SRI

General Information

Gene Name       : SRI
Gene ID             : ENSG00000075142.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SRI)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SRIENSG00000075142.13181.95163.23172.59ENCSR000AEF
HepG2SRIENSG00000075142.130.000.020.01ENCSR985KAT
K562SRIENSG00000075142.1397.24104.72100.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SRI is not avaliable on ENCORE database.



Proteins bound to RNA
  • SRI RNA is bound by 9 proteins.  







eCLIP assay for SRI is not avaliable on ENCORE database.





9 proteins are bound to SRI RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr78783578187835806-3'-UTR,CDS,intron-Distal4.539533.09566K562PABPC4
chr78783869287838739-3'-UTR,CDS,intron-Distal3.8694614.08558K562YBX3
chr78784019687840211-3'-UTR,CDS,intron-Distal,intron-Proximal5.279886.10793K562DDX3X
chr78783940887839445-3'-UTR,CDS,intron-Distal4.836146.51488K562LIN28B
chr78783873987838768-3'-UTR,CDS,intron-Distal,intron-Proximal3.266578.40639K562YBX3
chr78784021187840241-3'-UTR,CDS,intron-Distal,intron-Proximal4.002096.78159K562DDX3X
chr78783935387839408-3'-UTR,CDS,intron-Distal,intron-Proximal3.194943.77649K562LIN28B
chr78783566387835751-3'-UTR,intron-Distal,intron-Proximal4.9249339.61973K562PUM2
chr78783561387835756-3'-UTR,intron-Distal,intron-Proximal5.1340514.29015K562PABPC4
chr78784019587840238-3'-UTR,CDS,intron-Distal,intron-Proximal4.671836.51488K562LIN28B
chr78783865287838692-3'-UTR,CDS,intron-Distal,intron-Proximal3.4011012.13739K562YBX3
chr78783563087835698-3'-UTR,intron-Distal,intron-Proximal4.170278.42501K562TIA1
chr78784929087849381-5'-UTR,CDS,intron-Distal,intron-Proximal3.753327.10584K562GEMIN5
chr78784928887849369-5'-UTR,CDS,intron-Distal,intron-Proximal5.0105835.33788K562DDX3X
chr78784817187848200-CDS,intron-Distal,intron-Proximal3.2949314.69203K562DDX3X
chr78784817287848217-CDS,intron-Distal,intron-Proximal5.2908913.00575K562FTO
chr78784820087848225-CDS,intron-Distal3.5525112.24852K562DDX3X
chr78784822587848258-CDS,intron-Distal,intron-Proximal4.8134924.25629K562DDX3X
chr78784647087846506-CDS,intron-Distal3.0221713.32910K562DDX3X
chr78784644987846506-CDS,intron-Distal4.634928.19993K562FTO
chr78783662187836750-intron-Distal4.082314.10688K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SRI is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SRI is not available on ENCORE database.

  • 63 RBPs can affect the levels of SRI.  








The Knockdown/knockout RNA-Seq assay for SRI is not available on ENCORE database.





63 RBPs can affect the gene expression of SRI :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SRIENSG00000075142.944.635601.208505.206808.835707.94530HepG2AKAP1
SRIENSG00000075142.971.637601.028706.1218015.8672014.30350HepG2EIF4B
SRIENSG00000075142.916.944201.065903.990503.409802.64710HepG2FXR1
SRIENSG00000075142.92.8624029.17370-3.349405.704104.71980HepG2HNRNPF
SRIENSG00000075142.90.6608010.83700-4.035602.247701.63140HepG2HNRNPL
SRIENSG00000075142.95.7829028.72680-2.312503.769802.93550HepG2IGF2BP1
SRIENSG00000075142.948.8120012.123502.009303.996603.04810HepG2PRPF8
SRIENSG00000075142.911.900200.0000099999.999903.546002.94340HepG2PTBP1
SRIENSG00000075142.9204.586207.923104.6904043.8602042.27140HepG2RBM22
SRIENSG00000075142.919.804900.0000099999.999905.348304.63590HepG2NELFE
SRIENSG00000075142.99.0596031.44250-1.795202.931002.23070HepG2RPLP0
SRIENSG00000075142.911.778401.314403.163602.000501.46970HepG2RPS19
SRIENSG00000075142.951.239507.070202.857307.338606.07380HepG2RPS2
SRIENSG00000075142.90.0000010.81260-99999.999992.865902.15250HepG2SLBP
SRIENSG00000075142.99.983500.0000099999.999902.632002.16770HepG2SRSF1
SRIENSG00000075142.98.2862028.66580-1.790502.936902.22320HepG2SRSF7
SRIENSG00000075142.9135.8099015.645303.117708.745807.65360HepG2SUPV3L1
SRIENSG00000075142.90.000009.24210-99999.999992.713701.96120HepG2UCHL5
SRIENSG00000075142.921.437305.149002.057702.398701.41320HepG2XRCC6
SRIENSG00000075142.92941.789201933.089700.6057016.8983015.61890K562AGGF1
SRIENSG00000075142.92559.699802124.245100.268902.306101.42090K562AKAP8
SRIENSG00000075142.92508.508902011.485100.318502.998802.31800K562AKAP8L
SRIENSG00000075142.91296.400302288.38410-0.8198013.2256012.07880K562AQR
SRIENSG00000075142.92472.742902110.565400.228402.469001.60970K562ATP5C1
SRIENSG00000075142.91074.624601301.99590-0.276902.723701.76980K562BCLAF1
SRIENSG00000075142.9479.13050875.24730-0.869309.975308.27140K562BOP1
SRIENSG00000075142.91903.143602310.09090-0.279602.518501.40430K562CCDC124
SRIENSG00000075142.9487.12200930.63720-0.9339014.3815012.56050K562CPSF6
SRIENSG00000075142.9907.316201141.87260-0.331703.437501.94700K562DDX27
SRIENSG00000075142.92655.411502164.391400.294903.992602.91460K562DKC1
SRIENSG00000075142.9895.730301154.27200-0.365802.673801.77730K562EFTUD2
SRIENSG00000075142.91096.527001546.22950-0.495807.746306.63210K562EIF2S2
SRIENSG00000075142.9938.011201235.83960-0.397802.443901.47780K562EIF3D
SRIENSG00000075142.9856.425001099.82900-0.360903.426302.54650K562EIF3G
SRIENSG00000075142.9778.069401240.04000-0.672408.372506.94330K562EIF4A3
SRIENSG00000075142.91896.859401224.979000.630808.274306.71980K562FIP1L1
SRIENSG00000075142.9688.32260946.90480-0.460103.569202.59430K562FMR1
SRIENSG00000075142.9528.60650802.58880-0.602504.814203.57550K562FTO
SRIENSG00000075142.9990.210801289.59230-0.381104.352203.61730K562FXR1
SRIENSG00000075142.9513.76250888.52810-0.790309.629008.13630K562GPKOW
SRIENSG00000075142.9446.311101099.26660-1.3004020.4416018.89770K562HNRNPC
SRIENSG00000075142.9739.12590981.93840-0.409803.364302.09770K562HNRNPF
SRIENSG00000075142.91890.722601550.005100.286602.457001.46820K562HNRNPL
SRIENSG00000075142.92133.443701815.881800.232402.231901.42960K562HNRNPU
SRIENSG00000075142.92099.002301660.851400.337702.713501.92650K562HSPD1
SRIENSG00000075142.92869.562502134.626600.426705.569704.30760K562KIF1C
SRIENSG00000075142.9523.59640758.69600-0.535103.118002.11980K562KRR1
SRIENSG00000075142.91300.785901640.14980-0.334403.019402.14040K562MAGOH
SRIENSG00000075142.9665.83890867.30320-0.381402.972902.06290K562METAP2
SRIENSG00000075142.91086.145501272.12840-0.228002.228101.49900K562MTPAP
SRIENSG00000075142.92318.380101676.154300.467903.370002.37870K562NAA15
SRIENSG00000075142.92267.507001275.323400.830104.435003.10270K562PABPN1
SRIENSG00000075142.91023.286801459.39780-0.512205.578404.17910K562PCBP2
SRIENSG00000075142.9580.52110752.22740-0.373802.855502.04120K562POLR2G
SRIENSG00000075142.91835.531601390.552300.400403.504802.56310K562PPIG
SRIENSG00000075142.9709.49060985.68890-0.474304.187003.04190K562PSIP1
SRIENSG00000075142.9941.628101593.47930-0.7590013.3110011.90810K562PTBP1
SRIENSG00000075142.92251.852702811.12920-0.320002.467601.69900K562PUF60
SRIENSG00000075142.92366.057802929.65550-0.308204.031602.86790K562PUM2
SRIENSG00000075142.92756.404801994.715300.466505.027104.32300K562PUS1
SRIENSG00000075142.92602.228901943.653900.420906.645805.75220K562RBM15
SRIENSG00000075142.91094.751301528.16790-0.481204.925203.76410K562RBM22
SRIENSG00000075142.9677.94010899.70460-0.408303.061402.01220K562RCC2
SRIENSG00000075142.9611.59920852.85540-0.479703.456902.27730K562SRFBP1
SRIENSG00000075142.91245.731701562.09750-0.326502.963302.23440K562SRSF1
SRIENSG00000075142.91417.122101134.495400.320803.466402.00590K562SSB
SRIENSG00000075142.9784.485801087.49280-0.471203.392502.25600K562SUPV3L1
SRIENSG00000075142.9811.704701007.58570-0.311902.131201.31650K562TRIM56
SRIENSG00000075142.92591.777903170.05490-0.290603.338201.78130K562UBE2L3
SRIENSG00000075142.9717.816101151.00060-0.681207.319805.59020K562UCHL5
SRIENSG00000075142.91125.859801498.77470-0.412806.319005.28530K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SRI is not available on ENCORE database.





1 RBPs can affect the splicing of SRI :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSSRIENSG00000075142.9chr7-8783575287835939878357528783581987837821878378800.053000.000000.00000longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SRI is not avaliable on ENCORE database.