ABC7-42389800N19.1

General Information

Gene Name       : ABC7-42389800N19.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ABC7-42389800N19.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ABC7-42389800N19.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ABC7-42389800N19.1 RNA is bound by 18 proteins.  







eCLIP assay for ABC7-42389800N19.1 is not avaliable on ENCORE database.





18 proteins are bound to ABC7-42389800N19.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr128812588173+intron-Distal,intron-Proximal3.001933.32230HepG2GTF2F1
chr128316983292+intron-Distal4.7876421.16497K562PTBP1
chr128811288175+intron-Distal,intron-Proximal3.076085.62991HepG2SF3B4
chr128065380704+intron-Distal3.991193.57432K562NONO
chr128812088179+intron-Distal,intron-Proximal5.3071621.47867HepG2EFTUD2
chr128065480706+intron-Distal3.893093.59342K562CSTF2T
chr128357983648+intron-Distal3.279383.25653K562CSTF2T
chr128812388172+intron-Distal,intron-Proximal3.047538.29327HepG2PPIG
chr128315583275+intron-Distal3.9783411.57234K562PCBP1
chr128304483092+intron-Distal3.704833.06084HepG2HNRNPK
chr127983879919+intron-Distal3.491293.99385K562CSTF2T
chr128812088179+intron-Distal,intron-Proximal3.436788.80883HepG2PRPF4
chr128317583287+intron-Distal5.1549646.08428HepG2PCBP2
chr128286582920+intron-Distal4.341345.08471HepG2HNRNPK
chr128318583247+intron-Distal4.278584.12666HepG2HNRNPK
chr128344983531+intron-Distal3.981246.56195HepG2NKRF
chr128177681840+intron-Distal3.407034.13948HepG2PRPF4
chr127976379912+intron-Distal4.042064.34791K562FUS
chr128317683287+intron-Distal3.7318720.61466HepG2PTBP1
chr128656286683+intron-Distal3.979973.15719K562SMNDC1
chr129079590817+intron-Proximal3.499727.16988HepG2PPIG
chr128820188256+intron-Proximal4.032377.96821HepG2SF3B4
chr128985089869+intron-Proximal4.331156.99120K562AQR
chr128804888093+intron-Proximal3.801713.26022HepG2PRPF4
chr128982589870+intron-Proximal3.794587.26133HepG2PRPF8
chr128899289044+intron-Proximal3.082685.56806HepG2PRPF8
chr129062090657+intron-Proximal3.9204310.46300HepG2PPIG
chr129061890656+intron-Proximal3.401709.16706HepG2PABPN1
chr128787887941+intron-Proximal3.219516.92683HepG2PPIG
chr128982589850+intron-Proximal3.888897.30031K562AQR
chr128754687597+intron-Proximal3.962483.44423K562BUD13
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ABC7-42389800N19.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ABC7-42389800N19.1 is not available on ENCORE database.

  • 77 RBPs can affect the levels of ABC7-42389800N19.1.  








The Knockdown/knockout RNA-Seq assay for ABC7-42389800N19.1 is not available on ENCORE database.





77 RBPs can affect the gene expression of ABC7-42389800N19.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ABC7-42389800N19.1ENSG00000226210.3507.95720270.770500.907505.299503.99160HepG2BCCIP
ABC7-42389800N19.1ENSG00000226210.3640.07830534.979700.258701.930901.36180HepG2CKAP4
ABC7-42389800N19.1ENSG00000226210.3712.90850469.022700.604001.821101.30960HepG2DDX6
ABC7-42389800N19.1ENSG00000226210.3390.93010267.070500.549604.062403.22300HepG2DNAJC21
ABC7-42389800N19.1ENSG00000226210.3382.75760264.739500.531804.451803.65950HepG2DNAJC2
ABC7-42389800N19.1ENSG00000226210.3853.21970450.496100.921303.598502.92620HepG2EIF2S1
ABC7-42389800N19.1ENSG00000226210.31008.92850716.431100.493805.863505.04260HepG2ETF1
ABC7-42389800N19.1ENSG00000226210.3478.28100269.629400.826807.101406.13900HepG2HNRNPA1
ABC7-42389800N19.1ENSG00000226210.3587.29180431.747100.443803.359202.57480HepG2HNRNPF
ABC7-42389800N19.1ENSG00000226210.3797.35740472.582100.754602.676301.98830HepG2HNRNPK
ABC7-42389800N19.1ENSG00000226210.3799.99080437.345100.871104.327103.49760HepG2HNRNPL
ABC7-42389800N19.1ENSG00000226210.3411.09080297.938400.464303.408102.74200HepG2HNRNPU
ABC7-42389800N19.1ENSG00000226210.3560.03490841.78950-0.587904.113702.60200HepG2HSPD1
ABC7-42389800N19.1ENSG00000226210.3560.56240425.140200.398802.330601.66430HepG2IGF2BP1
ABC7-42389800N19.1ENSG00000226210.3509.00550304.332700.741909.416208.14400HepG2ILF2
ABC7-42389800N19.1ENSG00000226210.3765.29760476.052300.684804.506603.53550HepG2NOL12
ABC7-42389800N19.1ENSG00000226210.3786.15690514.462600.611704.809203.83310HepG2NSUN2
ABC7-42389800N19.1ENSG00000226210.3660.08800442.715800.576202.597101.74410HepG2PABPC1
ABC7-42389800N19.1ENSG00000226210.3513.98740265.735700.9516012.4127010.91980HepG2PPIL4
ABC7-42389800N19.1ENSG00000226210.3861.98260482.021200.838509.130607.94670HepG2PUM2
ABC7-42389800N19.1ENSG00000226210.3659.16190545.099900.274002.072101.52090HepG2PUS1
ABC7-42389800N19.1ENSG00000226210.3473.63910265.322000.8359010.191609.07650HepG2SAFB2
ABC7-42389800N19.1ENSG00000226210.31086.29840671.471700.693905.315304.36300HepG2SF3A3
ABC7-42389800N19.1ENSG00000226210.3667.67090435.668800.615807.715206.63320HepG2SLBP
ABC7-42389800N19.1ENSG00000226210.3385.88450309.401300.318601.947101.39220HepG2SMN1
ABC7-42389800N19.1ENSG00000226210.3220.98610505.54110-1.1939016.7141015.75910HepG2SRSF1
ABC7-42389800N19.1ENSG00000226210.3915.44900617.931300.566903.804202.61060HepG2SRSF3
ABC7-42389800N19.1ENSG00000226210.3329.67750411.28720-0.319101.866501.39720HepG2SRSF9
ABC7-42389800N19.1ENSG00000226210.3312.47070454.40850-0.540303.608602.98380HepG2TAF15
ABC7-42389800N19.1ENSG00000226210.3463.81660289.468800.680004.492403.88720HepG2TIAL1
ABC7-42389800N19.1ENSG00000226210.3540.53730292.093000.8879012.5002011.42650HepG2TRIM56
ABC7-42389800N19.1ENSG00000226210.3618.26220443.909000.477902.931002.02940HepG2TUFM
ABC7-42389800N19.1ENSG00000226210.31829.77620430.007402.089107.253005.57690HepG2U2AF2
ABC7-42389800N19.1ENSG00000226210.3354.30940156.519401.178609.682108.26500HepG2UCHL5
ABC7-42389800N19.1ENSG00000226210.3538.49000242.556401.150507.643205.91970HepG2UPF2
ABC7-42389800N19.1ENSG00000226210.3547.46120260.871201.069308.584907.32360HepG2XRN2
ABC7-42389800N19.1ENSG00000226210.3311.36590400.03390-0.361502.303901.68430HepG2ZC3H8
ABC7-42389800N19.1ENSG00000226210.31113.54140654.929300.7656018.0274016.93380HepG2ZNF622
ABC7-42389800N19.1ENSG00000226210.3622.07870493.026000.335302.422701.88610K562AGGF1
ABC7-42389800N19.1ENSG00000226210.3695.00350513.018500.437902.783402.12780K562AKAP8L
ABC7-42389800N19.1ENSG00000226210.3589.62520428.359200.460902.703102.12030K562AQR
ABC7-42389800N19.1ENSG00000226210.3545.75410306.503200.832204.935403.43110K562CCAR1
ABC7-42389800N19.1ENSG00000226210.3774.75740525.118700.561003.694901.98650K562CKAP4
ABC7-42389800N19.1ENSG00000226210.3774.02460608.005800.348202.985901.72830K562DDX21
ABC7-42389800N19.1ENSG00000226210.3332.54940225.490700.560403.304902.41160K562EIF4A3
ABC7-42389800N19.1ENSG00000226210.3649.88290465.881000.480103.793702.27750K562EXOSC5
ABC7-42389800N19.1ENSG00000226210.3626.73790456.021300.458703.075902.17910K562FIP1L1
ABC7-42389800N19.1ENSG00000226210.315.4488073.37390-2.247807.418706.14620K562G3BP2
ABC7-42389800N19.1ENSG00000226210.3672.42930461.050400.544405.549903.96010K562GLRX3
ABC7-42389800N19.1ENSG00000226210.3825.74060550.545000.584705.427504.32070K562GPKOW
ABC7-42389800N19.1ENSG00000226210.3796.04690567.739400.487503.769702.89190K562GRSF1
ABC7-42389800N19.1ENSG00000226210.3707.94910300.705101.2352018.1360016.69300K562HNRNPC
ABC7-42389800N19.1ENSG00000226210.3403.61260268.640700.587203.153001.93190K562HNRNPF
ABC7-42389800N19.1ENSG00000226210.3751.66430528.918100.506904.500903.11680K562HNRNPL
ABC7-42389800N19.1ENSG00000226210.3251.02210147.440000.767603.499002.29320K562IGF2BP2
ABC7-42389800N19.1ENSG00000226210.3224.86310154.798400.538602.573601.76210K562MAGOH
ABC7-42389800N19.1ENSG00000226210.3681.11790521.162500.386102.773501.69610K562MAK16
ABC7-42389800N19.1ENSG00000226210.3859.82770630.966600.446403.138501.93280K562MSI2
ABC7-42389800N19.1ENSG00000226210.3788.04430484.735500.7010010.508409.03790K562MTPAP
ABC7-42389800N19.1ENSG00000226210.3977.28540538.578700.8595019.4502017.72340K562NSUN2
ABC7-42389800N19.1ENSG00000226210.3486.64020296.243000.716005.364403.11550K562NUSAP1
ABC7-42389800N19.1ENSG00000226210.3598.17970363.748000.717502.833101.82800K562PABPN1
ABC7-42389800N19.1ENSG00000226210.3439.63520293.666600.582003.945902.19940K562PHF6
ABC7-42389800N19.1ENSG00000226210.3507.36400269.644400.911907.114305.54260K562PSIP1
ABC7-42389800N19.1ENSG00000226210.3791.14860508.754900.636906.078705.31200K562PUS1
ABC7-42389800N19.1ENSG00000226210.3725.72180495.720500.549805.735204.90780K562RBM15
ABC7-42389800N19.1ENSG00000226210.3252.27990144.138400.807503.718202.73330K562RBM22
ABC7-42389800N19.1ENSG00000226210.3386.39730246.163900.650404.471903.20710K562RCC2
ABC7-42389800N19.1ENSG00000226210.3592.23280405.075400.547902.556901.51860K562SAFB
ABC7-42389800N19.1ENSG00000226210.3865.02410531.448500.7027010.054708.57090K562SF3A3
ABC7-42389800N19.1ENSG00000226210.3149.5930076.301900.971204.845603.69990K562SF3B4
ABC7-42389800N19.1ENSG00000226210.3658.15850405.500600.698602.592301.34910K562SFPQ
ABC7-42389800N19.1ENSG00000226210.3899.58880507.577100.825503.326101.38950K562SMN1
ABC7-42389800N19.1ENSG00000226210.3754.56040382.042900.981804.666002.94560K562SNRNP200
ABC7-42389800N19.1ENSG00000226210.3448.70110233.341400.943208.377706.32130K562SRFBP1
ABC7-42389800N19.1ENSG00000226210.3681.23000544.481300.323202.682501.75790K562SRPK2
ABC7-42389800N19.1ENSG00000226210.3369.89930201.516700.876102.991701.88680K562SRSF4
ABC7-42389800N19.1ENSG00000226210.3227.63030139.314900.708202.405801.43670K562SRSF5
ABC7-42389800N19.1ENSG00000226210.3388.90860598.38160-0.621603.705202.11300K562SSRP1
ABC7-42389800N19.1ENSG00000226210.3342.88720202.548600.759402.460901.50830K562SUPV3L1
ABC7-42389800N19.1ENSG00000226210.3322.55000149.209001.112103.700002.87780K562TARDBP
ABC7-42389800N19.1ENSG00000226210.3251.20730143.938800.803303.239802.34390K562TIA1
ABC7-42389800N19.1ENSG00000226210.3458.73180259.334800.822703.031202.04810K562TIAL1
ABC7-42389800N19.1ENSG00000226210.3242.35340141.335700.777904.231702.83340K562TRA2A
ABC7-42389800N19.1ENSG00000226210.3486.59050275.675200.819605.155303.76600K562TRIM56
ABC7-42389800N19.1ENSG00000226210.3309.80500214.440800.530702.293801.37460K562UCHL5
ABC7-42389800N19.1ENSG00000226210.3881.41720571.066900.626109.040107.83380K562UPF1
ABC7-42389800N19.1ENSG00000226210.3622.48940482.540800.367302.340101.55750K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ABC7-42389800N19.1 is not available on ENCORE database.





5 RBPs can affect the splicing of ABC7-42389800N19.1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEABC7-42389800N19.1ENSG00000226210.3chr12+882568839287556877038856988767-0.307000.000700.01515excludedHepG2U2AF1
SEABC7-42389800N19.1ENSG00000226210.3chr12+9010390314895948982790586906550.174000.000010.00101includedK562AKAP8L
SEABC7-42389800N19.1ENSG00000226210.3chr12+9010390314895948982790586906550.094000.007320.08290includedK562PUS1
A3SSABC7-42389800N19.1ENSG00000226210.3chr12+8883689018888598901888569887710.094000.000010.00158longerHepG2SF3A3
A3SSABC7-42389800N19.1ENSG00000226210.3chr12+895948982789674898278885989018-0.190000.005240.09895shorterHepG2U2AF2
MXEABC7-42389800N19.1ENSG00000226210.3chr12+8788088097882568839287556877038856988771-0.180000.002940.048712includedHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ABC7-42389800N19.1 is not avaliable on ENCORE database.