SAMD4B

General Information

Gene Name       : SAMD4B
Gene ID             : ENSG00000179134.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: SAMD4B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SAMD4BENSG00000179134.158.9015.6712.29ENCSR000AEF
HepG2SAMD4BENSG00000179134.1550.6424.7337.69ENCSR985KAT
K562SAMD4BENSG00000179134.1576.0554.9965.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SAMD4B is not avaliable on ENCORE database.



Proteins bound to RNA
  • SAMD4B RNA is bound by 36 proteins.  







eCLIP assay for SAMD4B is not avaliable on ENCORE database.





36 proteins are bound to SAMD4B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193987443839874516+3'-UTR,intron-Distal3.294557.99516K562IGF2BP2
chr193987441239874503+3'-UTR,intron-Distal5.2674713.08710K562PCBP1
chr193987488039874942+3'-UTR,intron-Distal3.458056.51588K562IGF2BP2
chr193987462139874734+3'-UTR,intron-Distal3.9817912.96916HepG2XPO5
chr193987537139875434+3'-UTR,intron-Distal4.5680918.86493K562UPF1
chr193987529439875336+3'-UTR,intron-Distal4.724124.92659K562FAM120A
chr193987443839874520+3'-UTR,intron-Distal4.684515.86125HepG2HNRNPK
chr193987394739873994+3'-UTR,CDS,intron-Distal,intron-Proximal5.300274.55547K562PCBP1
chr193987430839874389+3'-UTR,CDS,intron-Distal,intron-Proximal3.6226418.23563K562UPF1
chr193987442739874525+3'-UTR,intron-Distal4.1405215.01292HepG2PCBP2
chr193987535839875404+3'-UTR,intron-Distal3.636046.56370K562FAM120A
chr193987517139875252+3'-UTR,intron-Distal3.009616.14915K562HNRNPK
chr193987556539875611+3'-UTR,intron-Distal3.120733.84285K562DDX55
chr193987443939874519+3'-UTR,intron-Distal3.130924.38724K562HNRNPK
chr193987496839875057+3'-UTR,intron-Distal3.1213711.73002K562UPF1
chr193987484439874884+3'-UTR,intron-Distal3.249548.81237K562UPF1
chr193987517139875223+3'-UTR,intron-Distal3.5966316.55993K562UPF1
chr193987469839874772+3'-UTR,intron-Distal4.0778717.94332K562UPF1
chr193987612939876231+3'-UTR,CDS,intron-Proximal4.5634014.71242K562IGF2BP2
chr193987431939874400+3'-UTR,CDS,intron-Distal,intron-Proximal3.7440511.84521K562TIA1
chr193984731539847375+3'-UTR,5'-UTR,intron-Proximal3.762774.77518HepG2U2AF2
chr193987445639874523+3'-UTR,intron-Distal3.957643.66583K562AKAP1
chr193984732339847392+3'-UTR,5'-UTR,intron-Proximal3.441035.38969K562U2AF2
chr193987497839875022+3'-UTR,intron-Distal3.543645.26527K562IGF2BP2
chr193987516939875207+3'-UTR,intron-Distal4.462299.35789HepG2PCBP2
chr193987625839876278+3'-UTR5.171148.05720K562UPF1
chr193987528839875371+3'-UTR,intron-Distal4.4604120.58173K562UPF1
chr193987522339875288+3'-UTR,intron-Distal3.8304216.79393K562UPF1
chr193987618239876238+3'-UTR,CDS,intron-Proximal4.587498.19301K562PABPC4
chr193987449239874499+3'-UTR,intron-Distal3.167934.26467K562UPF1
chr193987500439875027+3'-UTR,intron-Distal3.139153.68882K562FAM120A
chr193987484439874905+3'-UTR,intron-Distal3.289735.92362K562IGF2BP1
chr193987429339874319+3'-UTR,intron-Distal,intron-Proximal4.293824.73315K562TIA1
chr193984740039847462+3'-UTR,5'-UTR3.600893.05161HepG2PPIG
chr193987442639874515+3'-UTR,intron-Distal3.599626.64741HepG2DDX59
chr193983312039833216+5'-UTR3.720667.42472HepG2NCBP2
chr193983311939833196+5'-UTR4.210126.36430K562GTF2F1
chr193983320339833287+5'-UTR,intron-Proximal3.924625.09764HepG2NKRF
chr193983321339833264+5'-UTR,intron-Proximal3.955286.65114HepG2PRPF8
chr193983311739833209+5'-UTR3.222974.46248HepG2FAM120A
chr193983312239833222+5'-UTR,intron-Proximal4.5599913.16393HepG2DDX3X
chr193983312139833176+5'-UTR4.614213.85108HepG2GTF2F1
chr193983312239833202+5'-UTR3.526357.63367K562DROSHA
chr193984464139844707+5'-UTR,intron-Distal,intron-Proximal5.322957.95724HepG2PPIG
chr193983312939833168+5'-UTR4.589164.73643HepG2DDX59
chr193983321339833284+5'-UTR,intron-Proximal3.408843.77433K562XRN2
chr193983311539833202+5'-UTR3.9479614.17782K562GEMIN5
chr193983312339833177+5'-UTR3.085224.86293K562NCBP2
chr193983311739833191+5'-UTR5.039106.82550K562XRN2
chr193986807839868174+CDS,intron-Distal,intron-Proximal4.457163.96990K562BUD13
chr193986652739866577+CDS,intron-Distal,intron-Proximal4.708594.13847K562AQR
chr193987072339870767+CDS,intron-Distal,intron-Proximal3.973855.47926K562AQR
chr193984763639847781+CDS,intron-Proximal3.9545414.09734HepG2PRPF8
chr193987617939876220+CDS,intron-Proximal3.571909.87397K562UPF1
chr193986711339867188+CDS,intron-Proximal3.270004.77136HepG2PPIG
chr193986640239866450+CDS,intron-Distal3.4989310.74873K562YBX3
chr193986836339868457+CDS,intron-Distal3.692755.24452HepG2PPIG
chr193987617039876226+CDS,intron-Proximal3.392035.85078HepG2HNRNPK
chr193986626539866328+CDS,intron-Distal,intron-Proximal5.195695.90023K562SF3B4
chr193986640039866455+CDS,intron-Distal3.318703.55142K562METAP2
chr193984764539847734+CDS,intron-Proximal3.900533.32022K562UCHL5
chr193986044139860512+CDS5.142106.89039K562RBM15
chr193987613539876228+CDS,intron-Proximal4.9496421.50257HepG2PCBP2
chr193986716239867230+CDS,intron-Proximal5.083455.01842HepG2PRPF8
chr193984764339847705+CDS4.354964.08604HepG2PPIG
chr193986076339860784+CDS,intron-Proximal4.162636.01372K562AQR
chr193986034239860414+CDS3.410254.25142K562BUD13
chr193986074439860817+CDS,intron-Proximal4.481327.46483HepG2PRPF8
chr193987556739875647+intron-Distal4.511969.54233K562PABPC4
chr193987569339875751+intron-Distal3.7528911.75503K562UPF1
chr193987142639871474+intron-Distal,intron-Proximal4.021564.00320K562AQR
chr193987600539876040+intron-Distal3.435854.78882K562IGF2BP2
chr193987600439876058+intron-Distal4.370274.38829HepG2NKRF
chr193983380139833853+intron-Distal4.799686.76619K562HNRNPK
chr193987590639875973+intron-Distal3.4575913.10996K562UPF1
chr193983394439834019+intron-Distal4.5204110.98479HepG2DDX59
chr193987581939875879+intron-Distal4.813866.92189HepG2PCBP2
chr193985913239859242+intron-Distal3.492344.09735K562ILF3
chr193983332239833472+intron-Distal4.153956.87708HepG2EFTUD2
chr193987561239875636+intron-Distal3.196044.85736K562IGF2BP2
chr193987610939876153+intron-Distal,intron-Proximal4.282004.53890K562PCBP1
chr193986765639867755+intron-Distal4.289863.42734K562PTBP1
chr193983401139834151+intron-Distal4.5118415.20462K562HNRNPK
chr193983602139836098+intron-Distal3.747005.42643HepG2MATR3
chr193987604039876078+intron-Distal4.621386.39896K562IGF2BP2
chr193987584239875935+intron-Distal3.587085.33443K562IGF2BP2
chr193983647939836574+intron-Distal3.554716.19545HepG2PCBP2
chr193983392239834054+intron-Distal5.4009910.87872HepG2HNRNPK
chr193987558939875653+intron-Distal4.335916.29269K562DDX6
chr193983415139834263+intron-Distal4.4673313.76641K562HNRNPK
chr193987592939875977+intron-Distal4.882034.34233HepG2XRN2
chr193987558939875612+intron-Distal3.380344.30970K562IGF2BP2
chr193987566739875726+intron-Distal3.157733.16890HepG2XRN2
chr193987558339875665+intron-Distal3.8242514.77879K562UPF1
chr193983413539834210+intron-Distal4.9550610.34615HepG2DDX59
chr193983371239833884+intron-Distal5.9038515.40047HepG2HNRNPK
chr193983611339836164+intron-Distal3.622807.16876K562PTBP1
chr193983610639836192+intron-Distal3.204555.37771HepG2PTBP1
chr193987582739875899+intron-Distal4.259094.10192HepG2HNRNPK
chr193983527439835349+intron-Distal4.898037.02715K562MATR3
chr193983613139836185+intron-Distal4.413938.97098K562MATR3
chr193983621739836242+intron-Distal3.820743.33944K562MATR3
chr193983418039834243+intron-Distal4.919367.19722HepG2HNRNPK
chr193983365239833712+intron-Distal4.865807.98391HepG2HNRNPK
chr193983333539833397+intron-Distal3.651553.19036K562XRN2
chr193987585739875904+intron-Distal4.240815.53017K562AKAP1
chr193986743139867495+intron-Distal,intron-Proximal5.243367.23718K562AQR
chr193983613939836198+intron-Distal5.139246.43853HepG2MATR3
chr193987582739875889+intron-Distal4.003867.57201K562HNRNPK
chr193983653339836583+intron-Distal3.063604.41351K562PTBP1
chr193987558939875696+intron-Distal3.750127.72891K562AKAP1
chr193987599939876064+intron-Distal4.6986616.55244K562UPF1
chr193983652239836576+intron-Distal3.261103.18966K562MATR3
chr193987581939875906+intron-Distal3.9238821.37170K562UPF1
chr193983446939834526+intron-Distal3.041445.61044K562HNRNPK
chr193987565639875751+intron-Distal4.627528.74842K562PCBP1
chr193983405439834093+intron-Distal3.952945.10672HepG2DDX59
chr193984007639840146+intron-Distal3.765155.38389HepG2PCBP2
chr193983479839834881+intron-Distal4.180686.90820K562HNRNPK
chr193983366139833755+intron-Distal5.6033711.72488K562HNRNPK
chr193983602639836095+intron-Distal3.312627.89798K562PTBP1
chr193983552439835643+intron-Distal3.315365.29552K562MATR3
chr193983333639833417+intron-Distal4.074896.63111HepG2XRN2
chr193983601339836097+intron-Distal4.7327610.68394K562MATR3
chr193983602639836099+intron-Distal4.8333413.90744HepG2PTBP1
chr193983388339833991+intron-Distal6.0118418.05995K562HNRNPK
chr193983406039834136+intron-Distal4.847537.87489HepG2HNRNPK
chr193983524039835369+intron-Distal3.875303.84494HepG2QKI
chr193983355239833610+intron-Distal3.348563.14359HepG2HNRNPK
chr193987617639876214+intron-Proximal5.300274.55547K562PCBP1
chr193986078439860807+intron-Proximal5.162636.83960K562AQR
chr193987612539876219+intron-Proximal3.483416.74466HepG2DDX59
chr193987614339876211+intron-Proximal3.107424.81867K562AKAP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SAMD4B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SAMD4B is not available on ENCORE database.

  • 79 RBPs can affect the levels of SAMD4B.  








The Knockdown/knockout RNA-Seq assay for SAMD4B is not available on ENCORE database.





79 RBPs can affect the gene expression of SAMD4B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SAMD4BENSG00000179134.101258.23760886.853000.504502.279301.37350HepG2ADAR
SAMD4BENSG00000179134.101507.645101170.963600.364502.139601.66560HepG2AKAP1
SAMD4BENSG00000179134.102092.707901412.502700.567007.091706.18530HepG2BOP1
SAMD4BENSG00000179134.10959.055201287.39350-0.424804.298503.36270HepG2CALR
SAMD4BENSG00000179134.101039.977701296.74140-0.318302.247801.61940HepG2CPSF6
SAMD4BENSG00000179134.101684.140101179.007800.514308.889407.86200HepG2CELF1
SAMD4BENSG00000179134.101530.756501267.655900.272003.623002.79490HepG2DAZAP1
SAMD4BENSG00000179134.101492.165201284.300900.216302.414801.63010HepG2DDX19B
SAMD4BENSG00000179134.10705.381801121.56390-0.669006.401005.48940HepG2DDX3X
SAMD4BENSG00000179134.101237.14890878.643200.493602.761601.98910HepG2DDX55
SAMD4BENSG00000179134.101255.83890885.146200.504609.421108.30380HepG2DNAJC2
SAMD4BENSG00000179134.101359.91080926.175000.554104.929804.15050HepG2EIF2S1
SAMD4BENSG00000179134.101820.89760996.690400.869308.332507.17160HepG2EIF4B
SAMD4BENSG00000179134.102497.078302067.161700.272503.316102.66680HepG2ETF1
SAMD4BENSG00000179134.101755.636101032.999000.765109.466908.25680HepG2FXR1
SAMD4BENSG00000179134.101049.87530774.234400.439302.509101.66070HepG2GEMIN5
SAMD4BENSG00000179134.101212.56910901.563000.427503.850803.10730HepG2HNRNPA1
SAMD4BENSG00000179134.101281.827101002.830200.354002.501701.83940HepG2HNRNPC
SAMD4BENSG00000179134.101388.549101154.717200.265903.465102.71880HepG2HNRNPL
SAMD4BENSG00000179134.101201.53310996.199500.270302.799602.18860HepG2HNRNPU
SAMD4BENSG00000179134.101345.25680973.725800.466203.763802.98610HepG2IGF2BP2
SAMD4BENSG00000179134.101180.502201017.583400.214202.400501.71140HepG2ILF2
SAMD4BENSG00000179134.101701.838301039.072600.711707.216906.23340HepG2MATR3
SAMD4BENSG00000179134.101539.420901257.008600.292302.320901.62310HepG2NOL12
SAMD4BENSG00000179134.10767.530201243.85570-0.696507.901406.68250HepG2NSUN2
SAMD4BENSG00000179134.101291.42420833.583500.631503.507602.50060HepG2PABPC1
SAMD4BENSG00000179134.101589.242801116.435300.509308.612407.75740HepG2PTBP1
SAMD4BENSG00000179134.101856.942701273.814400.5437014.3152013.18730HepG2PUM1
SAMD4BENSG00000179134.102144.436001272.870500.7524013.1601011.76350HepG2PUM2
SAMD4BENSG00000179134.101865.151701414.418400.399007.056706.15010HepG2PUS1
SAMD4BENSG00000179134.101504.69710957.735400.651703.672802.86370HepG2RAVER1
SAMD4BENSG00000179134.101664.144901242.443400.421506.456905.68940HepG2NELFE
SAMD4BENSG00000179134.101313.95580846.338100.634505.428504.60020HepG2RPS19
SAMD4BENSG00000179134.101180.00270908.172400.377702.439701.68480HepG2RPS2
SAMD4BENSG00000179134.101290.49080556.558201.213204.313302.53720HepG2SF1
SAMD4BENSG00000179134.101546.662701162.262800.412106.139705.31700HepG2SF3B4
SAMD4BENSG00000179134.101537.31220540.606401.507705.810303.56830HepG2SFPQ
SAMD4BENSG00000179134.101290.731301034.564500.319104.346803.57260HepG2SMN1
SAMD4BENSG00000179134.101049.38000497.943401.075403.753102.17260HepG2SNRNP200
SAMD4BENSG00000179134.10582.294101544.90300-1.4077016.6714014.78370HepG2SNRNP70
SAMD4BENSG00000179134.102661.886301951.386400.447809.546308.76820HepG2SRFBP1
SAMD4BENSG00000179134.10556.99180874.56730-0.650904.007303.21600HepG2SUPV3L1
SAMD4BENSG00000179134.10671.667601090.56290-0.6993010.882109.88680HepG2TAF15
SAMD4BENSG00000179134.10615.75250961.96980-0.643604.176702.39640HepG2TRA2A
SAMD4BENSG00000179134.101323.89390976.649000.438806.639605.83300HepG2TRIM56
SAMD4BENSG00000179134.101599.516701172.329100.448205.118203.89140HepG2TUFM
SAMD4BENSG00000179134.101348.619301826.79760-0.437804.041203.28780HepG2U2AF1
SAMD4BENSG00000179134.101234.68610578.499001.093703.629402.49570HepG2U2AF2
SAMD4BENSG00000179134.102073.151501789.218100.212402.286201.73040HepG2UTP3
SAMD4BENSG00000179134.103419.402002803.436300.286404.622303.92210K562AGGF1
SAMD4BENSG00000179134.102206.119901671.063900.400603.517102.53380K562BOP1
SAMD4BENSG00000179134.102275.542901645.215900.467803.064601.94590K562CCAR1
SAMD4BENSG00000179134.102201.378503126.59070-0.5062011.262909.04360K562CPEB4
SAMD4BENSG00000179134.101065.377301360.73970-0.353003.275202.13250K562DDX3X
SAMD4BENSG00000179134.101643.774301285.841100.354202.564801.68910K562EFTUD2
SAMD4BENSG00000179134.102469.492302076.829300.249702.732802.01750K562EIF2S2
SAMD4BENSG00000179134.102490.563601673.394100.573603.609602.44470K562EIF3A
SAMD4BENSG00000179134.101170.97960800.272800.549107.528906.22560K562EIF3G
SAMD4BENSG00000179134.101576.992901280.201700.300703.072601.83720K562EIF4B
SAMD4BENSG00000179134.104146.007903404.722000.284104.038902.90650K562EIF4G2
SAMD4BENSG00000179134.101617.155602305.25190-0.511506.116204.82270K562FIP1L1
SAMD4BENSG00000179134.101942.031701478.403800.393405.616704.79740K562FXR1
SAMD4BENSG00000179134.10437.41050757.32710-0.791906.290605.12570K562G3BP2
SAMD4BENSG00000179134.102024.140802767.32160-0.451205.779904.68300K562GRSF1
SAMD4BENSG00000179134.102217.752601688.966900.392904.271003.54570K562HNRNPC
SAMD4BENSG00000179134.101952.830501508.477500.372403.647102.31810K562HNRNPF
SAMD4BENSG00000179134.102393.344803125.47010-0.385003.809802.88030K562HSPD1
SAMD4BENSG00000179134.101608.481701115.921000.527403.551602.33340K562IGF2BP2
SAMD4BENSG00000179134.102515.527403095.78060-0.299402.419001.65490K562KIF1C
SAMD4BENSG00000179134.101442.225501172.107500.299102.404001.61770K562MAGOH
SAMD4BENSG00000179134.101582.476501169.626000.436004.823303.56850K562MATR3
SAMD4BENSG00000179134.104283.272802363.635000.857607.250505.27390K562PABPC1
SAMD4BENSG00000179134.102135.333902616.87800-0.293402.334601.58270K562PPIG
SAMD4BENSG00000179134.101623.414601138.826800.511403.282802.56560K562PTBP1
SAMD4BENSG00000179134.102397.763502892.98010-0.270901.795501.33960K562PUS1
SAMD4BENSG00000179134.102285.944302818.75900-0.302303.599602.93720K562RBM15
SAMD4BENSG00000179134.101432.256201091.626500.391702.860002.00270K562RBM22
SAMD4BENSG00000179134.101806.031501381.998600.386004.242703.01220K562RCC2
SAMD4BENSG00000179134.101851.533301398.375400.404903.247602.15430K562RPS3
SAMD4BENSG00000179134.102509.420801395.123800.846903.417002.04310K562SF1
SAMD4BENSG00000179134.102345.810502801.97740-0.256403.186602.31330K562SF3A3
SAMD4BENSG00000179134.101090.60200787.205500.470205.187403.99610K562SF3B4
SAMD4BENSG00000179134.102964.793501700.341500.802003.737402.13520K562SFPQ
SAMD4BENSG00000179134.101544.119501116.506400.467704.649103.73650K562SRSF1
SAMD4BENSG00000179134.101777.411901349.844500.396904.046302.73900K562SRSF4
SAMD4BENSG00000179134.102286.810503024.67650-0.403403.987502.33480K562SSRP1
SAMD4BENSG00000179134.102569.549303241.21650-0.335004.175102.35260K562SUCLG1
SAMD4BENSG00000179134.101876.346701129.812500.731706.251105.14950K562TARDBP
SAMD4BENSG00000179134.101597.076501089.875000.551207.349905.91090K562TIA1
SAMD4BENSG00000179134.101938.980901456.561600.412603.325002.29250K562TIAL1
SAMD4BENSG00000179134.102136.517401547.749400.465005.212703.81370K562TRIM56
SAMD4BENSG00000179134.103480.312703011.005000.208902.460201.78190K562UPF1
SAMD4BENSG00000179134.101482.792602576.43030-0.7971016.2980014.17060K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SAMD4B is not available on ENCORE database.





6 RBPs can affect the splicing of SAMD4B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESAMD4BENSG00000179134.10chr19+398446453984470639833035398332163984732839847729-0.359000.000160.00742excludedK562AKAP8L
SESAMD4BENSG00000179134.10chr19+3984464539844706398330353983321639847328398477290.341000.005390.09322includedHepG2SRSF1
SESAMD4BENSG00000179134.10chr19+398389273983902939833107398332163984464539844706-0.268000.000690.02833excludedK562HNRNPU
SESAMD4BENSG00000179134.10chr19+398446453984470639833035398332163984732839847729-0.376000.000010.00065excludedK562RBM15
SESAMD4BENSG00000179134.10chr19+398446453984470639833035398332163984732839847729-0.323000.000010.00040excludedK562AGGF1
A5SSSAMD4BENSG00000179134.10chr19+3987060539870774398706053987072439871226398714250.114000.000860.01638longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SAMD4B is not avaliable on ENCORE database.