RGP1

General Information

Gene Name       : RGP1
Gene ID             : ENSG00000107185.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RGP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGP1ENSG00000107185.95.025.995.50ENCSR000AEF
HepG2RGP1ENSG00000107185.99.728.409.06ENCSR985KAT
K562RGP1ENSG00000107185.97.057.187.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RGP1 RNA is bound by 8 proteins.  







eCLIP assay for RGP1 is not avaliable on ENCORE database.





8 proteins are bound to RGP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr93575690335757069+3'-UTR3.319307.69278HepG2FAM120A
chr93575601835756124+3'-UTR3.226185.93547HepG2PTBP1
chr93575769035757764+3'-UTR3.284404.20475K562UPF1
chr93575737435757443+3'-UTR4.421645.59467HepG2PRPF4
chr93575693635757062+3'-UTR3.043266.85168HepG2PRPF4
chr93575689735757054+3'-UTR4.6253011.80912HepG2GRSF1
chr93575691635757052+3'-UTR3.5121115.63571HepG2RBFOX2
chr93575695735757029+3'-UTR3.644934.76898K562CSTF2T
chr93575674635756862+3'-UTR4.394778.49960HepG2GRSF1
chr93575623335756278+3'-UTR3.004143.91588K562UPF1
chr93575696335757057+3'-UTR4.489744.80493K562RBFOX2
chr93575458135754641+3'-UTR3.671146.84689K562UPF1
chr93575722735757300+3'-UTR3.417376.39220HepG2RBFOX2
chr93575673535756835+3'-UTR4.5805617.82334HepG2RBFOX2
chr93575092235750986+CDS3.664073.19539K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RGP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGP1 is not available on ENCORE database.

  • 59 RBPs can affect the levels of RGP1.  








The Knockdown/knockout RNA-Seq assay for RGP1 is not available on ENCORE database.





59 RBPs can affect the gene expression of RGP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGP1ENSG00000107185.81485.510901899.05230-0.354302.165101.68810HepG2AKAP1
RGP1ENSG00000107185.81048.057101571.32140-0.584305.696704.59250HepG2ASCC1
RGP1ENSG00000107185.82332.111401967.986800.244803.023902.31120HepG2AUH
RGP1ENSG00000107185.81866.410101121.544700.7347010.839909.75780HepG2BOP1
RGP1ENSG00000107185.81732.019801388.554000.318803.904403.16450HepG2CELF1
RGP1ENSG00000107185.81949.437401492.994900.384707.352606.22830HepG2DAZAP1
RGP1ENSG00000107185.81386.417901015.688000.448802.674701.91150HepG2DDX55
RGP1ENSG00000107185.81402.167201175.659900.254102.373101.71590HepG2DNAJC21
RGP1ENSG00000107185.8872.582301110.97650-0.348502.188801.36730HepG2EEF2
RGP1ENSG00000107185.8950.965201616.39660-0.765306.518705.49370HepG2EIF4B
RGP1ENSG00000107185.81187.013501481.97510-0.320202.751301.91890HepG2EWSR1
RGP1ENSG00000107185.81532.650101167.102900.393002.691602.05870HepG2GPKOW
RGP1ENSG00000107185.8933.388101548.82220-0.730605.731104.11870HepG2GRSF1
RGP1ENSG00000107185.8942.996101186.92310-0.331902.465901.85340HepG2HNRNPA1
RGP1ENSG00000107185.81136.364101573.28670-0.469404.383403.52060HepG2HNRNPK
RGP1ENSG00000107185.81092.401901311.50610-0.263702.787402.17740HepG2HNRNPU
RGP1ENSG00000107185.8751.450601048.23930-0.480204.328302.54580HepG2NIP7
RGP1ENSG00000107185.81233.661401536.00410-0.316201.969901.35230HepG2PABPC4
RGP1ENSG00000107185.81105.526301298.16350-0.231702.134101.38250HepG2PARN
RGP1ENSG00000107185.81279.431001547.86910-0.274802.136301.53800HepG2RBM25
RGP1ENSG00000107185.8929.998701397.95210-0.588006.388004.87360HepG2RBM27
RGP1ENSG00000107185.8724.528401135.19970-0.647806.418004.80430HepG2RCC2
RGP1ENSG00000107185.81522.287001752.58880-0.203201.868401.40460HepG2NELFE
RGP1ENSG00000107185.82161.025501561.854700.468404.968404.08840HepG2RPLP0
RGP1ENSG00000107185.81136.332301680.51310-0.564504.068303.09700HepG2RPS3A
RGP1ENSG00000107185.81047.398901596.09790-0.607703.737201.94140HepG2SBDS
RGP1ENSG00000107185.81282.061001698.83500-0.406102.046601.46540HepG2SF3A3
RGP1ENSG00000107185.81095.261001362.02790-0.314504.445703.66460HepG2SMN1
RGP1ENSG00000107185.82669.908902133.026300.323805.506204.86600HepG2SRFBP1
RGP1ENSG00000107185.81502.475301711.33270-0.187801.731301.33280HepG2SRSF1
RGP1ENSG00000107185.81661.315301395.378100.251602.868902.23160HepG2SRSF5
RGP1ENSG00000107185.81647.995801424.438700.210202.065101.45440HepG2SRSF7
RGP1ENSG00000107185.81659.396801392.282200.253103.123502.54440HepG2SRSF9
RGP1ENSG00000107185.81556.632901851.97840-0.250602.992402.46370HepG2SSB
RGP1ENSG00000107185.81925.977601586.915600.279303.973903.25240HepG2SUCLG1
RGP1ENSG00000107185.8456.36560597.19730-0.388002.406001.69730HepG2UCHL5
RGP1ENSG00000107185.81053.760701505.27120-0.514503.254102.05420HepG2XPO5
RGP1ENSG00000107185.8759.72240995.25020-0.389602.890402.14930HepG2XRN2
RGP1ENSG00000107185.82183.881401656.979700.398208.819707.98510HepG2ZNF622
RGP1ENSG00000107185.8957.126501190.74170-0.315103.392702.77670K562AGGF1
RGP1ENSG00000107185.8967.889401308.38900-0.434904.101902.85420K562AKAP8
RGP1ENSG00000107185.8981.441501239.00690-0.336202.624001.98700K562AKAP8L
RGP1ENSG00000107185.81059.075901299.99040-0.295702.884301.95320K562ATP5C1
RGP1ENSG00000107185.8872.46770623.049700.485703.631802.63290K562BOP1
RGP1ENSG00000107185.81422.024401130.517000.330903.913003.15700K562DDX47
RGP1ENSG00000107185.81036.475801333.34680-0.363404.218903.10510K562DKC1
RGP1ENSG00000107185.81018.81070839.134500.279802.282501.62000K562EIF2S2
RGP1ENSG00000107185.8891.84660654.699100.445903.723602.77620K562EIF4A3
RGP1ENSG00000107185.8801.48940632.450100.341602.193601.48500K562GPKOW
RGP1ENSG00000107185.8656.520101118.09190-0.768108.057506.75620K562GRSF1
RGP1ENSG00000107185.8883.03890611.322700.530405.045604.26220K562HNRNPC
RGP1ENSG00000107185.8906.360801314.94440-0.536805.601004.33380K562KIF1C
RGP1ENSG00000107185.81019.876501258.68610-0.303502.245901.30980K562MAK16
RGP1ENSG00000107185.81162.835401473.06310-0.341203.212902.22070K562MBNL1
RGP1ENSG00000107185.8808.30060617.352600.388702.929302.02660K562METAP2
RGP1ENSG00000107185.8645.72890964.10760-0.578305.308304.21260K562MTPAP
RGP1ENSG00000107185.8649.643301032.50630-0.668405.013603.70930K562NAA15
RGP1ENSG00000107185.8926.87560653.755800.503505.218403.53390K562NCBP2
RGP1ENSG00000107185.8952.31120728.053400.387303.408102.68010K562PTBP1
RGP1ENSG00000107185.8889.993901228.85370-0.465403.734203.11700K562PUS1
RGP1ENSG00000107185.8803.573901197.25090-0.575208.009407.03190K562RBM15
RGP1ENSG00000107185.8656.87630531.201600.306302.069301.37560K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGP1 is not available on ENCORE database.





6 RBPs can affect the splicing of RGP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERGP1ENSG00000107185.8chr9+357519523575214235751623357517513575264735758572-0.077000.000030.00078excludedHepG2U2AF2
RIRGP1ENSG00000107185.8chr9+3575065435750986357506543575073835750836357509860.138000.001990.03892includedHepG2IGF2BP3
RIRGP1ENSG00000107185.8chr9+3575065435750986357506543575073835750836357509860.165000.013010.09695includedHepG2U2AF1
RIRGP1ENSG00000107185.8chr9+3575065435750986357506543575073835750836357509860.249000.000000.00000includedHepG2TIAL1
RIRGP1ENSG00000107185.8chr9+3575065435750986357506543575073835750836357509860.146000.000800.01040includedHepG2RBM22
RIRGP1ENSG00000107185.8chr9+3575065435750986357506543575073835750836357509860.136000.006130.07557includedHepG2SRSF9

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RGP1 is not avaliable on ENCORE database.