TDRP

General Information

Gene Name       : TDRP
Gene ID             : ENSG00000180190.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TDRP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TDRPENSG00000180190.110.000.000.00ENCSR000AEF
HepG2TDRPENSG00000180190.116.6812.669.67ENCSR985KAT
K562TDRPENSG00000180190.110.010.030.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TDRP is not avaliable on ENCORE database.



Proteins bound to RNA
  • TDRP RNA is bound by 18 proteins.  







eCLIP assay for TDRP is not avaliable on ENCORE database.





18 proteins are bound to TDRP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8494850494933-5'-UTR,intron-Distal,intron-Proximal3.553213.41847HepG2GTF2F1
chr8494767494830-5'-UTR,intron-Distal3.357203.90490HepG2SRSF1
chr8494975495088-5'-UTR,intron-Distal,intron-Proximal4.9787814.10104HepG2RBFOX2
chr8494841494923-5'-UTR,intron-Distal,intron-Proximal3.089144.56843HepG2HLTF
chr8494841494936-5'-UTR,intron-Distal,intron-Proximal3.501524.83304HepG2FAM120A
chr8494717494773-5'-UTR,CDS,intron-Distal4.875667.09127HepG2PRPF4
chr8494995495074-5'-UTR,intron-Distal,intron-Proximal6.0128716.01425HepG2FAM120A
chr8494837494938-5'-UTR,intron-Distal,intron-Proximal3.8246810.49216HepG2PRPF4
chr8494844494975-5'-UTR,intron-Distal,intron-Proximal3.551796.80143HepG2RBFOX2
chr8494982495029-5'-UTR,intron-Distal,intron-Proximal3.708515.35897HepG2PRPF4
chr8494842494946-5'-UTR,intron-Distal,intron-Proximal4.3137617.90410HepG2CSTF2T
chr8494672494756-CDS,intron-Distal4.282096.83552HepG2DDX3X
chr8444492444596-CDS,intron-Distal,intron-Proximal3.829106.39499HepG2GRWD1
chr8442663442734-CDS,intron-Distal3.122555.35431HepG2BCLAF1
chr8453425453470-intron-Distal4.5316210.51884HepG2HNRNPM
chr8452616452654-intron-Distal4.987104.97791HepG2RBFOX2
chr8452665452714-intron-Distal3.298303.39818HepG2BCCIP
chr8464406464495-intron-Distal3.265553.84025HepG2SUGP2
chr8457516457654-intron-Distal4.606378.02251HepG2HNRNPM
chr8453512453577-intron-Distal4.441186.66631HepG2HNRNPM
chr8452625452724-intron-Distal6.4923623.66766HepG2HNRNPM
chr8452654452710-intron-Distal4.370078.58854HepG2RBFOX2
chr8452825452881-intron-Distal5.403068.05797HepG2HNRNPM
chr8468000468109-intron-Distal5.319158.59719HepG2HNRNPM
chr8452987453037-intron-Distal5.178578.95887HepG2HNRNPM
chr8453518453557-intron-Distal5.285834.70434HepG2RBFOX2
chr8455806455881-intron-Distal4.564404.64592HepG2HNRNPM
chr8474207474270-intron-Distal3.839983.29248HepG2SUGP2
chr8453571453665-intron-Distal5.3283811.08512HepG2BCCIP
chr8480961481035-intron-Distal3.574924.70379HepG2HLTF
chr8495177495250-intron-Distal3.703125.88643HepG2RBFOX2
chr8453141453221-intron-Distal5.129379.02650HepG2BCCIP
chr8452987453045-intron-Distal4.474157.32957HepG2RBFOX2
chr8494449494565-intron-Distal,intron-Proximal3.9398810.41397HepG2EFTUD2
chr8452457452500-intron-Distal5.021417.87558HepG2HNRNPM
chr8495302495359-intron-Distal3.733657.46919HepG2FAM120A
chr8454006454016-intron-Distal4.228933.86368HepG2HNRNPM
chr8453577453680-intron-Distal5.9358612.57775HepG2HNRNPM
chr8495326495371-intron-Distal4.721605.11005HepG2PRPF4
chr8453860453915-intron-Distal4.430704.92742HepG2BCCIP
chr8452899452978-intron-Distal5.6867910.41051HepG2HNRNPM
chr8453138453183-intron-Distal5.673506.34754HepG2RBFOX2
chr8453726453810-intron-Distal6.1820618.48267HepG2HNRNPM
chr8495127495184-intron-Distal3.975684.35431HepG2PRPF4
chr8453514453568-intron-Distal4.533045.60124HepG2BCCIP
chr8485222485287-intron-Distal4.397455.02084HepG2HNRNPM
chr8453834453908-intron-Distal4.626887.84681HepG2RBFOX2
chr8453568453687-intron-Distal4.156126.62706HepG2RBFOX2
chr8494495494580-intron-Distal,intron-Proximal4.886926.99833HepG2GTF2F1
chr8495196495250-intron-Distal3.881225.56645HepG2CSTF2T
chr8495184495252-intron-Distal5.665678.82769HepG2PRPF4
chr8481475481583-intron-Distal3.746393.69311HepG2CSTF2
chr8473665473724-intron-Distal3.108513.00437HepG2HNRNPK
chr8495196495250-intron-Distal5.1580911.00001HepG2FAM120A
chr8453434453506-intron-Distal4.806187.42170HepG2BCCIP
chr8494550494595-intron-Distal,intron-Proximal3.520755.59141HepG2PRPF4
chr8481350481448-intron-Distal3.480086.59122HepG2HLTF
chr8485303485363-intron-Distal4.643375.94008HepG2HNRNPM
chr8494490494550-intron-Distal5.7032411.34764HepG2PRPF4
chr8453931453967-intron-Distal3.323674.01262HepG2HNRNPM
chr8495194495252-intron-Distal4.174943.30705HepG2GTF2F1
chr8453362453440-intron-Distal4.294818.10553HepG2RBFOX2
chr8495300495336-intron-Distal4.241533.18939HepG2RBFOX2
chr8453471453510-intron-Distal4.217075.78025HepG2RBFOX2
chr8453851453922-intron-Distal4.907675.43487HepG2EXOSC5
chr8453836453891-intron-Distal4.110587.88662HepG2HNRNPM
chr8494480494563-intron-Distal,intron-Proximal5.116318.08715HepG2CSTF2T
chr8495004495066-intron-Distal,intron-Proximal3.528775.08839HepG2CSTF2T
chr8452849452917-intron-Distal4.688973.20480HepG2EXOSC5
chr8453478453696-intron-Distal6.2001513.50295HepG2EXOSC5
chr8495029495085-intron-Distal,intron-Proximal3.945476.27493HepG2PRPF4
chr8484872484959-intron-Distal5.123058.23608HepG2HNRNPM
chr8495004495076-intron-Distal,intron-Proximal4.138174.13073HepG2GTF2F1
chr8494491494550-intron-Distal4.502348.27535HepG2FAM120A
chr8453477453512-intron-Distal4.404469.71076HepG2HNRNPM
chr8495085495127-intron-Distal,intron-Proximal4.780224.61288HepG2PRPF4
chr8489137489229-intron-Distal4.985457.76609HepG2HNRNPL
chr8452829452899-intron-Distal5.1421111.29890HepG2RBFOX2
chr8453749453807-intron-Distal4.017803.98726HepG2RBFOX2
chr8495110495177-intron-Distal3.958015.29525HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TDRP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TDRP is not available on ENCORE database.

  • 50 RBPs can affect the levels of TDRP.  








The Knockdown/knockout RNA-Seq assay for TDRP is not available on ENCORE database.





50 RBPs can affect the gene expression of TDRP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TDRPENSG00000180190.7597.16050419.900700.508003.703002.47110HepG2AATF
TDRPENSG00000180190.7293.33630466.24220-0.668503.706402.62280HepG2ABCF1
TDRPENSG00000180190.7715.00500988.14570-0.466802.888602.34610HepG2AKAP1
TDRPENSG00000180190.7396.74440300.403900.401201.979601.46560HepG2BOP1
TDRPENSG00000180190.7519.13680397.151400.386302.423301.69770HepG2CALR
TDRPENSG00000180190.7605.66520776.78480-0.359002.081801.40470HepG2CIRBP
TDRPENSG00000180190.7469.54190581.25480-0.307902.177401.57630HepG2CKAP4
TDRPENSG00000180190.7484.80850314.949000.622204.181102.48320HepG2DDX28
TDRPENSG00000180190.7538.96910313.174800.783103.891802.74240HepG2DDX59
TDRPENSG00000180190.7355.57500556.18790-0.645406.733405.76530HepG2DKC1
TDRPENSG00000180190.7243.52010444.22230-0.867206.386305.03920HepG2EEF2
TDRPENSG00000180190.7695.01340426.552900.704205.162503.64960HepG2AGO1
TDRPENSG00000180190.7513.55050781.67790-0.606104.672603.91360HepG2EIF2S1
TDRPENSG00000180190.7498.92570863.85080-0.792007.079406.05680HepG2EIF4A3
TDRPENSG00000180190.71004.94730793.186900.341303.240102.34880HepG2EIF4G1
TDRPENSG00000180190.71350.531101110.474000.282303.160502.52490HepG2ETF1
TDRPENSG00000180190.7370.44930568.10860-0.616905.372904.21000HepG2EWSR1
TDRPENSG00000180190.7197.87080321.09060-0.698404.086902.98530HepG2GEMIN5
TDRPENSG00000180190.7754.79610555.034400.443404.944503.67750HepG2HDGF
TDRPENSG00000180190.7232.13690406.99890-0.810006.006905.10480HepG2HNRNPA1
TDRPENSG00000180190.7530.28500818.68290-0.626505.559704.59610HepG2HNRNPK
TDRPENSG00000180190.7292.15850379.14510-0.376002.284101.62390HepG2IGF2BP1
TDRPENSG00000180190.7477.82800821.84670-0.782407.785806.71200HepG2IGF2BP2
TDRPENSG00000180190.7376.78040871.87890-1.2104016.1491014.62670HepG2MAGOH
TDRPENSG00000180190.7238.00600381.02900-0.678904.594103.57280HepG2MSI2
TDRPENSG00000180190.7615.99850445.150300.468502.478201.67210HepG2PARN
TDRPENSG00000180190.7539.51350777.35990-0.526906.464305.59670HepG2PCBP1
TDRPENSG00000180190.7505.96920401.100100.335002.177001.51530HepG2PPIL4
TDRPENSG00000180190.7402.08390313.308500.359802.181301.48730HepG2PRPF4
TDRPENSG00000180190.7368.88900592.12910-0.682708.689207.69910HepG2PUS1
TDRPENSG00000180190.71322.06300856.700600.625809.111108.07700HepG2QKI
TDRPENSG00000180190.7747.06550578.586100.368602.814401.95140HepG2RBM15
TDRPENSG00000180190.7977.85520777.483300.330702.370001.74070HepG2RBM25
TDRPENSG00000180190.7503.00090880.28940-0.8074013.1015012.08380HepG2NELFE
TDRPENSG00000180190.7280.26140414.86710-0.565903.846403.06190HepG2RPLP0
TDRPENSG00000180190.7265.54520350.89030-0.402101.984801.45580HepG2RPS19
TDRPENSG00000180190.7232.67890352.18960-0.598003.294502.26380HepG2SERBP1
TDRPENSG00000180190.7396.04540295.291900.423402.080801.46270HepG2SF3B1
TDRPENSG00000180190.7568.66840823.55130-0.534306.504705.66050HepG2SF3B4
TDRPENSG00000180190.7627.10320328.565200.932406.296605.10760HepG2SNRNP70
TDRPENSG00000180190.71028.98570699.296000.557108.653507.77320HepG2SRSF9
TDRPENSG00000180190.7661.07090910.22940-0.461405.544204.86690HepG2SSB
TDRPENSG00000180190.7813.24500484.327500.747604.907403.29590HepG2SUB1
TDRPENSG00000180190.7998.26440854.583700.224101.895201.36270HepG2SUCLG1
TDRPENSG00000180190.71112.49130772.558200.526006.646105.84190HepG2TAF15
TDRPENSG00000180190.7308.10890624.59190-1.019505.205103.77960HepG2TBRG4
TDRPENSG00000180190.71153.39200709.949600.7000010.050808.47430HepG2TIA1
TDRPENSG00000180190.7292.04940437.03960-0.581604.101803.51860HepG2TIAL1
TDRPENSG00000180190.7380.19480244.472400.637004.244103.30340HepG2UCHL5
TDRPENSG00000180190.76.2337026.27250-2.075402.114301.58830K562AQR
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TDRP is not available on ENCORE database.






No RBPs affect the alternative splcing events of TDRP on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TDRP is not avaliable on ENCORE database.