SMARCB1

General Information

Gene Name       : SMARCB1
Gene ID             : ENSG00000099956.19
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SMARCB1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SMARCB1ENSG00000099956.1981.98135.03108.50ENCSR000AEF
HepG2SMARCB1ENSG00000099956.19156.61104.20130.41ENCSR985KAT
K562SMARCB1ENSG00000099956.1980.2974.9677.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SMARCB1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SMARCB1 RNA is bound by 21 proteins.  







eCLIP assay for SMARCB1 is not avaliable on ENCORE database.





21 proteins are bound to SMARCB1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222417661524176673+3'-UTR3.982616.14808K562UPF1
chr222417638924176527+3'-UTR4.5230111.02367HepG2UPF1
chr222412917124129242+5'-UTR4.1305810.68796HepG2DDX3X
chr222412916024129245+5'-UTR3.694924.46401K562DDX3X
chr222412930924129375+5'-UTR,CDS3.329773.59926K562DDX3X
chr222412917124129231+5'-UTR3.419673.28035HepG2NCBP2
chr222412916724129222+5'-UTR3.787515.00225K562GEMIN5
chr222412927224129352+5'-UTR3.024496.66900HepG2GRWD1
chr222412924524129309+5'-UTR5.618929.75665K562DDX3X
chr222412925724129349+5'-UTR4.045807.10584K562GEMIN5
chr222416746624167552+CDS3.432153.22540HepG2G3BP1
chr222414321524143242+CDS,intron-Distal4.561706.69007K562YBX3
chr222414559924145654+CDS,intron-Proximal4.1346310.95071HepG2PRPF8
chr222414546024145562+CDS,intron-Proximal3.135366.18258HepG2U2AF2
chr222414316624143215+CDS,intron-Distal3.810697.06377K562YBX3
chr222414542324145485+CDS,intron-Proximal4.996308.74981HepG2SF3B4
chr222415906024159118+CDS3.727944.68902HepG2PPIG
chr222415900124159106+CDS3.8839814.80913HepG2GRWD1
chr222414324224143264+CDS,intron-Distal3.767293.25175K562YBX3
chr222415900124159088+CDS3.338667.98531K562YBX3
chr222417575924175777+CDS3.606333.01531K562YBX3
chr222416754324167602+CDS4.878087.83423K562YBX3
chr222415910624159165+CDS,intron-Proximal3.058924.20273HepG2PRPF8
chr222414325424143308+CDS,intron-Distal,intron-Proximal4.034105.73990HepG2PRPF8
chr222414462224144751+intron-Distal3.871938.73025HepG2MATR3
chr222413481524134896+intron-Distal4.9697911.57060HepG2RBFOX2
chr222413475124134815+intron-Distal4.6333518.62779HepG2RBFOX2
chr222414403624144083+intron-Distal4.480163.27829HepG2MATR3
chr222414456024144709+intron-Distal5.8380667.77485HepG2PCBP2
chr222414461924144741+intron-Distal5.687578.93487K562PTBP1
chr222413418624134239+intron-Distal4.0393314.14830HepG2RBFOX2
chr222413414124134186+intron-Distal,intron-Proximal5.048296.07369HepG2RBFOX2
chr222413437824134436+intron-Distal5.5498611.23022HepG2RBFOX2
chr222417485524174922+intron-Distal3.080563.27165HepG2RBFOX2
chr222414673524146787+intron-Distal3.147425.39438HepG2HNRNPC
chr222413441824134467+intron-Distal3.780314.09469HepG2XPO5
chr222414471524144760+intron-Distal4.6168710.39610HepG2PCBP2
chr222413443724134487+intron-Distal6.0302617.05852HepG2RBFOX2
chr222413472124134751+intron-Distal4.807366.62122HepG2RBFOX2
chr222413451524134536+intron-Distal3.808827.28428HepG2RBFOX2
chr222414467224144802+intron-Distal4.257943.91009K562HNRNPK
chr222414372624143767+intron-Distal4.058034.10336HepG2SUGP2
chr222414530724145367+intron-Distal3.759783.05889HepG2SF3B4
chr222414391824144013+intron-Distal4.926517.65425HepG2SUGP2
chr222413448224134640+intron-Distal3.996524.25630HepG2DROSHA
chr222413461424134656+intron-Distal6.2391220.04312HepG2RBFOX2
chr222414471524144756+intron-Distal3.925555.07626HepG2PTBP1
chr222414594024146027+intron-Distal3.042163.87604HepG2RBFOX2
chr222414465724144759+intron-Distal3.587609.25091HepG2HNRNPK
chr222413448724134515+intron-Distal3.992349.37235HepG2RBFOX2
chr222414457424144715+intron-Distal4.1252528.05890HepG2PTBP1
chr222413465624134711+intron-Distal5.8175312.50172HepG2RBFOX2
chr222413563524135724+intron-Distal,intron-Proximal4.261297.84681HepG2RBFOX2
chr222413454324134614+intron-Distal5.5589448.47021HepG2RBFOX2
chr222414381024143900+intron-Distal4.282053.65854HepG2RBFOX2
chr222413565524135742+intron-Proximal4.861684.69961K562SF3B4
chr222413566524135742+intron-Proximal3.012603.29220HepG2SF3B4
chr222414542524145473+intron-Proximal4.807269.22974HepG2SF3A3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SMARCB1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SMARCB1 is not available on ENCORE database.

  • 76 RBPs can affect the levels of SMARCB1.  








The Knockdown/knockout RNA-Seq assay for SMARCB1 is not available on ENCORE database.





76 RBPs can affect the gene expression of SMARCB1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SMARCB1ENSG00000099956.13878.539301245.33700-0.503404.958403.56340HepG2AATF
SMARCB1ENSG00000099956.131882.335601623.340200.213502.465701.88630HepG2ACO1
SMARCB1ENSG00000099956.132529.619301992.875800.344002.153701.67800HepG2AKAP1
SMARCB1ENSG00000099956.131208.060001561.03480-0.369802.454501.47140HepG2AKAP8
SMARCB1ENSG00000099956.132037.883401648.836000.305502.030701.35380HepG2ASCC1
SMARCB1ENSG00000099956.13945.564001176.88030-0.315702.126901.33400HepG2BCLAF1
SMARCB1ENSG00000099956.131134.965601486.22550-0.389003.354502.70240HepG2BOP1
SMARCB1ENSG00000099956.13488.137301382.47450-1.5019040.9700038.75070HepG2CALR
SMARCB1ENSG00000099956.13818.300801364.43400-0.737609.185108.00190HepG2CPSF6
SMARCB1ENSG00000099956.13907.083601219.98780-0.427605.066403.53310HepG2DDX1
SMARCB1ENSG00000099956.131033.803401373.51730-0.409903.705302.92930HepG2DDX21
SMARCB1ENSG00000099956.13963.787301344.47950-0.480305.337104.06190HepG2DDX24
SMARCB1ENSG00000099956.131560.545801908.80660-0.290601.854601.33160HepG2DDX3X
SMARCB1ENSG00000099956.131239.324201581.90200-0.352102.687601.68920HepG2DDX5
SMARCB1ENSG00000099956.131399.747901196.265800.226501.979501.37370HepG2DNAJC21
SMARCB1ENSG00000099956.131591.272302022.52900-0.346003.047502.17670HepG2EIF4G1
SMARCB1ENSG00000099956.131552.035501937.38910-0.320002.236101.49880HepG2EIF4G2
SMARCB1ENSG00000099956.132115.664302570.59200-0.281004.253803.53560HepG2ETF1
SMARCB1ENSG00000099956.131045.761401309.11640-0.324002.649301.52710HepG2FASTKD2
SMARCB1ENSG00000099956.13975.782201207.72650-0.307702.174701.59590HepG2HNRNPA1
SMARCB1ENSG00000099956.132002.200601651.915900.277301.937401.34720HepG2HNRNPK
SMARCB1ENSG00000099956.131162.592901476.03220-0.344402.452501.85470HepG2HNRNPLL
SMARCB1ENSG00000099956.131681.507801334.493300.333404.665103.89490HepG2HNRNPU
SMARCB1ENSG00000099956.131225.131401758.68360-0.521604.075303.28160HepG2MAGOH
SMARCB1ENSG00000099956.131370.710501768.40560-0.367502.428801.83480HepG2MATR3
SMARCB1ENSG00000099956.131233.364601618.23400-0.391802.146001.42890HepG2MSI2
SMARCB1ENSG00000099956.131111.633601505.37280-0.437402.222001.35930HepG2MTPAP
SMARCB1ENSG00000099956.131438.314401809.96300-0.331602.211101.64280HepG2NCBP2
SMARCB1ENSG00000099956.131001.336001308.78880-0.386302.893702.12830HepG2NSUN2
SMARCB1ENSG00000099956.131176.732701611.43760-0.453603.695402.86900HepG2PABPC4
SMARCB1ENSG00000099956.131493.531601846.97520-0.306404.050303.34320HepG2PCBP1
SMARCB1ENSG00000099956.13769.932401027.08970-0.415803.161602.30390HepG2PRPF8
SMARCB1ENSG00000099956.131351.830301879.39740-0.475408.218107.37850HepG2PTBP1
SMARCB1ENSG00000099956.131662.780202059.88110-0.309002.624502.04370HepG2PUM1
SMARCB1ENSG00000099956.131349.017501653.46720-0.293603.960703.24860HepG2PUS1
SMARCB1ENSG00000099956.13855.585201173.13390-0.455401.985601.37860HepG2RAVER1
SMARCB1ENSG00000099956.131751.519202148.53570-0.294703.227902.67980HepG2RBM22
SMARCB1ENSG00000099956.131133.559201847.25190-0.7045011.4753010.16220HepG2RBM25
SMARCB1ENSG00000099956.131469.772102091.56300-0.509009.871308.96530HepG2NELFE
SMARCB1ENSG00000099956.131534.335301948.05350-0.344404.924904.13310HepG2RECQL
SMARCB1ENSG00000099956.131505.515501891.37620-0.329202.767702.08480HepG2RPLP0
SMARCB1ENSG00000099956.13803.050301015.97060-0.339302.109701.41490HepG2RRP9
SMARCB1ENSG00000099956.131472.045501956.63960-0.410606.627605.77550HepG2SF3B4
SMARCB1ENSG00000099956.131181.837201625.59440-0.459902.418701.69030HepG2SNRNP70
SMARCB1ENSG00000099956.131711.558602426.68570-0.5037012.3063011.45040HepG2SRFBP1
SMARCB1ENSG00000099956.131068.324601572.02540-0.557304.242402.97520HepG2SRSF3
SMARCB1ENSG00000099956.131223.735401661.56450-0.441307.667306.83280HepG2SRSF9
SMARCB1ENSG00000099956.131500.879302178.83050-0.537705.282504.47160HepG2SUCLG1
SMARCB1ENSG00000099956.13943.700101325.76080-0.490404.141403.33860HepG2SUPV3L1
SMARCB1ENSG00000099956.131405.741501835.78970-0.385104.860804.15040HepG2TAF15
SMARCB1ENSG00000099956.13947.382301438.68880-0.602706.791105.72280HepG2TARDBP
SMARCB1ENSG00000099956.13920.079301296.69960-0.495006.179205.48510HepG2TIAL1
SMARCB1ENSG00000099956.13579.28590783.09960-0.434903.196402.38180HepG2UCHL5
SMARCB1ENSG00000099956.131095.207401470.91470-0.425503.327902.69650K562AQR
SMARCB1ENSG00000099956.13562.10220880.80020-0.648006.053804.75200K562BOP1
SMARCB1ENSG00000099956.13624.56140936.51800-0.584506.478405.27760K562CPSF6
SMARCB1ENSG00000099956.131828.927601406.847500.378405.569304.69270K562DDX47
SMARCB1ENSG00000099956.131707.606301389.650000.297203.310802.34320K562DKC1
SMARCB1ENSG00000099956.13771.90770483.650300.674404.496603.49240K562EIF3G
SMARCB1ENSG00000099956.13730.22940952.93380-0.384002.800101.94150K562FMR1
SMARCB1ENSG00000099956.13613.71940807.71860-0.396302.552601.67690K562FTO
SMARCB1ENSG00000099956.13999.38490779.974000.357503.487602.82000K562FXR1
SMARCB1ENSG00000099956.13158.51030410.41030-1.3725012.2039010.50260K562G3BP2
SMARCB1ENSG00000099956.131978.208801442.463900.455604.573303.55690K562HSPD1
SMARCB1ENSG00000099956.13559.21030763.52340-0.449302.374101.51820K562KRR1
SMARCB1ENSG00000099956.131605.025002096.08660-0.385103.365202.11820K562MSI2
SMARCB1ENSG00000099956.13796.930801076.13700-0.433302.434201.61840K562NAA15
SMARCB1ENSG00000099956.131173.504401411.27710-0.266203.444902.62110K562NSUN2
SMARCB1ENSG00000099956.13809.224101340.92860-0.728607.843506.44110K562PCBP3
SMARCB1ENSG00000099956.13662.711701028.54800-0.634208.083906.73760K562POLR2G
SMARCB1ENSG00000099956.131556.283801207.860900.365602.969502.11540K562PPIG
SMARCB1ENSG00000099956.131831.490502282.05440-0.317303.094601.96500K562PUM1
SMARCB1ENSG00000099956.13706.654001280.72910-0.857907.917407.04600K562PUS1
SMARCB1ENSG00000099956.13243.74090391.57630-0.683902.809301.37900K562RAVER1
SMARCB1ENSG00000099956.131047.402401247.85890-0.252602.012401.49180K562RBM15
SMARCB1ENSG00000099956.13799.67870640.157600.320902.047801.32980K562RBM22
SMARCB1ENSG00000099956.131063.994101392.43480-0.388102.939402.10170K562SF3A3
SMARCB1ENSG00000099956.13538.63620426.733200.335902.116601.37040K562SF3B4
SMARCB1ENSG00000099956.13899.47430654.729500.458103.386302.60950K562SRSF1
SMARCB1ENSG00000099956.13960.727001276.73570-0.410302.989101.68210K562STAU1
SMARCB1ENSG00000099956.131361.591201872.05570-0.459306.026603.92060K562SUCLG1
SMARCB1ENSG00000099956.13501.59050803.26960-0.679405.895904.37310K562SUPV3L1
SMARCB1ENSG00000099956.131392.586401031.646500.432704.860303.76510K562SYNCRIP
SMARCB1ENSG00000099956.13905.48480662.538900.450603.453702.65940K562TARDBP
SMARCB1ENSG00000099956.13882.24660639.117200.465004.269503.21990K562TIA1
SMARCB1ENSG00000099956.13682.58330886.59410-0.377302.303301.45540K562TIAL1
SMARCB1ENSG00000099956.13235.87650397.79700-0.754003.308002.08980K562U2AF1
SMARCB1ENSG00000099956.13243.18320410.84550-0.756606.688405.44730K562U2AF2
SMARCB1ENSG00000099956.131160.688201496.39980-0.366503.145702.38230K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SMARCB1 is not available on ENCORE database.





9 RBPs can affect the splicing of SMARCB1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A5SSSMARCB1ENSG00000099956.13chr22+241339422413408124133942241340542413574524135875-0.171000.000830.08061shorterHepG2SRSF9
A5SSSMARCB1ENSG00000099956.13chr22+241339422413408124133942241340542413574524135875-0.115000.000320.08083shorterHepG2DDX59
A5SSSMARCB1ENSG00000099956.13chr22+241339422413408124133942241340542413574524135875-0.157000.000190.08218shorterHepG2TIA1
A5SSSMARCB1ENSG00000099956.13chr22+2414313024143322241431302414326824145481241456090.073000.000340.04270longerK562PTBP1
A5SSSMARCB1ENSG00000099956.13chr22+2413394224134081241339422413405424135745241358750.144000.000180.04223longerHepG2TBRG4
A5SSSMARCB1ENSG00000099956.13chr22+2413394224134081241339422413405424135745241358750.164000.000890.06995longerK562FXR1
A5SSSMARCB1ENSG00000099956.13chr22+241339422413408124133942241340542413574524135875-0.153000.000330.09458shorterHepG2HNRNPC
A5SSSMARCB1ENSG00000099956.13chr22+241339422413408124133942241340542413574524135875-0.164000.000140.08644shorterHepG2NOL12
A5SSSMARCB1ENSG00000099956.13chr22+241339422413409724133942241340542413574524135875-0.123000.000320.09937shorterHepG2RBFOX2
A5SSSMARCB1ENSG00000099956.13chr22+2413394224134081241339422413405424135745241358750.191000.000010.00436longerHepG2PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SMARCB1 is not avaliable on ENCORE database.