SH3BGR

General Information

Gene Name       : SH3BGR
Gene ID             : ENSG00000185437.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SH3BGR)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SH3BGRENSG00000185437.131.921.171.54ENCSR000AEF
HepG2SH3BGRENSG00000185437.130.180.710.44ENCSR985KAT
K562SH3BGRENSG00000185437.1314.2619.6216.94ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SH3BGR is not avaliable on ENCORE database.



Proteins bound to RNA
  • SH3BGR RNA is bound by 6 proteins.  







eCLIP assay for SH3BGR is not avaliable on ENCORE database.





6 proteins are bound to SH3BGR RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr214088360640883715+3'-UTR,CDS,intron-Distal,intron-Proximal4.020294.25199K562GRWD1
chr214088366440883730+3'-UTR,CDS,intron-Distal4.764095.10960K562ZNF622
chr214088704640887127+3'-UTR,CDS4.293743.25872K562IGF2BP1
chr214088360840883693+CDS,intron-Distal4.992428.63026K562TRA2A
chr214088092340880953+CDS,intron-Distal,intron-Proximal3.941953.69431K562TRA2A
chr214087175440871842+CDS,intron-Distal,intron-Proximal4.615366.46081K562TRA2A
chr214088361040883664+CDS,intron-Distal4.246223.52630K562AGGF1
chr214084301140843105+intron-Distal4.724574.40618K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SH3BGR is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SH3BGR is not available on ENCORE database.

  • 59 RBPs can affect the levels of SH3BGR.  








The Knockdown/knockout RNA-Seq assay for SH3BGR is not available on ENCORE database.





59 RBPs can affect the gene expression of SH3BGR :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SH3BGRENSG00000185437.962.5958011.783602.409205.683704.95360HepG2AKAP1
SH3BGRENSG00000185437.933.658309.712201.793002.589301.99120HepG2DDX6
SH3BGRENSG00000185437.940.1972010.279101.967303.577702.85320HepG2EIF4A3
SH3BGRENSG00000185437.938.4519010.030701.938502.043201.44740HepG2EIF4B
SH3BGRENSG00000185437.946.3415010.577302.131203.322602.20420HepG2FTO
SH3BGRENSG00000185437.935.6526011.969901.574502.337301.74530HepG2GPKOW
SH3BGRENSG00000185437.952.1747012.580602.052004.089503.13040HepG2SNRNP70
SH3BGRENSG00000185437.938.776807.575402.355704.813304.19090HepG2TIAL1
SH3BGRENSG00000185437.9123.96980216.07910-0.801603.943302.50240K562AARS
SH3BGRENSG00000185437.9814.060401095.40120-0.428305.396504.64560K562AGGF1
SH3BGRENSG00000185437.9836.302201203.60860-0.525305.575604.05940K562AKAP8
SH3BGRENSG00000185437.9688.963201139.79700-0.726304.360103.53300K562AKAP8L
SH3BGRENSG00000185437.9718.545101195.88800-0.734909.084507.30640K562ATP5C1
SH3BGRENSG00000185437.9730.36230372.475900.9714013.4924011.74280K562CPSF6
SH3BGRENSG00000185437.9797.63840554.586900.524204.469303.22070K562CELF1
SH3BGRENSG00000185437.9226.63530409.90340-0.854908.007506.97610K562DDX47
SH3BGRENSG00000185437.9584.14670253.552901.2039019.3610017.71500K562EIF2S2
SH3BGRENSG00000185437.958.99640124.40970-1.076402.861701.83840K562EIF3A
SH3BGRENSG00000185437.9108.44650285.08080-1.3944013.3383011.55790K562EIF3G
SH3BGRENSG00000185437.9172.16670258.03470-0.583802.716601.57860K562EIF4B
SH3BGRENSG00000185437.9763.99240378.947101.0115012.3766010.48670K562FMR1
SH3BGRENSG00000185437.9125.15510297.95960-1.251408.542507.55040K562FXR1
SH3BGRENSG00000185437.9559.33480355.638600.653205.294404.20310K562GPKOW
SH3BGRENSG00000185437.9277.33630197.174000.492102.458601.44720K562HNRNPA1
SH3BGRENSG00000185437.9403.68620236.444100.771605.874005.03550K562HNRNPC
SH3BGRENSG00000185437.9353.82890218.320500.696505.352604.09680K562HNRNPU
SH3BGRENSG00000185437.93149.38240442.201402.83220125.56570121.94600K562HSPD1
SH3BGRENSG00000185437.9932.244101209.67140-0.375802.268501.53090K562KIF1C
SH3BGRENSG00000185437.9462.39060303.629500.606702.514801.62750K562KRR1
SH3BGRENSG00000185437.9219.06880324.50840-0.566902.631401.73290K562MATR3
SH3BGRENSG00000185437.9740.877901355.12890-0.8711013.0745010.88930K562MBNL1
SH3BGRENSG00000185437.9204.16870132.406000.624702.577301.34440K562NONO
SH3BGRENSG00000185437.9450.99050301.216500.582205.391304.40060K562NSUN2
SH3BGRENSG00000185437.9426.89180317.733100.426002.655301.33700K562PCBP1
SH3BGRENSG00000185437.9202.47110289.32800-0.515002.416101.50460K562PCBP2
SH3BGRENSG00000185437.9681.81030463.360600.557104.363202.60450K562PNPT1
SH3BGRENSG00000185437.9510.72760370.316200.463702.928802.08160K562PPIG
SH3BGRENSG00000185437.9116.76230315.87890-1.4358013.6819012.26250K562PTBP1
SH3BGRENSG00000185437.9757.01410491.992100.621604.747203.68100K562PUF60
SH3BGRENSG00000185437.9659.97720512.736300.364102.371001.48100K562PUM2
SH3BGRENSG00000185437.9644.398601130.49230-0.810909.864608.88760K562PUS1
SH3BGRENSG00000185437.9515.560601101.38970-1.0951023.2100021.42240K562RBM15
SH3BGRENSG00000185437.9504.59780320.426400.655005.096902.92760K562RBM17
SH3BGRENSG00000185437.9212.82380302.99380-0.509602.679001.85270K562RBM22
SH3BGRENSG00000185437.9170.05770318.82820-0.906806.699604.91390K562NELFE
SH3BGRENSG00000185437.9245.57090562.56580-1.195904.425003.12100K562RPS3
SH3BGRENSG00000185437.984.96430188.96850-1.153204.904903.46430K562SAFB
SH3BGRENSG00000185437.9527.93170338.167300.642504.125002.92010K562SF3B1
SH3BGRENSG00000185437.9331.47910552.92600-0.738204.377602.14990K562SMN1
SH3BGRENSG00000185437.9113.43970183.35050-0.692702.669001.66870K562SRFBP1
SH3BGRENSG00000185437.9215.59250304.49970-0.498102.996202.02850K562SRPK2
SH3BGRENSG00000185437.9384.37760260.952800.558602.785301.61760K562SRSF7
SH3BGRENSG00000185437.9104.78040212.69380-1.021406.448005.18660K562SYNCRIP
SH3BGRENSG00000185437.9202.78420313.42720-0.628203.645402.82950K562TARDBP
SH3BGRENSG00000185437.9543.99200352.065900.627605.923104.74920K562U2AF2
SH3BGRENSG00000185437.9198.18280134.082900.563602.222201.31740K562UCHL5
SH3BGRENSG00000185437.9506.53990319.385600.665306.979605.89780K562UPF1
SH3BGRENSG00000185437.9523.21140270.913400.949507.036405.17080K562UTP3
SH3BGRENSG00000185437.9211.32650284.18230-0.427302.362401.57600K562WDR43
SH3BGRENSG00000185437.9205.97220136.507100.593402.514301.37880K562XRN2
SH3BGRENSG00000185437.9493.52870341.165200.532602.547801.72630K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SH3BGR is not available on ENCORE database.





4 RBPs can affect the splicing of SH3BGR :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESH3BGRENSG00000185437.9chr21+4087174840871841408470604084714140880924408809540.054000.008060.09987includedK562HNRNPC
A3SSSH3BGRENSG00000185437.9chr21+4088698440887134408870144088713440883606408837360.081000.004190.02473longerK562AQR
MXESH3BGRENSG00000185437.9chr21+40871748408718414088092440880954408470604084714140887014408874330.236000.000340.092921includedK562ILF3
MXESH3BGRENSG00000185437.9chr21+40871748408718414088092440880954408470604084714140887014408874330.236000.000080.005081includedK562DHX30

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SH3BGR is not avaliable on ENCORE database.