SLC24A1

General Information

Gene Name       : SLC24A1
Gene ID             : ENSG00000074621.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLC24A1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SLC24A1ENSG00000074621.133.102.933.02ENCSR000AEF
HepG2SLC24A1ENSG00000074621.135.626.115.87ENCSR985KAT
K562SLC24A1ENSG00000074621.135.114.564.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLC24A1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLC24A1 RNA is bound by 2 proteins.  







eCLIP assay for SLC24A1 is not avaliable on ENCORE database.





2 proteins are bound to SLC24A1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156590373565903848+5'-UTR4.814925.36996HepG2PCBP2
chr156591812265918261+CDS,intron-Proximal3.494495.14253HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLC24A1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLC24A1 is not available on ENCORE database.

  • 79 RBPs can affect the levels of SLC24A1.  








The Knockdown/knockout RNA-Seq assay for SLC24A1 is not available on ENCORE database.





79 RBPs can affect the gene expression of SLC24A1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLC24A1ENSG00000074621.9428.51700551.45020-0.363902.917502.29570HepG2ACO1
SLC24A1ENSG00000074621.9301.24770431.41750-0.518103.101302.05040HepG2ADAR
SLC24A1ENSG00000074621.9368.40490519.40020-0.495602.739401.70480HepG2AKAP8
SLC24A1ENSG00000074621.9371.54700554.02750-0.576405.943704.85670HepG2AKAP8L
SLC24A1ENSG00000074621.9732.38130875.03870-0.256802.186401.56320HepG2AUH
SLC24A1ENSG00000074621.9249.54760441.21150-0.822205.166103.88070HepG2BCCIP
SLC24A1ENSG00000074621.9377.81710712.57010-0.9153010.599509.52710HepG2BOP1
SLC24A1ENSG00000074621.9436.84310551.31400-0.335802.647301.99280HepG2CKAP4
SLC24A1ENSG00000074621.9417.02500526.02830-0.335002.178301.59740HepG2CELF1
SLC24A1ENSG00000074621.9330.83870443.03200-0.421302.821901.65140HepG2DDX1
SLC24A1ENSG00000074621.9326.35380452.32150-0.470902.962402.01400HepG2DDX24
SLC24A1ENSG00000074621.9480.30300328.641900.547303.482101.91430HepG2DDX28
SLC24A1ENSG00000074621.9611.42180430.576500.505805.840504.94560HepG2DNAJC2
SLC24A1ENSG00000074621.9331.51430454.71790-0.455902.047801.52870HepG2EIF2S1
SLC24A1ENSG00000074621.9754.742401004.69710-0.412704.373603.64820HepG2ETF1
SLC24A1ENSG00000074621.9381.78100538.85080-0.497103.668802.70760HepG2EWSR1
SLC24A1ENSG00000074621.9402.05670526.46710-0.388903.137002.10040HepG2HDGF
SLC24A1ENSG00000074621.9414.40390515.20140-0.314102.167501.56070HepG2HNRNPL
SLC24A1ENSG00000074621.9448.07080579.06940-0.370002.296601.43150HepG2HNRNPM
SLC24A1ENSG00000074621.9328.46080489.03360-0.574203.976402.52290HepG2LIN28B
SLC24A1ENSG00000074621.9363.01970521.97030-0.523902.009501.46510HepG2NCBP2
SLC24A1ENSG00000074621.9345.70490499.48500-0.530904.795204.03100HepG2PCBP1
SLC24A1ENSG00000074621.9230.25990334.66710-0.539502.437101.67710HepG2PRPF8
SLC24A1ENSG00000074621.9375.32720508.23530-0.437303.455202.85850HepG2PTBP1
SLC24A1ENSG00000074621.9714.90450568.330300.330903.312702.67620HepG2PUM1
SLC24A1ENSG00000074621.9727.72110550.451400.402703.138102.47960HepG2QKI
SLC24A1ENSG00000074621.9210.63120517.51230-1.296908.936907.71610HepG2RAVER1
SLC24A1ENSG00000074621.9374.85260499.56250-0.414302.599501.94280HepG2RBM25
SLC24A1ENSG00000074621.9391.35830631.40650-0.690105.933304.98880HepG2RPLP0
SLC24A1ENSG00000074621.9362.85180508.39080-0.486602.156801.32080HepG2RPS10
SLC24A1ENSG00000074621.9203.41900331.05780-0.702603.495902.62680HepG2RRP9
SLC24A1ENSG00000074621.9313.28050751.27210-1.2619014.3827012.77760HepG2SF3A3
SLC24A1ENSG00000074621.91050.68600779.375100.430802.045301.37770HepG2SNRNP70
SLC24A1ENSG00000074621.9400.63000552.31680-0.463203.798003.26620HepG2SRSF1
SLC24A1ENSG00000074621.9385.89850528.61240-0.454003.656802.95550HepG2SRSF5
SLC24A1ENSG00000074621.9834.38780601.170900.472806.048405.19280HepG2SUCLG1
SLC24A1ENSG00000074621.9751.69590566.735100.407403.263802.24830HepG2SUPT6H
SLC24A1ENSG00000074621.9583.66540456.167000.355502.332601.56280HepG2TIA1
SLC24A1ENSG00000074621.91012.00240717.942700.495203.931503.18780HepG2U2AF1
SLC24A1ENSG00000074621.9147.16840255.11060-0.793704.377603.42160HepG2UCHL5
SLC24A1ENSG00000074621.9514.91100666.26540-0.371803.349402.59370HepG2UPF1
SLC24A1ENSG00000074621.9255.12790395.46030-0.632302.518001.56350HepG2UPF2
SLC24A1ENSG00000074621.9408.97120643.25010-0.653407.778806.85590HepG2UTP3
SLC24A1ENSG00000074621.9580.44160707.02840-0.284602.328701.70520HepG2ZC3H8
SLC24A1ENSG00000074621.9525.49950732.76170-0.479705.966705.24340HepG2ZNF622
SLC24A1ENSG00000074621.9673.76250499.479300.431702.798201.56740K562ABCF1
SLC24A1ENSG00000074621.9287.77720680.85630-1.2424022.6000021.09050K562AGGF1
SLC24A1ENSG00000074621.9481.94960748.11220-0.634406.329804.69050K562AKAP8
SLC24A1ENSG00000074621.9302.09070708.45050-1.2297018.1990016.24020K562AKAP8L
SLC24A1ENSG00000074621.9227.62420432.45620-0.925906.631705.78690K562AQR
SLC24A1ENSG00000074621.9600.70230743.31380-0.307302.369601.52970K562ATP5C1
SLC24A1ENSG00000074621.9423.17750627.15170-0.567602.532001.52440K562CNOT7
SLC24A1ENSG00000074621.9393.35450258.783900.604004.156702.84320K562DDX3X
SLC24A1ENSG00000074621.9256.81050599.07390-1.2220021.0224019.38400K562DDX47
SLC24A1ENSG00000074621.9551.19500762.41440-0.468004.868003.65400K562DKC1
SLC24A1ENSG00000074621.9158.04650253.02410-0.678903.275202.27630K562EFTUD2
SLC24A1ENSG00000074621.9383.85780286.962100.419602.561101.86390K562EIF2S2
SLC24A1ENSG00000074621.9198.30500318.36220-0.682901.996301.31120K562EIF3G
SLC24A1ENSG00000074621.9181.35770281.14260-0.632504.010003.30110K562FXR1
SLC24A1ENSG00000074621.9269.88570556.47010-1.044005.383503.47650K562HNRNPA2B1
SLC24A1ENSG00000074621.9396.74060541.37580-0.448403.110501.98420K562HNRNPL
SLC24A1ENSG00000074621.9213.75570353.28140-0.724905.706204.41080K562HNRNPU
SLC24A1ENSG00000074621.9446.25540751.88270-0.752607.838906.27450K562KIF1C
SLC24A1ENSG00000074621.9292.48930399.14420-0.448502.812701.96540K562MAGOH
SLC24A1ENSG00000074621.9464.93690719.70460-0.630405.867804.09240K562MAK16
SLC24A1ENSG00000074621.9513.17060842.29300-0.714908.103206.38270K562MBNL1
SLC24A1ENSG00000074621.9276.83600590.38290-1.092607.444405.72720K562NAA15
SLC24A1ENSG00000074621.9195.78550486.87540-1.314307.421605.53390K562PABPN1
SLC24A1ENSG00000074621.9185.69990355.15550-0.935507.167705.56840K562PCBP2
SLC24A1ENSG00000074621.9629.83720438.230700.523203.389902.46820K562PCBP3
SLC24A1ENSG00000074621.9468.38740336.142300.478503.231702.36190K562POLR2G
SLC24A1ENSG00000074621.988.72310246.22150-1.4726010.343208.88740K562PRPF8
SLC24A1ENSG00000074621.980.26730387.78710-2.2724036.8469034.52190K562PTBP1
SLC24A1ENSG00000074621.9385.00430655.55870-0.767907.725806.35740K562PUF60
SLC24A1ENSG00000074621.9210.44270702.66950-1.7394027.2713025.55580K562PUS1
SLC24A1ENSG00000074621.9253.20350684.57850-1.4349026.4387024.52390K562RBM15
SLC24A1ENSG00000074621.9135.55370266.67980-0.976203.183701.75010K562RBM25
SLC24A1ENSG00000074621.9147.14090250.80680-0.769403.641102.70140K562RPS19
SLC24A1ENSG00000074621.9268.91570445.33010-0.727702.625101.46830K562SF1
SLC24A1ENSG00000074621.9362.79330464.46460-0.356402.203601.46880K562SF3A3
SLC24A1ENSG00000074621.9188.24490292.29470-0.634802.057501.32220K562SF3B4
SLC24A1ENSG00000074621.9168.66650511.32540-1.600109.767907.01420K562SNRNP200
SLC24A1ENSG00000074621.9179.63280380.15090-1.0815010.405609.04910K562SRSF1
SLC24A1ENSG00000074621.9266.27080349.25830-0.391402.451201.35350K562SRSF7
SLC24A1ENSG00000074621.9232.80480384.75860-0.724805.168604.18680K562TARDBP
SLC24A1ENSG00000074621.9610.85730499.133300.291302.026001.40540K562UPF1
SLC24A1ENSG00000074621.9377.99190712.35170-0.914205.064803.13250K562UTP18
SLC24A1ENSG00000074621.9353.72270444.10890-0.328302.188201.42870K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLC24A1 is not available on ENCORE database.





4 RBPs can affect the splicing of SLC24A1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLC24A1ENSG00000074621.9chr15+6594400765944097659427196594328065944979659451460.463000.001110.06231includedHepG2AKAP1
SESLC24A1ENSG00000074621.9chr15+6594400765944097659427196594328065944979659451460.509000.000910.04018includedHepG2MATR3
SESLC24A1ENSG00000074621.9chr15+6594400765944097659427196594328065944979659451460.543000.001650.09206includedHepG2IGF2BP3
SESLC24A1ENSG00000074621.9chr15+659440076594409765942719659432806594497965945146-0.620000.001460.05963excludedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLC24A1 is not avaliable on ENCORE database.