACAD9ENSG00000177646.13847.34480684.309100.308202.807602.29240HepG2SSB
ACAD9ENSG00000177646.1372.80270126.55060-0.797702.817001.70480HepG2STIP1
ACAD9ENSG00000177646.13878.48650736.103100.255001.908701.37420HepG2SUCLG1
ACAD9ENSG00000177646.13277.95030459.00330-0.723706.523505.72590HepG2TAF15
ACAD9ENSG00000177646.13412.34210581.12730-0.495002.477701.78570HepG2TARDBP
ACAD9ENSG00000177646.13548.41580445.722600.299001.812901.39050HepG2TIAL1
ACAD9ENSG00000177646.13437.49040592.36360-0.437202.403801.81470HepG2U2AF1
ACAD9ENSG00000177646.13489.32800600.23890-0.294702.187201.55400HepG2UPF1
ACAD9ENSG00000177646.13596.45860421.687300.500102.525401.83050HepG2XRN2
ACAD9ENSG00000177646.13436.19060626.89590-0.523302.406101.79650K562AKAP8L
ACAD9ENSG00000177646.13442.51530879.23640-0.9905012.7393011.61240K562AQR
ACAD9ENSG00000177646.131192.62640985.183800.275602.779302.12630K562DDX47
ACAD9ENSG00000177646.13384.88120283.930200.438802.806702.00480K562EIF3G
ACAD9ENSG00000177646.13476.89450701.21910-0.556204.644103.52520K562FIP1L1
ACAD9ENSG00000177646.13355.37480503.28170-0.502002.944001.77460K562FKBP4
ACAD9ENSG00000177646.13344.05950467.99430-0.443802.538301.71900K562FMR1
ACAD9ENSG00000177646.13476.32220367.892500.372602.389501.81970K562FXR1
ACAD9ENSG00000177646.13115.59280239.21650-1.049305.866504.75130K562G3BP2
ACAD9ENSG00000177646.13394.82410579.61140-0.553904.254203.53060K562HNRNPC
ACAD9ENSG00000177646.13696.59770890.30000-0.354002.706601.66510K562HNRNPL
ACAD9ENSG00000177646.131014.62780726.408000.482005.733204.43560K562HNRNPU
ACAD9ENSG00000177646.13202.64150374.97620-0.887905.278703.93530K562KRR1
ACAD9ENSG00000177646.13255.14210398.91540-0.644803.285702.27010K562MATR3
ACAD9ENSG00000177646.13345.58180522.45550-0.596302.573101.72800K562NAA15
ACAD9ENSG00000177646.13774.44350558.169200.472404.151603.16760K562POLR2G
ACAD9ENSG00000177646.13311.70510459.64080-0.560303.474302.63270K562PRPF8
ACAD9ENSG00000177646.13853.688401250.71560-0.551005.709704.54170K562PUF60
ACAD9ENSG00000177646.13423.96710605.78960-0.514902.578902.00330K562RBM15
ACAD9ENSG00000177646.13267.11950417.63810-0.644803.727002.58940K562SF3B1
ACAD9ENSG00000177646.13273.35780596.35440-1.125403.758702.24290K562SNRNP200
ACAD9ENSG00000177646.13707.93830843.29840-0.252402.161001.32460K562SRPK2
ACAD9ENSG00000177646.13329.22110444.86970-0.434302.228001.32190K562SUPV3L1
ACAD9ENSG00000177646.13725.02140559.862500.372902.812501.98580K562SYNCRIP
ACAD9ENSG00000177646.13130.55490231.78130-0.828104.180102.77780K562U2AF1
ACAD9ENSG00000177646.13121.17550239.41140-0.982406.905105.64520K562U2AF2
ACAD9ENSG00000177646.13349.82340470.92080-0.428902.403501.46130K562UCHL5
ACAD9ENSG00000177646.13936.64900787.044800.251002.244101.47460K562WDR43
ACAD9ENSG00000177646.13780.94930990.55830-0.343002.581501.75400K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ACAD9 is not available on ENCORE database.





8 RBPs can affect the splicing of ACAD9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEACAD9ENSG00000177646.13chr3+128603495128603589128598453128598684128612397128612499-0.189000.006250.08277excludedK562HNRNPC
A5SSACAD9ENSG00000177646.13chr3+1286213951286214751286213951286214711286229041286229750.209000.001290.02318longerK562AQR
A5SSACAD9ENSG00000177646.13chr3+1285984711285988601285984711285986841286034951286035890.537000.000000.00001longerHepG2HNRNPK
A5SSACAD9ENSG00000177646.13chr3+1285984711285988601285984711285986841286034951286035890.414000.000010.00212longerHepG2MATR3
RIACAD9ENSG00000177646.13chr3+1286281861286289921286281861286282641286288631286289920.481000.001840.01509includedHepG2U2AF2
RIACAD9ENSG00000177646.13chr3+1286281861286289921286281861286282641286288631286289920.141000.005320.09179includedHepG2SRSF1
RIACAD9ENSG00000177646.13chr3+1286281861286289921286281861286282641286288631286289920.284000.000010.00013includedHepG2U2AF1
RIACAD9ENSG00000177646.13chr3+1286281861286289921286281861286282641286288631286289920.165000.007030.05831includedHepG2RBM22
RIACAD9ENSG00000177646.13chr3+1286281861286289921286281861286282641286288631286289920.424000.000040.00033includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ACAD9 is not avaliable on ENCORE database.