ZNF138

General Information

Gene Name       : ZNF138
Gene ID             : ENSG00000197008.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF138)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF138ENSG00000197008.914.5310.1712.35ENCSR000AEF
HepG2ZNF138ENSG00000197008.93.387.425.40ENCSR985KAT
K562ZNF138ENSG00000197008.919.3323.5021.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF138 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF138 RNA is bound by 9 proteins.  







eCLIP assay for ZNF138 is not avaliable on ENCORE database.





9 proteins are bound to ZNF138 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr76429181264291881+3'-UTR,CDS,intron-Proximal3.579373.95921HepG2U2AF2
chr76429341964293465+3'-UTR4.331783.32022K562UCHL5
chr76429182164291886+3'-UTR,CDS,intron-Proximal3.989774.52374K562U2AF2
chr76429177664291866+3'-UTR,CDS,intron-Proximal4.5474717.57728K562SF3B4
chr76429364864293741+3'-UTR5.8348710.72549K562QKI
chr76425480664254899+5'-UTR4.958047.93248K562RBM15
chr76428839464288467+intron-Distal6.2348422.38325K562KHSRP
chr76426193664261999+intron-Distal4.7815812.22629K562EXOSC5
chr76426064364260713+intron-Distal4.241943.29197K562HNRNPM
chr76427644164276498+intron-Distal4.680015.85485K562KHSRP
chr76426065864260740+intron-Distal6.1284514.98606K562EXOSC5
chr76426103264261084+intron-Distal4.8410312.54773K562EXOSC5
chr76426098464261009+intron-Distal3.227774.74410K562EXOSC5
chr76429057564290626+intron-Distal3.597745.14864K562KHSRP
chr76427638264276441+intron-Distal3.973637.46973K562KHSRP
chr76428830464288385+intron-Distal4.121829.20471K562KHSRP
chr76429021064290259+intron-Distal5.5924712.29181K562KHSRP
chr76426079464260818+intron-Distal5.160738.04096K562EXOSC5
chr76426155864261602+intron-Distal3.9848912.31050K562EXOSC5
chr76427649864276557+intron-Distal3.731484.72639K562KHSRP
chr76426033764260387+intron-Distal5.4052418.09185K562EXOSC5
chr76426127464261307+intron-Distal4.460467.91405K562EXOSC5
chr76428939764289451+intron-Distal3.538096.18396K562KHSRP
chr76428029864280350+intron-Distal4.083894.18168HepG2ILF3
chr76426056264260600+intron-Distal3.880838.47592K562EXOSC5
chr76426176864261819+intron-Distal3.783296.13002K562EXOSC5
chr76426149764261517+intron-Distal3.653415.20902K562EXOSC5
chr76426145064261466+intron-Distal4.431025.12361K562EXOSC5
chr76426087364260910+intron-Distal5.351058.69493K562EXOSC5
chr76429014964290186+intron-Distal3.7178811.54160K562KHSRP
chr76427935564279430+intron-Distal4.042234.14103K562KHSRP
chr76428948964289565+intron-Distal4.0447411.44618K562KHSRP
chr76429018664290209+intron-Distal4.344949.85516K562KHSRP
chr76428477864284909+intron-Distal3.114923.96958K562KHSRP
chr76429164164291759+intron-Distal,intron-Proximal4.191558.55611K562KHSRP
chr76426042064260450+intron-Distal3.611315.85269K562EXOSC5
chr76428997564290000+intron-Distal3.851463.45805K562KHSRP
chr76429025964290309+intron-Distal5.173749.61540K562KHSRP
chr76426153164261558+intron-Distal3.709856.96387K562EXOSC5
chr76426208364262134+intron-Distal4.1510411.23512K562EXOSC5
chr76427945364279516+intron-Distal4.361235.41654K562KHSRP
chr76426210864262164+intron-Distal4.457135.57532K562HNRNPM
chr76426188664261919+intron-Distal3.934355.20902K562EXOSC5
chr76425982464259906+intron-Distal3.148103.76473K562KHSRP
chr76429015464290292+intron-Distal4.756007.00602HepG2KHSRP
chr76429001564290082+intron-Distal5.2908012.05461K562KHSRP
chr76426166864261739+intron-Distal3.8454415.79792K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF138 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF138 is not available on ENCORE database.

  • 59 RBPs can affect the levels of ZNF138.  








The Knockdown/knockout RNA-Seq assay for ZNF138 is not available on ENCORE database.





59 RBPs can affect the gene expression of ZNF138 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF138ENSG00000197008.5210.19920118.952900.821302.841002.30200HepG2AKAP1
ZNF138ENSG00000197008.5158.00020249.07440-0.656703.163402.52810HepG2BOP1
ZNF138ENSG00000197008.593.26180158.87540-0.768502.921301.78690HepG2CPSF7
ZNF138ENSG00000197008.5165.20350259.66920-0.652402.309001.41820HepG2DDX59
ZNF138ENSG00000197008.591.37110156.66710-0.777903.498102.71420HepG2DNAJC21
ZNF138ENSG00000197008.580.02770155.26060-0.956105.283204.42700HepG2DNAJC2
ZNF138ENSG00000197008.5117.17390186.90050-0.673602.893402.06220HepG2EIF4G2
ZNF138ENSG00000197008.556.92010120.44490-1.081403.874002.79960HepG2GEMIN5
ZNF138ENSG00000197008.596.56190247.38670-1.357209.077708.01080HepG2HNRNPLL
ZNF138ENSG00000197008.567.24070174.76220-1.378009.729908.64830HepG2HNRNPU
ZNF138ENSG00000197008.593.21990143.57470-0.623102.094601.45850HepG2IGF2BP1
ZNF138ENSG00000197008.5259.46640153.500700.757202.751702.04920HepG2RAVER1
ZNF138ENSG00000197008.5270.34640197.259100.454602.156101.68360HepG2RBM22
ZNF138ENSG00000197008.591.15200150.74840-0.725802.380001.50170HepG2RPS10
ZNF138ENSG00000197008.578.18870131.62630-0.751402.594101.99780HepG2RPS19
ZNF138ENSG00000197008.5211.10900119.984600.815004.081403.53470HepG2SRSF1
ZNF138ENSG00000197008.592.46520143.23630-0.631402.283601.64700HepG2SRSF7
ZNF138ENSG00000197008.579.95380131.54350-0.718302.633801.71450HepG2SUPT6H
ZNF138ENSG00000197008.5208.78870107.826400.953205.590404.84180HepG2TAF15
ZNF138ENSG00000197008.5132.87520241.08450-0.859504.601703.69830HepG2TARDBP
ZNF138ENSG00000197008.576.59670169.84270-1.148806.416905.71400HepG2TIAL1
ZNF138ENSG00000197008.5126.24390171.33030-0.440601.788901.31540HepG2TRIM56
ZNF138ENSG00000197008.5116.13840182.87770-0.655002.777801.90270HepG2TUFM
ZNF138ENSG00000197008.51051.994401395.73470-0.407905.722204.95290K562AGGF1
ZNF138ENSG00000197008.51226.826901533.61860-0.322002.664001.70510K562AKAP8
ZNF138ENSG00000197008.5944.035101452.30480-0.621407.813706.66360K562AKAP8L
ZNF138ENSG00000197008.5912.146301159.98900-0.346802.587302.01560K562AQR
ZNF138ENSG00000197008.51276.263201523.77880-0.255702.424901.57400K562ATP5C1
ZNF138ENSG00000197008.5251.66300350.98360-0.479902.606101.59170K562CCAR1
ZNF138ENSG00000197008.5940.338901364.50430-0.537107.835805.94960K562CPEB4
ZNF138ENSG00000197008.5806.04990993.76470-0.302002.180401.47610K562CPSF6
ZNF138ENSG00000197008.5473.27430618.80420-0.386802.788501.74270K562DDX3X
ZNF138ENSG00000197008.5490.34260741.30520-0.596307.013905.94530K562EIF2S2
ZNF138ENSG00000197008.5401.42150582.14380-0.536305.268803.60160K562EIF4B
ZNF138ENSG00000197008.51173.43170744.445300.656405.131304.10120K562G3BP2
ZNF138ENSG00000197008.5522.52400673.35680-0.365902.382401.33650K562HNRNPF
ZNF138ENSG00000197008.5929.737801275.91510-0.456604.691403.27380K562HNRNPL
ZNF138ENSG00000197008.5627.14280812.72790-0.374003.306702.33170K562HNRNPU
ZNF138ENSG00000197008.5903.675301183.01750-0.388603.011902.18320K562HSPD1
ZNF138ENSG00000197008.5410.22160808.99920-0.9797014.1403011.34890K562IGF2BP3
ZNF138ENSG00000197008.5678.51510835.85110-0.300902.120201.38020K562MAGOH
ZNF138ENSG00000197008.51177.468901475.37400-0.325402.519201.50790K562MAK16
ZNF138ENSG00000197008.5673.01170926.14940-0.460604.105203.02400K562METAP2
ZNF138ENSG00000197008.5788.066401210.26350-0.618904.609203.38000K562NAA15
ZNF138ENSG00000197008.5508.645501043.70480-1.037006.283804.61030K562PABPN1
ZNF138ENSG00000197008.51280.495701642.24220-0.359003.741002.07870K562PNPT1
ZNF138ENSG00000197008.5739.62230990.56270-0.421503.313202.40110K562PPIG
ZNF138ENSG00000197008.5445.71260812.08830-0.8655012.5508011.18860K562PTBP1
ZNF138ENSG00000197008.52267.671601743.767600.378902.200301.47370K562PUF60
ZNF138ENSG00000197008.51495.480601817.30090-0.281203.117202.10080K562PUM2
ZNF138ENSG00000197008.5898.055001440.43390-0.681608.791207.87190K562PUS1
ZNF138ENSG00000197008.51162.570701403.36480-0.271602.493001.92520K562RBM15
ZNF138ENSG00000197008.5377.86370778.64720-1.0431014.7791012.65540K562RBM22
ZNF138ENSG00000197008.5341.47080512.72350-0.586403.457302.54210K562RPS19
ZNF138ENSG00000197008.5572.63100954.47500-0.737102.783301.57290K562SF1
ZNF138ENSG00000197008.5750.727401163.58250-0.632202.560901.32860K562SFPQ
ZNF138ENSG00000197008.5419.22400584.70620-0.480003.139502.02900K562SRFBP1
ZNF138ENSG00000197008.5485.57700796.12730-0.713308.206006.99810K562SRSF1
ZNF138ENSG00000197008.5587.88360751.90690-0.355002.349101.39490K562SRSF5
ZNF138ENSG00000197008.5550.24580805.71130-0.550204.651603.72670K562TARDBP
ZNF138ENSG00000197008.5579.55410777.20510-0.423403.501402.56400K562TIA1
ZNF138ENSG00000197008.5301.21210650.32490-1.1104012.2942010.21120K562TIAL1
ZNF138ENSG00000197008.5573.55280762.72020-0.411202.904501.78000K562TRA2A
ZNF138ENSG00000197008.5538.32500690.79080-0.359802.230701.39450K562TRIM56
ZNF138ENSG00000197008.51202.55630938.798200.357104.722803.64260K562WDR43
ZNF138ENSG00000197008.51021.110001306.61790-0.355702.868301.98690K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF138 is not available on ENCORE database.





17 RBPs can affect the splicing of ZNF138 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF138ENSG00000197008.5chr7+642759536427603164275295642754226429182864292580-0.393000.005600.08058excludedK562SF3B4
SEZNF138ENSG00000197008.5chr7+6427529564275422642548026425494964291828642940420.296000.003480.09352includedK562PRPF8
SEZNF138ENSG00000197008.5chr7+642752956427542264254802642549496429182864294042-0.196000.001380.04057excludedK562AKAP8L
SEZNF138ENSG00000197008.5chr7+6427529564275422642548026425494964291828642940420.173000.000430.09277includedK562PUM1
SEZNF138ENSG00000197008.5chr7+6428059764280701642548026425494964291828642921810.077000.000260.06758includedK562WDR43
SEZNF138ENSG00000197008.5chr7+642759536427603164275295642754226429182864292580-0.351000.001960.02486excludedHepG2U2AF2
SEZNF138ENSG00000197008.5chr7+6427529564275422642548026425494964291828642940420.309000.000000.00034includedK562FXR1
SEZNF138ENSG00000197008.5chr7+642752956427542264254802642549496429182864294042-0.615000.000450.06975excludedHepG2TIA1
SEZNF138ENSG00000197008.5chr7+642913176429145464254802642549496429182864292181-0.120000.000500.06956excludedK562LARP4
SEZNF138ENSG00000197008.5chr7+6429131764291454642548026425494964291828642921810.561000.000780.07946includedHepG2SSB
SEZNF138ENSG00000197008.5chr7+642752956427542264254802642549496429182864294042-0.214000.000030.00235excludedK562UTP18
SEZNF138ENSG00000197008.5chr7+642759496427603164275295642754226429182864293705-0.421000.001850.03287excludedK562U2AF2
SEZNF138ENSG00000197008.5chr7+6427529564275422642548026425494964291828642940420.476000.000000.00000includedK562TARDBP
SEZNF138ENSG00000197008.5chr7+642759496427603164275295642754226429182864293705-0.277000.001140.03010excludedK562RBM15
SEZNF138ENSG00000197008.5chr7+6429131764291454642759536427603164291828642921810.329000.002660.05813includedK562AGGF1
SEZNF138ENSG00000197008.5chr7+642752956427542264254802642549496429182864294042-0.166000.004050.07925excludedK562AGGF1
SEZNF138ENSG00000197008.5chr7+6427529564275422642548026425494964291828642940420.520000.000000.00000includedK562PTBP1
SEZNF138ENSG00000197008.5chr7+6429131764291454642759536427603164291828642921810.378000.000020.00057includedK562HNRNPC
MXEZNF138ENSG00000197008.5chr7+64280597642807016429131764291454642752956427542264291828642921810.385000.000940.038411includedK562LIN28B

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF138 is not avaliable on ENCORE database.