SERHL2

General Information

Gene Name       : SERHL2
Gene ID             : ENSG00000183569.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SERHL2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SERHL2ENSG00000183569.172.270.781.52ENCSR000AEF
HepG2SERHL2ENSG00000183569.171.540.741.14ENCSR985KAT
K562SERHL2ENSG00000183569.1723.2923.5123.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SERHL2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SERHL2 RNA is bound by 5 proteins.  







eCLIP assay for SERHL2 is not avaliable on ENCORE database.





5 proteins are bound to SERHL2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224296743442967512+3'-UTR,intron-Distal4.073683.02181K562PRPF8
chr224296721642967283+3'-UTR,intron-Proximal3.683423.94787K562AQR
chr224295618842956267+5'-UTR,CDS,intron-Distal,intron-Proximal3.897805.21950K562DDX24
chr224296796042968041+intron-Distal,intron-Proximal4.602615.54520K562GTF2F1
chr224296796642968032+intron-Distal,intron-Proximal3.458623.18246K562PRPF8
chr224296796642968040+intron-Distal,intron-Proximal3.316876.34474K562EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SERHL2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SERHL2 is not available on ENCORE database.

  • 64 RBPs can affect the levels of SERHL2.  








The Knockdown/knockout RNA-Seq assay for SERHL2 is not available on ENCORE database.





64 RBPs can affect the gene expression of SERHL2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SERHL2ENSG00000183569.1361.8060016.551101.900705.178603.76680HepG2AKAP8
SERHL2ENSG00000183569.1358.5025021.335601.455103.302902.44420HepG2ASCC1
SERHL2ENSG00000183569.1355.4194021.221901.384703.313302.57290HepG2AUH
SERHL2ENSG00000183569.138.0167025.60740-1.675501.966201.32680HepG2CNOT7
SERHL2ENSG00000183569.1399.2138021.231102.224308.802907.76530HepG2DDX6
SERHL2ENSG00000183569.1359.5268020.395101.545203.509402.84620HepG2EIF2S1
SERHL2ENSG00000183569.131.9314021.95160-3.506603.591202.81230HepG2EIF4B
SERHL2ENSG00000183569.1358.6831021.097501.475803.532802.78570HepG2G3BP1
SERHL2ENSG00000183569.1366.2395019.736601.746704.805703.76030HepG2MSI2
SERHL2ENSG00000183569.1354.2412023.423501.211302.301001.72100HepG2NCBP2
SERHL2ENSG00000183569.1394.5734023.416702.013807.329805.83910HepG2PABPC1
SERHL2ENSG00000183569.1374.6963014.675502.347507.717506.75430HepG2QKI
SERHL2ENSG00000183569.1341.6272015.088001.464002.617102.08860HepG2NELFE
SERHL2ENSG00000183569.1328.0602011.988101.226801.818101.35330HepG2SRSF9
SERHL2ENSG00000183569.1353.3429019.969701.417403.401202.84550HepG2SSB
SERHL2ENSG00000183569.1343.3425020.879601.053601.909301.33320HepG2SUPV3L1
SERHL2ENSG00000183569.1364.8981016.243901.998206.276405.57840HepG2TIAL1
SERHL2ENSG00000183569.1325.788807.881701.710102.413001.75340HepG2UPF1
SERHL2ENSG00000183569.13641.28710359.794100.8337011.6465010.57640K562AGGF1
SERHL2ENSG00000183569.13639.68570374.384800.772708.060806.88960K562AKAP8L
SERHL2ENSG00000183569.13356.13610673.03670-0.918308.429307.49540K562AQR
SERHL2ENSG00000183569.13501.55170392.825000.352402.390801.54630K562ATP5C1
SERHL2ENSG00000183569.13350.32100475.07230-0.439503.200201.76990K562BCCIP
SERHL2ENSG00000183569.13199.35650280.55700-0.492902.387501.42260K562CCAR1
SERHL2ENSG00000183569.13611.50560451.238400.438403.677502.28190K562DDX21
SERHL2ENSG00000183569.13275.29810406.73870-0.563104.023302.73640K562DDX3X
SERHL2ENSG00000183569.13221.69970502.57600-1.180708.883807.79840K562DDX47
SERHL2ENSG00000183569.13178.47470301.69270-0.757404.716402.94230K562DNAJC21
SERHL2ENSG00000183569.13212.08720372.45260-0.812405.861504.49990K562EFTUD2
SERHL2ENSG00000183569.13183.48290419.67090-1.1936015.0545013.58020K562EIF2S2
SERHL2ENSG00000183569.1388.42870285.37400-1.6903010.558108.56820K562EIF3A
SERHL2ENSG00000183569.13137.84840398.74370-1.5324015.6797013.06940K562EIF3D
SERHL2ENSG00000183569.13209.35110424.92750-1.0213010.261008.66190K562EIF4A3
SERHL2ENSG00000183569.13540.00110790.12380-0.549102.468201.57650K562EIF4G2
SERHL2ENSG00000183569.13183.26630362.61820-0.984507.479005.47820K562FKBP4
SERHL2ENSG00000183569.13212.46600441.90430-1.0565012.6692011.47000K562FXR1
SERHL2ENSG00000183569.13114.54390288.95560-1.334909.573508.10330K562G3BP2
SERHL2ENSG00000183569.13280.28600190.195800.559302.115401.41740K562GPKOW
SERHL2ENSG00000183569.13271.98760372.68000-0.454402.478601.40890K562HNRNPF
SERHL2ENSG00000183569.13525.54400655.78570-0.319402.296301.48060K562HNRNPU
SERHL2ENSG00000183569.13623.88510397.306200.650905.443004.20050K562KIF1C
SERHL2ENSG00000183569.13232.81600411.79130-0.822707.477306.07010K562MAGOH
SERHL2ENSG00000183569.13301.29150436.80170-0.535804.352403.35820K562MTPAP
SERHL2ENSG00000183569.13472.15280311.973000.597703.005002.07870K562NAA15
SERHL2ENSG00000183569.13272.73180424.33480-0.637704.940403.29400K562NCBP2
SERHL2ENSG00000183569.13642.75400485.352800.405103.890703.02370K562NSUN2
SERHL2ENSG00000183569.13261.72150402.62600-0.621404.732302.92610K562PCBP1
SERHL2ENSG00000183569.13245.99150366.35320-0.574603.302402.23340K562PCBP2
SERHL2ENSG00000183569.13130.21320362.44030-1.4769014.1109012.40610K562PRPF8
SERHL2ENSG00000183569.13237.62360400.09710-0.751706.551305.56340K562PTBP1
SERHL2ENSG00000183569.13557.15980862.02170-0.629602.941002.09880K562PUF60
SERHL2ENSG00000183569.13626.79870371.267300.755406.846606.03670K562PUS1
SERHL2ENSG00000183569.13140.58610275.70100-0.971704.267702.44740K562RAVER1
SERHL2ENSG00000183569.13585.46010361.760400.694407.424506.48470K562RBM15
SERHL2ENSG00000183569.13211.25330383.52830-0.860407.264005.82020K562RBM22
SERHL2ENSG00000183569.13147.44460369.15700-1.3241011.034609.37460K562RPS19
SERHL2ENSG00000183569.13182.38710278.10010-0.608602.575901.61230K562RPS3
SERHL2ENSG00000183569.13161.35350300.47450-0.897007.143705.72820K562SF3B4
SERHL2ENSG00000183569.13379.05630490.61860-0.372202.728701.79800K562SRPK2
SERHL2ENSG00000183569.13237.33150392.25260-0.724905.601304.60120K562SRSF1
SERHL2ENSG00000183569.13198.81160312.30730-0.651604.287603.25900K562SYNCRIP
SERHL2ENSG00000183569.13158.71580283.64500-0.837603.504901.78120K562TAF15
SERHL2ENSG00000183569.13255.69610396.93340-0.634504.243103.36070K562TARDBP
SERHL2ENSG00000183569.13162.11600280.10480-0.788904.343802.90860K562U2AF1
SERHL2ENSG00000183569.13120.26430289.28310-1.2663011.8579010.17670K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SERHL2 is not available on ENCORE database.





11 RBPs can affect the splicing of SERHL2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESERHL2ENSG00000183569.13chr22+429623094296234442956191429562714296712642967209-0.418000.001120.02300excludedK562SF3B4
SESERHL2ENSG00000183569.13chr22+4296230942962344429561914295627142967126429672090.209000.000190.03742includedK562DROSHA
SESERHL2ENSG00000183569.13chr22+429593944295948742956191429562714296230942962344-0.234000.000110.03258excludedK562SBDS
SESERHL2ENSG00000183569.13chr22+429623094296234442956191429562714296712642967209-0.260000.000360.01699excludedK562HNRNPU
SESERHL2ENSG00000183569.13chr22+429610294296123542956191429562714296230942962344-0.091000.007510.09472excludedK562HNRNPC
A5SSSERHL2ENSG00000183569.13chr22+429671264296790742967126429672094296844142968535-0.225000.000020.01120shorterK562EIF3G
A5SSSERHL2ENSG00000183569.13chr22+4296712642967907429671264296720942968441429685350.209000.000510.04274longerK562HNRNPC
A5SSSERHL2ENSG00000183569.13chr22+429671264296790742967126429672094296844142968535-0.273000.000280.03766shorterK562PTBP1
A5SSSERHL2ENSG00000183569.13chr22+429671264296790742967126429672094296844142968535-0.381000.000050.00763shorterK562FXR1
A5SSSERHL2ENSG00000183569.13chr22+4296712642967907429671264296720942968441429685350.310000.000010.00304longerK562HNRNPU
A5SSSERHL2ENSG00000183569.13chr22+429671264296790742967126429672094296844142968535-0.369000.000000.00002shorterK562SRSF1
A5SSSERHL2ENSG00000183569.13chr22+4296712642967907429671264296720942968441429685350.239000.000510.04953longerK562AKAP8L
MXESERHL2ENSG00000183569.13chr22+4295939442959475429623094296234442956191429562714296712642967209-0.102000.000650.092062includedK562PUM2
MXESERHL2ENSG00000183569.13chr22+42959394429594874296102942961235429561914295627142962309429623440.477000.004970.069391includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SERHL2 is not avaliable on ENCORE database.