UBE2F

General Information

Gene Name       : UBE2F
Gene ID             : ENSG00000184182.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: UBE2F)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878UBE2FENSG00000184182.1833.9332.3933.16ENCSR000AEF
HepG2UBE2FENSG00000184182.1865.0798.3981.73ENCSR985KAT
K562UBE2FENSG00000184182.1859.6459.2759.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for UBE2F is not avaliable on ENCORE database.



Proteins bound to RNA
  • UBE2F RNA is bound by 13 proteins.  







eCLIP assay for UBE2F is not avaliable on ENCORE database.





13 proteins are bound to UBE2F RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2238940872238940996+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.5736810.39215K562PRPF8
chr2238950464238950589+3'-UTR,intron-Distal,polyA_site4.231485.02888K562KHSRP
chr2238939228238939294+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal5.567486.69228HepG2PRPF8
chr2238944523238944597+3'-UTR,CDS,intron-Distal,intron-Proximal4.199873.96990K562BUD13
chr2238950197238950275+3'-UTR,intron-Distal3.770073.02234K562KHSRP
chr2238940858238940924+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal6.322177.02967HepG2PRPF8
chr2238944531238944582+3'-UTR,CDS,intron-Distal,intron-Proximal3.603925.73766K562YBX3
chr2238949928238949958+3'-UTR,CDS,intron-Distal,intron-Proximal3.180534.11795K562YBX3
chr2238875730238875776+5'-UTR,CDS,intron-Proximal4.502046.48236HepG2DDX3X
chr2238875673238875725+5'-UTR4.018777.37356K562DDX3X
chr2238903389238903425+5'-UTR,CDS,intron-Distal3.248026.20049K562YBX3
chr2238903425238903451+5'-UTR,CDS,intron-Distal3.734509.25117K562YBX3
chr2238875656238875730+5'-UTR,CDS6.0765311.78230HepG2DDX3X
chr2238875666238875776+5'-UTR,CDS,intron-Proximal4.0995612.08332HepG2NCBP2
chr2238875725238875775+5'-UTR,CDS,intron-Proximal4.4024423.68464K562DDX3X
chr2238881733238881765+5'-UTR,CDS,intron-Distal,intron-Proximal4.2033810.73364K562DDX3X
chr2238892686238892797+intron-Distal3.704833.06084HepG2HNRNPK
chr2238909089238909154+intron-Distal3.696296.59336K562KHSRP
chr2238939261238939328+intron-Distal,intron-Proximal4.895794.65563K562AQR
chr2238880608238880717+intron-Distal4.402215.62460K562CSTF2T
chr2238887326238887394+intron-Distal4.247673.97018HepG2HNRNPM
chr2238909154238909221+intron-Distal3.896563.49011K562KHSRP
chr2238892598238892672+intron-Distal4.595529.64289HepG2PCBP2
chr2238880610238880682+intron-Distal4.648655.61356K562FMR1
chr2238930824238930882+intron-Distal4.062963.43813HepG2HNRNPC
chr2238892672238892787+intron-Distal7.1357136.40944HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for UBE2F is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for UBE2F is not available on ENCORE database.

  • 58 RBPs can affect the levels of UBE2F.  








The Knockdown/knockout RNA-Seq assay for UBE2F is not available on ENCORE database.





58 RBPs can affect the gene expression of UBE2F :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
UBE2FENSG00000184182.14441.54280602.83960-0.449202.187501.35730HepG2BCCIP
UBE2FENSG00000184182.14332.41490452.08840-0.443602.679701.46940HepG2BUD13
UBE2FENSG00000184182.14786.90970621.756900.339701.983001.32100HepG2CIRBP
UBE2FENSG00000184182.14401.20680539.33260-0.426803.791003.03460HepG2CKAP4
UBE2FENSG00000184182.14327.47690477.10920-0.542903.312002.56690HepG2CPSF6
UBE2FENSG00000184182.14376.11560496.91680-0.401802.396401.36970HepG2CPSF7
UBE2FENSG00000184182.14682.57960446.585900.612005.364504.45180HepG2DDX21
UBE2FENSG00000184182.14425.91920540.02150-0.342402.106901.48490HepG2DNAJC21
UBE2FENSG00000184182.14633.53230815.96200-0.365102.539401.75660HepG2EIF4G2
UBE2FENSG00000184182.141164.54390978.196600.251502.275101.72130HepG2ETF1
UBE2FENSG00000184182.14390.32750527.14690-0.433502.868902.01910HepG2EWSR1
UBE2FENSG00000184182.14199.23270477.92500-1.262305.878404.39850HepG2FTO
UBE2FENSG00000184182.14315.61460424.27790-0.426802.238001.52360HepG2FUBP3
UBE2FENSG00000184182.14381.16990647.17570-0.763706.318005.33320HepG2G3BP1
UBE2FENSG00000184182.14586.02990704.88250-0.266401.993901.37830HepG2HNRNPF
UBE2FENSG00000184182.14412.85430655.08780-0.666105.479904.52230HepG2HNRNPK
UBE2FENSG00000184182.14643.73240786.59520-0.289202.864402.18090HepG2HNRNPL
UBE2FENSG00000184182.14373.42480516.13620-0.466902.650802.03250HepG2HNRNPLL
UBE2FENSG00000184182.14379.90410602.38870-0.665105.633004.79390HepG2HNRNPU
UBE2FENSG00000184182.141040.56420789.851700.397602.186401.45530HepG2LARP4
UBE2FENSG00000184182.14380.65670514.46170-0.434602.669101.48260HepG2LIN28B
UBE2FENSG00000184182.14904.90520697.786900.374902.315401.71390HepG2MAGOH
UBE2FENSG00000184182.14359.51110526.38620-0.550102.350301.46330HepG2MTPAP
UBE2FENSG00000184182.14657.43950856.21480-0.381103.588602.72040HepG2NOL12
UBE2FENSG00000184182.14464.61730654.88510-0.495205.286504.49100HepG2PCBP1
UBE2FENSG00000184182.14386.54730537.28820-0.475103.543602.71970HepG2PPIL4
UBE2FENSG00000184182.14384.79820487.95650-0.342702.219101.51880HepG2PRPF4
UBE2FENSG00000184182.14213.42630457.26360-1.099309.565808.16850HepG2PRPF8
UBE2FENSG00000184182.14378.46570817.30020-1.1107017.3473016.02660HepG2PUF60
UBE2FENSG00000184182.14419.47650633.50890-0.594805.804004.61950HepG2RBM15
UBE2FENSG00000184182.14529.71180654.99060-0.306301.935301.36310HepG2RBM25
UBE2FENSG00000184182.14555.47290690.63490-0.314202.514701.92380HepG2RECQL
UBE2FENSG00000184182.14478.60770366.434500.385202.178501.62630HepG2RPS19
UBE2FENSG00000184182.14772.79060518.789300.574803.808503.01250HepG2SF3A3
UBE2FENSG00000184182.14604.82530783.58700-0.373604.085103.25610HepG2SLBP
UBE2FENSG00000184182.141048.78380724.155300.534207.319706.63610HepG2SRSF1
UBE2FENSG00000184182.14428.09130589.11390-0.460604.580003.90280HepG2SRSF9
UBE2FENSG00000184182.14561.50430801.74730-0.513906.442705.72020HepG2SSB
UBE2FENSG00000184182.14473.33090598.09900-0.337502.315101.54840HepG2TIA1
UBE2FENSG00000184182.14460.56900348.564300.401902.153601.48390HepG2UCHL5
UBE2FENSG00000184182.14593.23210460.085800.366603.082202.35410HepG2UPF1
UBE2FENSG00000184182.14715.39820444.196300.687409.365808.37030HepG2UTP3
UBE2FENSG00000184182.14377.95030481.52790-0.349402.414101.78110HepG2ZC3H8
UBE2FENSG00000184182.14812.04670506.007700.6823011.7235010.79010HepG2ZNF622
UBE2FENSG00000184182.141064.229801347.77940-0.340802.476801.91540K562AQR
UBE2FENSG00000184182.14809.29330622.943700.377502.856002.06090K562CPSF6
UBE2FENSG00000184182.141063.15000754.025500.495604.602703.48970K562FIP1L1
UBE2FENSG00000184182.141676.507101275.774200.394003.880402.99080K562GRSF1
UBE2FENSG00000184182.14592.52100796.72350-0.427203.579402.35390K562HNRNPA1
UBE2FENSG00000184182.141075.50400620.243700.794008.410006.64230K562HNRNPM
UBE2FENSG00000184182.141490.266301022.232700.543705.690404.56450K562HSPD1
UBE2FENSG00000184182.14855.12420580.542400.558605.331004.09180K562METAP2
UBE2FENSG00000184182.141295.74560856.035800.597906.579305.21910K562PPIG
UBE2FENSG00000184182.14378.40520573.96590-0.601004.667503.44870K562PSIP1
UBE2FENSG00000184182.141096.184601442.11200-0.395703.748102.80210K562PUF60
UBE2FENSG00000184182.141334.977501076.039200.311002.115701.62810K562PUS1
UBE2FENSG00000184182.14748.15620576.541700.375802.077501.37420K562RPS19
UBE2FENSG00000184182.14362.22590496.50690-0.454902.674701.67260K562SRFBP1
UBE2FENSG00000184182.141002.23160704.344900.508805.303604.33100K562SRSF1
UBE2FENSG00000184182.14565.55230712.83060-0.333901.976501.37080K562TARDBP
UBE2FENSG00000184182.14405.93150552.04740-0.443602.508501.62180K562TIAL1
UBE2FENSG00000184182.14427.03440586.58760-0.458003.011102.01590K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for UBE2F is not available on ENCORE database.





10 RBPs can affect the splicing of UBE2F :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEUBE2FENSG00000184182.14chr2+238925207238925275238903385238903451238933982238934053-0.102000.000410.00968excludedHepG2U2AF1
SEUBE2FENSG00000184182.14chr2+238925207238925275238903385238903451238933982238934053-0.179000.000000.00000excludedK562AQR
SEUBE2FENSG00000184182.14chr2+2389252072389252752389033852389034512389339822389340530.071000.004000.07469includedHepG2SRSF1
SEUBE2FENSG00000184182.14chr2+238925207238925275238903385238903451238933982238934053-0.166000.000000.00000excludedHepG2SF3A3
SEUBE2FENSG00000184182.14chr2+2389252072389252752389033852389034512389339822389340530.112000.000340.03034includedHepG2IGF2BP3
MXEUBE2FENSG00000184182.14chr2+2389339822389340532389391962389392542389252072389252752389408622389408950.222000.000340.090431includedHepG2FAM120A
MXEUBE2FENSG00000184182.14chr2+2388966042388966342389252072389252752388817332388818672389339822389340530.151000.001010.018341includedK562DROSHA
MXEUBE2FENSG00000184182.14chr2+238925207238925275238933982238934053238903385238903451238939196238939254-0.125000.001050.009532includedK562AQR
MXEUBE2FENSG00000184182.14chr2+2388966042388966342389252072389252752388817332388818672389339822389340530.146000.001970.058191includedHepG2SF3A3
MXEUBE2FENSG00000184182.14chr2+2389033852389034512389252072389252752388966042388966342389339822389340530.254000.000020.001591includedHepG2SF3A3
MXEUBE2FENSG00000184182.14chr2+238933982238934053238944518238944581238925207238925275238949928238949961-0.166000.000690.028072includedHepG2SF3A3
MXEUBE2FENSG00000184182.14chr2+238925207238925275238933982238934053238903385238903451238939196238939254-0.133000.003420.083582includedHepG2SF3A3
MXEUBE2FENSG00000184182.14chr2+2389339822389340532389391962389392542389252072389252752389408622389408950.143000.000170.004101includedHepG2SFPQ
MXEUBE2FENSG00000184182.14chr2+2389339822389340532389391962389392542389252072389252752389408622389408950.296000.000000.000001includedHepG2U2AF2
MXEUBE2FENSG00000184182.14chr2+2389252072389252752389339822389340532389033852389034512389391962389392540.319000.000000.000001includedHepG2U2AF2
MXEUBE2FENSG00000184182.14chr2+2389339822389340532389391962389392542389252072389252752389408622389408950.143000.000020.000941includedHepG2HNRNPUL1
MXEUBE2FENSG00000184182.14chr2+2389033852389034512389252072389252752388966042388966342389339822389340530.230000.005090.064011includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for UBE2F is not avaliable on ENCORE database.