ZNHIT3

General Information

Gene Name       : ZNHIT3
Gene ID             : ENSG00000273611.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNHIT3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNHIT3ENSG00000273611.428.3032.9930.65ENCSR000AEF
HepG2ZNHIT3ENSG00000273611.441.8656.4549.16ENCSR985KAT
K562ZNHIT3ENSG00000273611.452.3951.3451.87ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNHIT3Ribo-STAMP-293TshRNAZNHIT3-BGRSLV02-45,ZNHIT3-BGRSLV02-46NT-BGRSLV02-1,NT-BGRSLV02-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNHIT3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNHIT3 RNA is bound by 8 proteins.  







eCLIP assay for ZNHIT3 is not avaliable on ENCORE database.





8 proteins are bound to ZNHIT3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173485157434851633+3'-UTR,intron-Distal4.740314.56848K562PUM2
chr173485146734851550+3'-UTR,intron-Distal5.352185.74792HepG2SUB1
chr173485122634851311+3'-UTR,CDS,intron-Distal4.020123.66349K562LIN28B
chr173484255934842630+5'-UTR,CDS,intron-Proximal3.388529.01971K562YBX3
chr173484274634842817+CDS,intron-Distal,intron-Proximal3.922564.57180HepG2AQR
chr173484264034842800+CDS,intron-Distal,intron-Proximal5.2183510.82157HepG2PRPF4
chr173484268734842772+intron-Distal,intron-Proximal4.776724.40745K562SF3B4
chr173484268134842772+intron-Distal,intron-Proximal4.683225.86025HepG2SF3B4
chr173484269334842774+intron-Distal,intron-Proximal5.738119.35430HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNHIT3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNHIT3 is not available on ENCORE database.

  • 73 RBPs can affect the levels of ZNHIT3.  








The Knockdown/knockout RNA-Seq assay for ZNHIT3 is not available on ENCORE database.





73 RBPs can affect the gene expression of ZNHIT3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNHIT3ENSG00000108278.7745.75070927.20670-0.314202.689202.05390HepG2CELF1
ZNHIT3ENSG00000108278.7834.77910996.91440-0.256102.379401.68460HepG2DAZAP1
ZNHIT3ENSG00000108278.7441.21590555.30910-0.331802.771901.93780HepG2DDX19B
ZNHIT3ENSG00000108278.7550.30490884.28580-0.684303.265702.60060HepG2DDX6
ZNHIT3ENSG00000108278.7418.79450558.95080-0.416503.886603.14050HepG2DNAJC2
ZNHIT3ENSG00000108278.7509.26390850.37480-0.739703.405802.75200HepG2EIF2S1
ZNHIT3ENSG00000108278.7649.49100939.90410-0.533202.130701.56720HepG2EIF4A3
ZNHIT3ENSG00000108278.7249.13220914.86140-1.8766012.0335010.64960HepG2EIF4B
ZNHIT3ENSG00000108278.7734.79300983.56940-0.420704.539803.50990HepG2EIF4G1
ZNHIT3ENSG00000108278.7447.93910879.53930-0.973405.014404.13110HepG2G3BP1
ZNHIT3ENSG00000108278.7629.98150894.11180-0.505102.006301.42210HepG2IGF2BP2
ZNHIT3ENSG00000108278.7452.32010899.17540-0.991305.279803.85310HepG2KHSRP
ZNHIT3ENSG00000108278.7439.23600548.86600-0.321502.501901.53060HepG2KIF1C
ZNHIT3ENSG00000108278.7665.65310953.60530-0.518601.999901.45890HepG2MATR3
ZNHIT3ENSG00000108278.7643.52180976.12410-0.601102.508101.90390HepG2NCBP2
ZNHIT3ENSG00000108278.7600.97250988.54150-0.7180010.477109.02720HepG2NOL12
ZNHIT3ENSG00000108278.7475.28510869.55950-0.871504.031803.17050HepG2PABPC4
ZNHIT3ENSG00000108278.7528.03760947.69690-0.8438016.3189015.04580HepG2PCBP1
ZNHIT3ENSG00000108278.7396.13340561.07710-0.502204.470003.55310HepG2PPIL4
ZNHIT3ENSG00000108278.7584.15330964.29320-0.723109.684408.78300HepG2PTBP1
ZNHIT3ENSG00000108278.7756.439501001.76280-0.405205.536704.75810HepG2PUM1
ZNHIT3ENSG00000108278.7729.169301001.01890-0.457104.487503.64390HepG2PUM2
ZNHIT3ENSG00000108278.7596.520701044.40410-0.8080013.1455011.93000HepG2QKI
ZNHIT3ENSG00000108278.7581.80660947.84470-0.704108.822407.66830HepG2RBM25
ZNHIT3ENSG00000108278.7614.077301073.18560-0.8054015.0519013.97970HepG2NELFE
ZNHIT3ENSG00000108278.7748.99940999.49060-0.416204.852604.06620HepG2RECQL
ZNHIT3ENSG00000108278.7273.50880447.62520-0.710702.495301.90900HepG2RPS19
ZNHIT3ENSG00000108278.7490.82590692.80290-0.497203.172502.31480HepG2RPS2
ZNHIT3ENSG00000108278.71003.53220597.259700.748603.683202.90200HepG2SF3A3
ZNHIT3ENSG00000108278.7612.139201003.99640-0.7138012.1006011.00170HepG2SF3B4
ZNHIT3ENSG00000108278.7739.80090904.86890-0.290601.938801.33310HepG2SLBP
ZNHIT3ENSG00000108278.7719.79340946.10150-0.394404.099503.52440HepG2SRFBP1
ZNHIT3ENSG00000108278.7606.25750931.75630-0.620009.115008.06730HepG2SRSF5
ZNHIT3ENSG00000108278.7517.04810852.53790-0.7215012.3227011.30460HepG2SRSF9
ZNHIT3ENSG00000108278.7957.20420821.465900.220501.865401.42290HepG2SSB
ZNHIT3ENSG00000108278.7891.591801059.64350-0.249102.228201.65910HepG2SUCLG1
ZNHIT3ENSG00000108278.7778.98590941.87870-0.273902.234001.72140HepG2TAF15
ZNHIT3ENSG00000108278.7582.35110865.50950-0.571706.248304.99760HepG2TIA1
ZNHIT3ENSG00000108278.7353.48240611.22280-0.790109.166208.34880HepG2TIAL1
ZNHIT3ENSG00000108278.7373.63010616.72390-0.723009.943008.97470HepG2TRIM56
ZNHIT3ENSG00000108278.7665.90210921.95380-0.469404.156903.05940HepG2TUFM
ZNHIT3ENSG00000108278.7573.93290975.89470-0.765806.759305.42220HepG2UBE2L3
ZNHIT3ENSG00000108278.7352.65090529.67860-0.586906.016905.05180HepG2UPF1
ZNHIT3ENSG00000108278.7708.95570531.270600.416102.255601.35600HepG2UPF2
ZNHIT3ENSG00000108278.7667.59150511.383000.384503.218002.58070HepG2UTP3
ZNHIT3ENSG00000108278.7199.90830372.22680-0.896809.236908.12910HepG2ZC3H8
ZNHIT3ENSG00000108278.7444.48650582.54430-0.390203.579502.97900HepG2ZNF622
ZNHIT3ENSG00000108278.71126.28670773.371700.542208.100807.20000K562AGGF1
ZNHIT3ENSG00000108278.71048.86140804.726300.382203.037102.35190K562AKAP8L
ZNHIT3ENSG00000108278.71831.404701336.400600.454504.667603.94090K562AQR
ZNHIT3ENSG00000108278.7774.08300932.23720-0.268202.202401.34440K562BCLAF1
ZNHIT3ENSG00000108278.7170.81740331.56560-0.956805.995604.28620K562CCAR1
ZNHIT3ENSG00000108278.71191.13600906.535500.393805.049004.20490K562DDX47
ZNHIT3ENSG00000108278.7250.51980371.15200-0.567103.418701.92280K562DHX30
ZNHIT3ENSG00000108278.71092.53380865.955800.335203.313402.34520K562DKC1
ZNHIT3ENSG00000108278.7879.687501069.51080-0.281902.502801.81280K562EIF2S2
ZNHIT3ENSG00000108278.7397.89230609.44750-0.615105.607403.87740K562EIF4B
ZNHIT3ENSG00000108278.7401.77870538.96250-0.423802.853701.56660K562EXOSC5
ZNHIT3ENSG00000108278.7398.85130620.44250-0.637404.739303.19700K562FKBP4
ZNHIT3ENSG00000108278.71842.576701425.208200.370503.547502.69490K562GRSF1
ZNHIT3ENSG00000108278.7536.57400715.09970-0.414402.537301.96250K562HNRNPC
ZNHIT3ENSG00000108278.7485.93340638.47280-0.393902.468901.40180K562HNRNPF
ZNHIT3ENSG00000108278.7856.27720510.257500.746806.461404.94900K562HNRNPM
ZNHIT3ENSG00000108278.71085.96450840.926600.368802.744901.95310K562HSPD1
ZNHIT3ENSG00000108278.7984.67700670.591000.554103.608702.56840K562NAA15
ZNHIT3ENSG00000108278.7743.77490882.33640-0.246502.221601.54560K562NSUN2
ZNHIT3ENSG00000108278.7807.39580469.242800.782803.390202.26100K562PABPN1
ZNHIT3ENSG00000108278.7926.75210704.237900.396002.902002.05970K562PPIG
ZNHIT3ENSG00000108278.7340.09820543.47190-0.676303.687901.57190K562PPIL4
ZNHIT3ENSG00000108278.7950.31720631.499100.589505.546804.48410K562PRPF8
ZNHIT3ENSG00000108278.71408.80320798.082200.8198010.885209.85660K562PUS1
ZNHIT3ENSG00000108278.71034.85360777.598900.412204.227803.51110K562RBM15
ZNHIT3ENSG00000108278.7430.45340584.79820-0.442103.040401.99650K562RCC2
ZNHIT3ENSG00000108278.7706.87290429.032900.720302.393501.30820K562SF1
ZNHIT3ENSG00000108278.7327.33550449.89410-0.458802.608801.59300K562SRSF4
ZNHIT3ENSG00000108278.7448.23590598.55240-0.417203.275201.62100K562SRSF9
ZNHIT3ENSG00000108278.7684.90490839.25450-0.293202.003401.31410K562TIA1
ZNHIT3ENSG00000108278.7338.32820616.67860-0.866107.826506.18280K562TIAL1
ZNHIT3ENSG00000108278.7466.91920654.97350-0.488303.471902.39090K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNHIT3 is not available on ENCORE database.





16 RBPs can affect the splicing of ZNHIT3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNHIT3ENSG00000108278.7chr17+3484277834842810348425713484262934848656348487430.079000.003380.05553includedK562SRSF1
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842538348426293484865634848743-0.229000.000000.00000excludedK562SF3B4
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.516000.000000.00000excludedHepG2U2AF1
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.608000.000000.00000excludedHepG2U2AF2
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.272000.000000.00000excludedHepG2UCHL5
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.446000.000000.00000excludedK562U2AF1
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.171000.000000.00001excludedHepG2PCBP2
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.141000.000290.07155excludedK562PPIL4
SEZNHIT3ENSG00000108278.7chr17+3484277834842810348425713484262934848656348487430.111000.000000.00002includedHepG2SRSF1
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.181000.000000.00014excludedHepG2TIAL1
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.122000.000100.06978excludedK562LARP7
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.108000.000060.01073excludedHepG2SUPV3L1
SEZNHIT3ENSG00000108278.7chr17+3484277834842810348425713484262934848656348487430.083000.000290.07222includedHepG2NOL12
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.206000.000000.00000excludedHepG2SF3B4
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.482000.000000.00000excludedK562U2AF2
SEZNHIT3ENSG00000108278.7chr17+3484277834842810348425713484262934848656348487430.083000.001610.05398includedK562HNRNPU
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.110000.000170.07952excludedHepG2SMNDC1
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.131000.000070.06143excludedHepG2YBX3
SEZNHIT3ENSG00000108278.7chr17+3484277834842810348425713484262934848656348487430.099000.000030.00230includedHepG2HNRNPU
SEZNHIT3ENSG00000108278.7chr17+348427783484281034842571348426293484865634848743-0.092000.003160.04857excludedK562HNRNPC
A3SSZNHIT3ENSG00000108278.7chr17+3484970334849850348498033484985034848656348487430.470000.015190.07556longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNHIT3 is not avaliable on ENCORE database.