SMARCD3

General Information

Gene Name       : SMARCD3
Gene ID             : ENSG00000082014.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SMARCD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMARCD3ENSG00000082014.160.540.080.31ENCSR000AEF
HepG2SMARCD3ENSG00000082014.161.090.911.00ENCSR985KAT
K562SMARCD3ENSG00000082014.161.391.781.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMARCD3 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on SMARCD3 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SMARCD3 is not avaliable on ENCORE database.






NO known proteins are bound to SMARCD3 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SMARCD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMARCD3 is not available on ENCORE database.

  • 83 RBPs can affect the levels of SMARCD3.  








The Knockdown/knockout RNA-Seq assay for SMARCD3 is not available on ENCORE database.





83 RBPs can affect the gene expression of SMARCD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMARCD3ENSG00000082014.1238.8838014.702201.403002.598102.00560HepG2ACO1
SMARCD3ENSG00000082014.1230.690803.582503.098704.034603.40930HepG2AKAP1
SMARCD3ENSG00000082014.1211.8311044.75610-1.919502.656302.06890HepG2BOP1
SMARCD3ENSG00000082014.1243.4806014.693901.565103.312502.59590HepG2CKAP4
SMARCD3ENSG00000082014.1254.715503.430303.995409.764008.65200HepG2DDX3X
SMARCD3ENSG00000082014.1219.646202.950102.735302.719702.10730HepG2DDX6
SMARCD3ENSG00000082014.1234.397109.264401.892402.508401.62780HepG2EEF2
SMARCD3ENSG00000082014.124.7085028.09680-2.577103.715102.77960HepG2EIF4G2
SMARCD3ENSG00000082014.1218.454602.930402.654702.069701.49060HepG2G3BP1
SMARCD3ENSG00000082014.1229.012006.694602.115503.164902.19920HepG2GEMIN5
SMARCD3ENSG00000082014.1256.9022021.983201.372002.979001.92110HepG2GNB2L1
SMARCD3ENSG00000082014.12107.5404046.594101.206604.068403.30440HepG2GPKOW
SMARCD3ENSG00000082014.1215.9665066.56840-2.059806.763305.70820HepG2HNRNPF
SMARCD3ENSG00000082014.126.5430044.46460-2.764603.867303.13430HepG2HNRNPLL
SMARCD3ENSG00000082014.1240.7873014.423601.499602.789501.83620HepG2HNRNPM
SMARCD3ENSG00000082014.1243.116406.288302.777405.618703.88190HepG2HSPD1
SMARCD3ENSG00000082014.1216.3487065.55130-2.003406.054605.02510HepG2IGF2BP1
SMARCD3ENSG00000082014.1220.782902.798202.892702.262001.37990HepG2IGF2BP3
SMARCD3ENSG00000082014.1240.132203.179803.657706.576905.63650HepG2MATR3
SMARCD3ENSG00000082014.1226.117903.254003.004603.814803.07660HepG2NCBP2
SMARCD3ENSG00000082014.129.3205039.41760-2.080402.805002.05110HepG2NSUN2
SMARCD3ENSG00000082014.1229.885903.195003.225504.801504.12360HepG2PTBP1
SMARCD3ENSG00000082014.1292.8278029.852401.636606.215305.22440HepG2PUM2
SMARCD3ENSG00000082014.1230.012203.557703.076404.270403.62430HepG2NELFE
SMARCD3ENSG00000082014.1217.0010071.70370-2.076406.437505.45800HepG2RPLP0
SMARCD3ENSG00000082014.1281.500707.317903.4772013.1178011.90510HepG2RPS19
SMARCD3ENSG00000082014.1247.551208.156202.543403.900302.22660HepG2SF1
SMARCD3ENSG00000082014.1264.7071010.509202.622206.312305.26980HepG2SF3A3
SMARCD3ENSG00000082014.1229.315903.330603.137704.480303.75520HepG2SF3B4
SMARCD3ENSG00000082014.128.0639026.98230-1.742502.386801.72860HepG2SLBP
SMARCD3ENSG00000082014.1237.5839015.651601.263702.171401.59040HepG2SMN1
SMARCD3ENSG00000082014.12112.699203.474705.0193024.1116023.01660HepG2SRSF1
SMARCD3ENSG00000082014.1213.9973065.39970-2.224107.344106.29630HepG2SRSF7
SMARCD3ENSG00000082014.1227.688106.265802.143603.157601.79110HepG2SSRP1
SMARCD3ENSG00000082014.1228.662206.154402.219402.878501.79110HepG2TBRG4
SMARCD3ENSG00000082014.12204.6025014.650903.8037037.7798036.32260HepG2TIAL1
SMARCD3ENSG00000082014.12178.9545042.954402.0586011.6061010.53810K562AGGF1
SMARCD3ENSG00000082014.12106.1319047.199801.168904.626403.27630K562AKAP8
SMARCD3ENSG00000082014.12108.8602044.695801.284205.146504.24360K562AKAP8L
SMARCD3ENSG00000082014.1281.5620035.328301.207003.467601.84240K562BUD13
SMARCD3ENSG00000082014.12104.3063045.698201.190504.001702.21590K562CKAP4
SMARCD3ENSG00000082014.1288.5541043.999801.009003.117801.93680K562CPEB4
SMARCD3ENSG00000082014.1280.4251029.830401.430804.627602.25020K562YBX3
SMARCD3ENSG00000082014.12156.5721086.646100.853503.627002.50980K562CELF1
SMARCD3ENSG00000082014.1286.7463031.806801.447405.929903.99310K562DDX27
SMARCD3ENSG00000082014.12219.8700045.510302.2723023.0676021.37430K562DDX47
SMARCD3ENSG00000082014.1268.2613030.576901.158503.028501.63630K562DHX30
SMARCD3ENSG00000082014.12165.8209029.776302.4773016.4610014.02020K562EFTUD2
SMARCD3ENSG00000082014.12142.7101027.780602.360804.864103.48950K562EIF3A
SMARCD3ENSG00000082014.12166.5791031.865202.3861014.7515012.19920K562EIF3D
SMARCD3ENSG00000082014.1271.7252019.841401.853904.948703.89980K562EIF3G
SMARCD3ENSG00000082014.1278.8551026.522301.571904.261202.13350K562FAM120A
SMARCD3ENSG00000082014.12137.5728039.584801.797109.529507.25680K562FKBP4
SMARCD3ENSG00000082014.12108.1693042.098001.361404.644003.53230K562FMR1
SMARCD3ENSG00000082014.1298.8647029.854401.727406.288004.15290K562GEMIN5
SMARCD3ENSG00000082014.1284.2383039.502401.092403.026102.19680K562GPKOW
SMARCD3ENSG00000082014.12100.3882043.823201.195703.696002.82620K562GRSF1
SMARCD3ENSG00000082014.12107.8459045.565201.242904.387203.65250K562HNRNPC
SMARCD3ENSG00000082014.12118.0908059.469000.989604.013701.72800K562HNRNPH1
SMARCD3ENSG00000082014.1282.8284029.992101.465404.705203.46170K562HNRNPM
SMARCD3ENSG00000082014.12114.3004052.728701.116104.604503.44760K562HNRNPU
SMARCD3ENSG00000082014.12103.4718049.428401.065703.404702.52250K562HSPD1
SMARCD3ENSG00000082014.12118.4223059.253400.998902.796901.36850K562ILF2
SMARCD3ENSG00000082014.12135.3398044.146101.616108.617306.07050K562LARP7
SMARCD3ENSG00000082014.12149.7459033.121502.1766015.3961013.29040K562MAGOH
SMARCD3ENSG00000082014.12273.3110053.137902.3626026.5353023.51290K562MBNL1
SMARCD3ENSG00000082014.1278.5851033.846901.215102.788901.97570K562MTPAP
SMARCD3ENSG00000082014.1280.6531037.592401.101202.730301.98780K562NSUN2
SMARCD3ENSG00000082014.1278.7673036.395301.113702.331101.43730K562PABPN1
SMARCD3ENSG00000082014.12129.0193029.461602.130607.647605.99460K562PCBP2
SMARCD3ENSG00000082014.12177.8144028.976202.6173017.0630015.17010K562PRPF8
SMARCD3ENSG00000082014.12234.0362040.856102.5180015.6053013.10210K562PSIP1
SMARCD3ENSG00000082014.12223.8909032.183002.7983030.9944028.85320K562PTBP1
SMARCD3ENSG00000082014.12149.7983080.159300.902004.047202.88090K562PUM2
SMARCD3ENSG00000082014.12117.2435044.326901.403205.639204.89670K562PUS1
SMARCD3ENSG00000082014.1261.1854030.834800.988502.354401.58460K562RBM22
SMARCD3ENSG00000082014.12135.5369044.778501.597705.329602.99700K562RBM39
SMARCD3ENSG00000082014.12428.5521029.503703.8604053.4164050.12220K562RPS19
SMARCD3ENSG00000082014.12130.2506057.872201.170204.007702.08230K562RPS3A
SMARCD3ENSG00000082014.1275.1716029.742601.337602.959301.92100K562RPS3
SMARCD3ENSG00000082014.12171.3068033.294802.363109.972107.23380K562SF1
SMARCD3ENSG00000082014.12143.8212037.115701.9541012.7923011.14050K562SF3A3
SMARCD3ENSG00000082014.1287.7114037.568701.223103.427802.34280K562SF3B1
SMARCD3ENSG00000082014.1282.5704030.147801.453505.443904.21810K562SF3B4
SMARCD3ENSG00000082014.1290.6566040.605201.158602.927901.57050K562SFPQ
SMARCD3ENSG00000082014.1285.2029030.079601.502005.302503.52180K562SLBP
SMARCD3ENSG00000082014.12170.8224038.221002.1600010.013307.18680K562SNRNP200
SMARCD3ENSG00000082014.1286.3276035.344901.288203.931002.64150K562SRFBP1
SMARCD3ENSG00000082014.1274.2984038.027700.966202.600501.68850K562SRPK2
SMARCD3ENSG00000082014.12115.1735031.555201.867809.020907.75300K562SRSF1
SMARCD3ENSG00000082014.12110.1976062.765700.811902.891501.33630K562SRSF9
SMARCD3ENSG00000082014.1278.9063028.034201.492904.206202.93000K562SUPV3L1
SMARCD3ENSG00000082014.1259.8125031.924900.905701.948701.34820K562TARDBP
SMARCD3ENSG00000082014.1287.1618039.295501.149203.342202.30840K562TIAL1
SMARCD3ENSG00000082014.12111.8934041.757401.421905.635304.17010K562TRIM56
SMARCD3ENSG00000082014.1255.8556029.027000.944202.044301.35500K562U2AF2
SMARCD3ENSG00000082014.1270.8608029.681301.255303.045801.97240K562UCHL5
SMARCD3ENSG00000082014.1293.8205035.479201.402805.986804.79200K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMARCD3 is not available on ENCORE database.





1 RBPs can affect the splicing of SMARCD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
RISMARCD3ENSG00000082014.12chr7-1509375101509387391509375101509376081509385771509387390.361000.005110.05296includedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMARCD3 is not avaliable on ENCORE database.