TBCCD1

General Information

Gene Name       : TBCCD1
Gene ID             : ENSG00000113838.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBCCD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBCCD1ENSG00000113838.1210.409.7610.08ENCSR000AEF
HepG2TBCCD1ENSG00000113838.127.909.688.79ENCSR985KAT
K562TBCCD1ENSG00000113838.1213.3214.9214.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBCCD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBCCD1 RNA is bound by 2 proteins.  







eCLIP assay for TBCCD1 is not avaliable on ENCORE database.





2 proteins are bound to TBCCD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3186264088186264211-3'-UTR,5'-UTR,intron-Distal,intron-Proximal,polyA_site3.638553.02234K562KHSRP
chr3186271351186271407-intron-Distal4.651574.64001HepG2U2AF2
chr3186271165186271256-intron-Distal3.860353.26999K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBCCD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBCCD1 is not available on ENCORE database.

  • 66 RBPs can affect the levels of TBCCD1.  








The Knockdown/knockout RNA-Seq assay for TBCCD1 is not available on ENCORE database.





66 RBPs can affect the gene expression of TBCCD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBCCD1ENSG00000113838.8365.22390249.305500.550804.212203.49160HepG2ACO1
TBCCD1ENSG00000113838.8620.02960268.270901.2085011.7344010.71230HepG2AKAP1
TBCCD1ENSG00000113838.8414.62240251.104100.723404.571703.24430HepG2AKAP8
TBCCD1ENSG00000113838.8482.83810384.540900.328301.891001.30360HepG2AUH
TBCCD1ENSG00000113838.8313.90260229.004400.454802.113701.58540HepG2BOP1
TBCCD1ENSG00000113838.8277.14010201.064000.462902.212701.51830HepG2CALR
TBCCD1ENSG00000113838.8302.43860210.895900.520002.412101.68490HepG2CIRBP
TBCCD1ENSG00000113838.8388.54170308.579800.332301.903201.35140HepG2CELF1
TBCCD1ENSG00000113838.8363.78460262.584700.470202.210401.51230HepG2DDX55
TBCCD1ENSG00000113838.8497.89120220.715001.1735010.609709.48750HepG2DDX6
TBCCD1ENSG00000113838.8171.17460241.70690-0.497801.944901.35190HepG2HNRNPC
TBCCD1ENSG00000113838.8235.86350307.19280-0.381201.941001.33380HepG2HNRNPF
TBCCD1ENSG00000113838.8315.66040222.174700.506602.363501.71520HepG2HNRNPK
TBCCD1ENSG00000113838.8256.27060388.59790-0.600603.203501.90120HepG2KHDRBS1
TBCCD1ENSG00000113838.8330.45000238.012700.473301.952801.41820HepG2MATR3
TBCCD1ENSG00000113838.8642.73250372.704100.786104.084202.99130HepG2PABPC1
TBCCD1ENSG00000113838.8158.74970237.64750-0.582102.513701.70210HepG2PARN
TBCCD1ENSG00000113838.8317.90980203.264100.645204.559103.81300HepG2PCBP1
TBCCD1ENSG00000113838.8138.62190214.15440-0.627503.253102.45970HepG2PPIL4
TBCCD1ENSG00000113838.8128.78600202.63690-0.653902.239301.50960HepG2PRPF8
TBCCD1ENSG00000113838.8320.08770206.824700.630004.213203.56910HepG2PTBP1
TBCCD1ENSG00000113838.8183.60090314.05920-0.774505.040704.26560HepG2PUF60
TBCCD1ENSG00000113838.8408.18630224.005000.865607.600006.64250HepG2QKI
TBCCD1ENSG00000113838.8475.05810222.050501.097106.565605.50460HepG2RAVER1
TBCCD1ENSG00000113838.8549.07660369.028400.573204.839204.20220HepG2RBM22
TBCCD1ENSG00000113838.8361.84680230.179500.652504.507803.84840HepG2NELFE
TBCCD1ENSG00000113838.8227.10980409.50950-0.850505.399104.27540HepG2RPS3A
TBCCD1ENSG00000113838.8154.78370213.81810-0.466102.092201.51930HepG2SAFB2
TBCCD1ENSG00000113838.8265.55060385.62260-0.538202.680801.38970HepG2SART3
TBCCD1ENSG00000113838.8214.70170388.97880-0.857404.710102.73040HepG2SBDS
TBCCD1ENSG00000113838.8367.41340215.338600.770706.249905.42060HepG2SF3B4
TBCCD1ENSG00000113838.8313.53350224.763800.480102.655202.18930HepG2SRSF1
TBCCD1ENSG00000113838.8387.72010242.225300.678603.507602.36750HepG2SRSF3
TBCCD1ENSG00000113838.8226.90870301.80420-0.411502.185301.55810HepG2SRSF7
TBCCD1ENSG00000113838.8385.09350182.854801.0744012.9367011.90020HepG2SRSF9
TBCCD1ENSG00000113838.8342.36040202.018200.760906.041605.26620HepG2TAF15
TBCCD1ENSG00000113838.8151.62710233.25530-0.621402.927202.41560HepG2TIAL1
TBCCD1ENSG00000113838.8367.01630238.804100.619903.645502.92890HepG2U2AF1
TBCCD1ENSG00000113838.8325.82590150.902201.110402.899801.88640HepG2U2AF2
TBCCD1ENSG00000113838.8485.20920324.782600.579002.982102.11480HepG2UBE2L3
TBCCD1ENSG00000113838.8407.05450226.836300.843508.302707.35500HepG2UTP3
TBCCD1ENSG00000113838.8252.04460366.80250-0.541302.458901.43400HepG2XPO5
TBCCD1ENSG00000113838.8395.98390510.78030-0.367302.660202.10030K562AGGF1
TBCCD1ENSG00000113838.8437.58200561.21250-0.359002.299101.41500K562AKAP8
TBCCD1ENSG00000113838.8354.71870531.47590-0.583304.605003.75470K562AKAP8L
TBCCD1ENSG00000113838.8160.47630237.33590-0.564602.694601.65710K562CCAR1
TBCCD1ENSG00000113838.8289.07460406.83240-0.493002.498901.63370K562EFTUD2
TBCCD1ENSG00000113838.8260.04880391.13250-0.588903.487302.52360K562FMR1
TBCCD1ENSG00000113838.8523.36250330.102200.664806.633705.75420K562FXR1
TBCCD1ENSG00000113838.8572.99240808.15860-0.496102.722701.97150K562GRSF1
TBCCD1ENSG00000113838.8271.48690375.03550-0.466102.439701.87500K562HNRNPC
TBCCD1ENSG00000113838.8716.86290434.565400.722006.043204.60060K562HNRNPM
TBCCD1ENSG00000113838.8441.24790581.51030-0.398202.972502.04710K562HNRNPU
TBCCD1ENSG00000113838.8386.71980564.07860-0.544604.435903.35720K562KIF1C
TBCCD1ENSG00000113838.8415.98680539.92160-0.376202.357101.39180K562MAK16
TBCCD1ENSG00000113838.8456.94480631.90350-0.467703.624902.56210K562MBNL1
TBCCD1ENSG00000113838.8359.16560479.19410-0.416003.082902.23150K562MTPAP
TBCCD1ENSG00000113838.8241.82950336.24600-0.475502.163301.37260K562PSIP1
TBCCD1ENSG00000113838.8350.26400527.18000-0.589903.916003.28570K562PUS1
TBCCD1ENSG00000113838.8318.03170513.57310-0.691406.731205.83270K562RBM15
TBCCD1ENSG00000113838.8212.34480349.02150-0.716905.176803.26930K562RBM25
TBCCD1ENSG00000113838.8262.55440383.43050-0.546302.656401.66130K562SUPV3L1
TBCCD1ENSG00000113838.8534.20820420.828200.344102.135501.41240K562SYNCRIP
TBCCD1ENSG00000113838.8312.55670456.28900-0.545803.518602.71730K562TARDBP
TBCCD1ENSG00000113838.8464.08300603.33610-0.378602.822901.53990K562TROVE2
TBCCD1ENSG00000113838.8293.14840405.75340-0.469002.280701.36500K562UCHL5
TBCCD1ENSG00000113838.8349.25140483.10630-0.468103.241102.29810K562WDR3
TBCCD1ENSG00000113838.8628.48750939.47870-0.580004.884703.68770K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBCCD1 is not available on ENCORE database.





4 RBPs can affect the splicing of TBCCD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBCCD1ENSG00000113838.8chr3-1862713031862713921862689171862690681862720421862722640.259000.000790.02210includedHepG2HNRNPK
SETBCCD1ENSG00000113838.8chr3-1862713031862713921862689171862690681862720421862722640.056000.000010.00592includedK562EIF4G2
SETBCCD1ENSG00000113838.8chr3-1862713031862713921862689171862690681862720421862722640.053000.000540.07425includedK562ZC3H8
A3SSTBCCD1ENSG00000113838.8chr3-1862743781862746231862743781862745641862762051862764230.081000.000000.00004longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBCCD1 is not avaliable on ENCORE database.