REPS1

General Information

Gene Name       : REPS1
Gene ID             : ENSG00000135597.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: REPS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878REPS1ENSG00000135597.1827.7230.1228.92ENCSR000AEF
HepG2REPS1ENSG00000135597.1829.1533.6531.40ENCSR985KAT
K562REPS1ENSG00000135597.1822.0124.2123.11ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for REPS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • REPS1 RNA is bound by 18 proteins.  







eCLIP assay for REPS1 is not avaliable on ENCORE database.





18 proteins are bound to REPS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr6139238690139238771-3'-UTR,CDS,intron-Distal,intron-Proximal3.339754.97118HepG2U2AF2
chr6139262525139262581-3'-UTR,5'-UTR,CDS,intron-Distal3.657635.56491HepG2BCLAF1
chr6139232435139232491-3'-UTR,CDS,intron-Distal3.138083.94979HepG2BCLAF1
chr6139242178139242267-3'-UTR,CDS,intron-Distal,intron-Proximal3.091503.21309HepG2GRWD1
chr6139248211139248329-3'-UTR,intron-Distal4.373054.50934HepG2RBFOX2
chr6139248576139248691-3'-UTR,intron-Distal3.713834.30679K562KHSRP
chr6139241331139241420-3'-UTR,CDS,intron-Distal,intron-Proximal3.612535.56491HepG2BCLAF1
chr6139233896139233986-3'-UTR,CDS,intron-Distal,intron-Proximal3.111823.21309HepG2GRWD1
chr6139238698139238746-3'-UTR,CDS,intron-Distal4.299444.80438HepG2KHSRP
chr6139229791139229923-3'-UTR,CDS,intron-Distal,intron-Proximal4.603295.82083HepG2GRWD1
chr6139251152139251212-3'-UTR,CDS,intron-Distal,intron-Proximal4.237854.96452K562YBX3
chr6139250863139250925-3'-UTR,intron-Distal4.520054.45977HepG2U2AF2
chr6139250974139251071-3'-UTR,intron-Distal,intron-Proximal3.245613.07751K562KHSRP
chr6139309135139309199-5'-UTR,intron-Distal,intron-Proximal3.669915.01580HepG2DDX3X
chr6139309013139309067-5'-UTR,intron-Distal,intron-Proximal3.659534.38588HepG2DDX3X
chr6139308655139308777-CDS,intron-Distal3.031784.87174HepG2PPIG
chr6139265106139265154-CDS,intron-Distal,intron-Proximal3.328927.93794HepG2BCLAF1
chr6139308621139308692-CDS,intron-Distal6.116249.40852HepG2PRPF8
chr6139265041139265106-CDS,intron-Distal,intron-Proximal3.567343.68471HepG2BCLAF1
chr6139266723139266838-CDS,intron-Distal,intron-Proximal3.787866.97808HepG2BCLAF1
chr6139268962139269015-CDS,intron-Distal,intron-Proximal4.163963.90287K562LIN28B
chr6139238913139238991-intron-Distal3.818965.78005K562KHSRP
chr6139291362139291453-intron-Distal4.288243.41738HepG2PTBP1
chr6139296920139296976-intron-Distal4.173664.85913HepG2HNRNPC
chr6139239069139239120-intron-Distal3.643893.05068HepG2U2AF2
chr6139277705139277777-intron-Distal5.206637.63523HepG2MATR3
chr6139308497139308596-intron-Distal4.2490212.54324HepG2EFTUD2
chr6139277525139277615-intron-Distal4.419644.64592HepG2HNRNPM
chr6139277564139277638-intron-Distal3.606974.61322HepG2MATR3
chr6139277542139277646-intron-Distal4.357209.06128HepG2SUGP2
chr6139232733139232957-intron-Distal3.973553.82414HepG2HNRNPK
chr6139277881139277931-intron-Distal3.321564.08528HepG2SUGP2
chr6139232866139232967-intron-Distal4.856156.57498HepG2PCBP2
chr6139278648139278721-intron-Distal4.482535.59955HepG2SUGP2
chr6139285585139285684-intron-Distal3.111603.90146K562KHSRP
chr6139232720139232866-intron-Distal4.174866.43614HepG2PCBP2
chr6139238865139238913-intron-Distal,intron-Proximal3.599175.04794HepG2KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for REPS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for REPS1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of REPS1.  








The Knockdown/knockout RNA-Seq assay for REPS1 is not available on ENCORE database.





65 RBPs can affect the gene expression of REPS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
REPS1ENSG00000135597.14891.518401181.05280-0.405703.346402.69490HepG2BOP1
REPS1ENSG00000135597.14935.79300735.250100.347903.239602.53030HepG2CKAP4
REPS1ENSG00000135597.14791.331001054.66320-0.414403.449702.21950HepG2CPSF7
REPS1ENSG00000135597.14725.086301015.35490-0.485806.030105.15060HepG2CELF1
REPS1ENSG00000135597.14920.596701091.73010-0.246002.426301.72580HepG2DAZAP1
REPS1ENSG00000135597.14827.33510680.229200.282402.351301.57780HepG2DDX19B
REPS1ENSG00000135597.14696.105301010.24580-0.537304.214003.45480HepG2DDX3X
REPS1ENSG00000135597.14759.994901093.19290-0.524504.753503.44990HepG2DDX5
REPS1ENSG00000135597.14572.74620971.47640-0.762309.668607.66250HepG2EIF2S2
REPS1ENSG00000135597.14543.16460921.98540-0.763406.908305.89660HepG2EIF4A3
REPS1ENSG00000135597.141276.201301477.18770-0.211002.017301.48600HepG2ETF1
REPS1ENSG00000135597.14522.81870722.25870-0.466202.861101.82400HepG2GNB2L1
REPS1ENSG00000135597.14807.454101229.07590-0.606105.287804.42080HepG2GPKOW
REPS1ENSG00000135597.14828.505901172.93160-0.501503.445402.75190HepG2HNRNPLL
REPS1ENSG00000135597.14690.88840877.13810-0.344401.942201.36720HepG2IGF2BP2
REPS1ENSG00000135597.14974.23770828.376300.233902.335401.65450HepG2ILF2
REPS1ENSG00000135597.14731.42600957.75450-0.388902.343601.75880HepG2NCBP2
REPS1ENSG00000135597.14513.92800779.71500-0.601402.967802.04800HepG2PABPC1
REPS1ENSG00000135597.14674.067301033.40410-0.616406.881305.99650HepG2PUF60
REPS1ENSG00000135597.14970.94880749.213400.373903.064602.42410HepG2PUS1
REPS1ENSG00000135597.14602.94050928.50010-0.622906.848605.82820HepG2RBM25
REPS1ENSG00000135597.14796.27860634.508800.327502.134601.58800HepG2RPS19
REPS1ENSG00000135597.14617.92900803.30880-0.378502.454901.44430HepG2RPS5
REPS1ENSG00000135597.14734.877401160.95850-0.659707.355806.25410HepG2SF3B1
REPS1ENSG00000135597.14829.27450983.46750-0.246001.882801.37920HepG2SF3B4
REPS1ENSG00000135597.14705.84030842.18750-0.254802.302001.70680HepG2SMN1
REPS1ENSG00000135597.141414.975601026.557000.462907.307806.62450HepG2SRSF1
REPS1ENSG00000135597.14603.62880835.18460-0.468405.617204.87960HepG2SRSF9
REPS1ENSG00000135597.14859.618001210.65830-0.494007.881507.10180HepG2SSB
REPS1ENSG00000135597.141351.629301160.406000.220002.344301.76300HepG2SUCLG1
REPS1ENSG00000135597.141214.38510922.792500.396004.626803.93090HepG2TAF15
REPS1ENSG00000135597.141031.81650847.832500.283202.169601.42760HepG2TIA1
REPS1ENSG00000135597.14664.07040795.05650-0.259702.171101.65930HepG2TRIM56
REPS1ENSG00000135597.141359.94480684.430700.990503.107302.06100HepG2U2AF2
REPS1ENSG00000135597.14759.325701068.66050-0.493003.279402.36940HepG2UBE2L3
REPS1ENSG00000135597.14802.839201112.57620-0.470707.806007.00870HepG2ZNF622
REPS1ENSG00000135597.14695.18630492.990000.495703.866702.44400K562AARS
REPS1ENSG00000135597.14745.487701006.95280-0.433702.306801.78050K562AGGF1
REPS1ENSG00000135597.14692.422301047.73780-0.597603.268002.55620K562AKAP8L
REPS1ENSG00000135597.14374.71060485.49720-0.373702.637801.70270K562BCLAF1
REPS1ENSG00000135597.14954.513501477.24790-0.630102.951501.94510K562CELF1
REPS1ENSG00000135597.14547.11120425.654300.362102.699401.39740K562DDX27
REPS1ENSG00000135597.142348.764701035.752201.1811047.6577045.30040K562DDX47
REPS1ENSG00000135597.141227.67640417.770101.5550014.0549011.82870K562EIF3A
REPS1ENSG00000135597.14874.42960488.835100.838906.053704.43650K562EIF3D
REPS1ENSG00000135597.14886.08340499.004400.828304.048503.09580K562EIF3G
REPS1ENSG00000135597.14655.80270403.782800.699606.846205.56550K562EIF4A3
REPS1ENSG00000135597.14701.30440468.207100.582804.428702.94240K562FKBP4
REPS1ENSG00000135597.14815.70390419.916300.9578016.4534015.08580K562FXR1
REPS1ENSG00000135597.14574.78590835.24580-0.539204.843103.79640K562GPKOW
REPS1ENSG00000135597.14715.50890935.96610-0.387503.172702.03290K562HNRNPL
REPS1ENSG00000135597.141695.268801283.172600.401702.227701.51080K562HSPD1
REPS1ENSG00000135597.14371.73750571.03540-0.619303.943502.62890K562IGF2BP2
REPS1ENSG00000135597.14925.21560600.087100.624507.297705.90480K562MAGOH
REPS1ENSG00000135597.14667.21540825.37720-0.306903.066102.28400K562NSUN2
REPS1ENSG00000135597.14750.41990533.920000.491003.833102.68030K562PCBP2
REPS1ENSG00000135597.14762.422401074.22070-0.494602.577401.79010K562PPIG
REPS1ENSG00000135597.14842.91700444.266200.9239010.749209.25670K562PRPF8
REPS1ENSG00000135597.14833.46480583.025800.515505.195804.30960K562PTBP1
REPS1ENSG00000135597.141768.335201311.370400.431202.408901.64950K562PUF60
REPS1ENSG00000135597.141205.35170452.548401.4132022.3069020.01980K562RPS19
REPS1ENSG00000135597.141140.24570756.400100.592003.338701.58760K562RPS3A
REPS1ENSG00000135597.14807.54920449.673000.844607.226905.51300K562RPS3
REPS1ENSG00000135597.141003.67340576.770700.7991010.712608.67240K562SAFB
REPS1ENSG00000135597.14590.10380814.47820-0.464904.815703.76550K562SF3A3
REPS1ENSG00000135597.14317.87210449.02860-0.498403.641802.65630K562SF3B4
REPS1ENSG00000135597.14926.41710571.565200.696608.681807.43430K562SRSF1
REPS1ENSG00000135597.14502.78810672.91080-0.420504.083402.63950K562SRSF7
REPS1ENSG00000135597.14803.884801135.84860-0.498702.884201.60350K562STAU1
REPS1ENSG00000135597.14584.52360430.169500.442302.514401.55100K562SUPV3L1
REPS1ENSG00000135597.141286.07390649.259300.9860019.9701017.85960K562SYNCRIP
REPS1ENSG00000135597.141223.50150778.741200.6517013.6004011.89910K562WDR43
REPS1ENSG00000135597.14747.701901023.85110-0.453503.517402.52370K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for REPS1 is not available on ENCORE database.





30 RBPs can affect the splicing of REPS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.253000.001300.09150includedHepG2G3BP1
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.081000.001030.07895excludedHepG2G3BP1
SEREPS1ENSG00000135597.14chr6-139228631139228737139226003139226269139229804139229953-0.222000.000450.01078excludedK562SF3B4
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.282000.000040.00133excludedHepG2U2AF1
SEREPS1ENSG00000135597.14chr6-139247537139247618139242173139242261139251113139251235-0.213000.005130.07753excludedHepG2U2AF1
SEREPS1ENSG00000135597.14chr6-139238691139238764139236994139237113139241351139241453-0.167000.000060.00326excludedK562AKAP8L
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.216000.000010.00393includedHepG2HNRNPM
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.330000.000000.00004includedHepG2HNRNPK
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.092000.000310.01011excludedHepG2HNRNPK
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.260000.000000.00021includedHepG2QKI
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.082000.000530.03689excludedHepG2AKAP1
SEREPS1ENSG00000135597.14chr6-139238691139238764139236994139237113139241351139241453-0.130000.010980.08745excludedK562AQR
SEREPS1ENSG00000135597.14chr6-139228631139228737139224629139226269139229804139229953-0.124000.000880.01097excludedK562AQR
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.091000.000800.05951excludedHepG2DDX3X
SEREPS1ENSG00000135597.14chr6-1392286311392287371392260061392262691392298041392299530.142000.000400.07464includedK562HNRNPA1
SEREPS1ENSG00000135597.14chr6-139238691139238764139236994139237113139241351139241453-0.120000.000650.01200excludedK562PUS1
SEREPS1ENSG00000135597.14chr6-139247537139247618139242173139242261139251113139251235-0.333000.000000.00001excludedK562PUS1
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.318000.000000.00061includedHepG2NCBP2
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.123000.000010.00189excludedHepG2NCBP2
SEREPS1ENSG00000135597.14chr6-1392386911392387221392369941392371131392413511392414530.784000.001540.06218includedHepG2SFPQ
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.243000.000270.01517includedHepG2MATR3
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.118000.000020.00157excludedHepG2MATR3
SEREPS1ENSG00000135597.14chr6-139247537139247618139242173139242261139251113139251235-0.384000.000250.00732excludedK562U2AF1
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.125000.000040.00157excludedHepG2SRSF1
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.152000.002600.06417excludedHepG2SF3A3
SEREPS1ENSG00000135597.14chr6-139247537139247618139242173139242261139251113139251235-0.228000.000160.02525excludedHepG2SSB
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.173000.000000.00002excludedHepG2IGF2BP3
SEREPS1ENSG00000135597.14chr6-1392475371392476181392421731392422611392511131392512350.228000.000030.02359includedHepG2GRSF1
SEREPS1ENSG00000135597.14chr6-139247537139247618139242173139242261139251113139251235-0.253000.000300.01842excludedHepG2PCBP1
SEREPS1ENSG00000135597.14chr6-139228631139228737139226006139226269139229804139229953-0.134000.000060.00455excludedHepG2SF3B4
SEREPS1ENSG00000135597.14chr6-139238691139238764139236994139237113139241351139241453-0.122000.004320.09981excludedK562UTP18
SEREPS1ENSG00000135597.14chr6-139238691139238783139236994139237113139241351139241453-0.064000.003140.09488excludedK562SF3B1
A3SSREPS1ENSG00000135597.14chr6-1392386911392387641392386911392387611392413511392414530.214000.000720.09514longerHepG2TIAL1
A3SSREPS1ENSG00000135597.14chr6-1392511131392513001392511131392512351392624711392626150.229000.000000.00000longerK562AQR
A3SSREPS1ENSG00000135597.14chr6-1392386911392387831392386911392387641392413511392414530.174000.001360.00915longerK562AQR
A3SSREPS1ENSG00000135597.14chr6-1392340021392341991392340021392340871392358331392358980.098000.000010.00008longerK562AQR
A3SSREPS1ENSG00000135597.14chr6-1392421731392423731392421731392422611392475371392476180.053000.010940.05708longerK562AQR
A5SSREPS1ENSG00000135597.14chr6-139247537139251235139251113139251235139242173139242261-0.414000.000250.03063shorterK562U2AF1
A5SSREPS1ENSG00000135597.14chr6-139247537139251235139251113139251235139242173139242261-0.409000.000010.00043shorterK562PUS1
A5SSREPS1ENSG00000135597.14chr6-1392475371392512351392511131392512351392421731392422610.321000.000110.01086longerHepG2HNRNPK
A5SSREPS1ENSG00000135597.14chr6-1392475371392512351392511131392512351392421731392422610.299000.000290.05041longerHepG2NCBP2
A5SSREPS1ENSG00000135597.14chr6-1392475371392512351392511131392512351392421731392422610.296000.000090.08152longerHepG2GRSF1
A5SSREPS1ENSG00000135597.14chr6-1392475371392512351392511131392512351392421731392422610.428000.000000.00002longerHepG2QKI
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.408000.000000.00000includedK562PUS1
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.191000.007190.04582includedHepG2U2AF2
RIREPS1ENSG00000135597.14chr6-139247537139251235139247537139247618139251113139251235-0.167000.000670.03810excludedK562NCBP2
RIREPS1ENSG00000135597.14chr6-139247537139251235139247537139247618139251113139251235-0.138000.000120.02452excludedHepG2DROSHA
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.343000.000000.00000includedK562AGGF1
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.254000.000180.00255includedK562AKAP8L
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.112000.008190.06813includedHepG2U2AF1
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.163000.000480.00681includedK562RBM15
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.394000.000390.01070includedK562U2AF1
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.162000.001220.01714includedK562UTP18
RIREPS1ENSG00000135597.14chr6-1392475371392512351392475371392476181392511131392512350.081000.002870.01751includedK562AQR
RIREPS1ENSG00000135597.14chr6-139247537139251235139247537139247618139251113139251235-0.138000.001460.02478excludedK562FXR1
MXEREPS1ENSG00000135597.14chr6-139236994139237113139238691139238764139235833139235898139241351139241453-0.237000.005950.041622includedK562AQR
MXEREPS1ENSG00000135597.14chr6-139236994139237113139238691139238764139235833139235898139241351139241453-0.067000.021090.096352includedHepG2U2AF2
MXEREPS1ENSG00000135597.14chr6-139236994139237113139238691139238764139235833139235898139241351139241453-0.225000.009000.089952includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for REPS1 is not avaliable on ENCORE database.