PXDC1

General Information

Gene Name       : PXDC1
Gene ID             : ENSG00000168994.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PXDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PXDC1ENSG00000168994.130.240.190.21ENCSR000AEF
HepG2PXDC1ENSG00000168994.1326.6422.3324.48ENCSR985KAT
K562PXDC1ENSG00000168994.130.060.070.07ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PXDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PXDC1 RNA is bound by 17 proteins.  







eCLIP assay for PXDC1 is not avaliable on ENCORE database.





17 proteins are bound to PXDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr637234603723524-3'-UTR,intron-Distal4.835396.11802HepG2AKAP1
chr637232543723305-3'-UTR,intron-Distal5.088067.73997HepG2TIA1
chr637232163723306-3'-UTR,intron-Distal4.4209410.90685HepG2UPF1
chr637232373723305-3'-UTR,intron-Distal4.0689020.26889HepG2DDX55
chr637236743723841-3'-UTR,intron-Distal4.8862922.44453HepG2UPF1
chr637232043723306-3'-UTR,intron-Distal4.9356811.43825HepG2AKAP1
chr637230973723156-3'-UTR,intron-Distal4.131497.03532HepG2UPF1
chr637237503723852-3'-UTR,intron-Distal4.396358.75828HepG2AKAP1
chr637235253723625-3'-UTR,intron-Distal5.9374512.43282HepG2UPF1
chr637520833752162-5'-UTR,intron-Distal5.8547521.88064HepG2DDX3X
chr637519313751972-5'-UTR,intron-Distal3.555146.05537HepG2DDX3X
chr637517583751846-5'-UTR,CDS,intron-Distal,intron-Proximal4.3699518.74098HepG2DDX3X
chr637518563751898-5'-UTR,intron-Distal,intron-Proximal4.9974013.53182HepG2DDX3X
chr637382363738292-CDS,intron-Distal,intron-Proximal4.6985810.09745HepG2PRPF8
chr637239653724047-CDS,intron-Distal4.120713.74254HepG2SF3B4
chr637446743744807-intron-Distal3.371783.59783HepG2HNRNPK
chr637512163751290-intron-Distal5.7741814.40554HepG2CSTF2T
chr637486263748671-intron-Distal3.119844.49282HepG2HNRNPM
chr637279003727946-intron-Distal,intron-Proximal4.081713.50006HepG2SF3B4
chr637361693736214-intron-Distal4.350894.12480HepG2HNRNPM
chr637514513751495-intron-Distal3.656405.32871HepG2CSTF2T
chr637494953749553-intron-Distal3.730455.32871HepG2CSTF2T
chr637512813751347-intron-Distal4.909443.76634HepG2FKBP4
chr637474693747593-intron-Distal3.110563.12257HepG2CSTF2T
chr637506003750671-intron-Distal3.434965.52022HepG2FAM120A
chr637352363735307-intron-Distal4.643375.72853HepG2HNRNPM
chr637510133751076-intron-Distal3.935784.55582HepG2SLTM
chr637446783744810-intron-Distal5.156607.79030HepG2PCBP2
chr637274593727590-intron-Distal3.231648.86627HepG2HNRNPM
chr637383873738447-intron-Distal,intron-Proximal4.387953.05889HepG2SF3B4
chr637512983751355-intron-Distal3.997873.86417HepG2PRPF4
chr637512903751372-intron-Distal3.7731410.49552HepG2CSTF2T
chr637511853751216-intron-Distal3.313453.46580HepG2CSTF2T
chr637512773751341-intron-Distal4.055297.25311HepG2NKRF
chr637510193751132-intron-Distal3.9215613.08437HepG2CSTF2T
chr637314473731550-intron-Distal3.153604.10915HepG2QKI
chr637488893748949-intron-Distal3.488324.83226HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PXDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PXDC1 is not available on ENCORE database.

  • 69 RBPs can affect the levels of PXDC1.  








The Knockdown/knockout RNA-Seq assay for PXDC1 is not available on ENCORE database.





69 RBPs can affect the gene expression of PXDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PXDC1ENSG00000168994.9748.396101168.48320-0.642803.537302.47750HepG2ABCF1
PXDC1ENSG00000168994.9626.15780836.78070-0.418304.885104.12050HepG2ACO1
PXDC1ENSG00000168994.9696.744701346.69490-0.9507010.868209.88150HepG2AKAP1
PXDC1ENSG00000168994.9479.90380840.61780-0.8087014.0321012.48800HepG2AKAP8L
PXDC1ENSG00000168994.9554.69030364.750700.604703.259602.28470HepG2BCLAF1
PXDC1ENSG00000168994.91434.34400553.892601.3726029.6937028.09300HepG2BOP1
PXDC1ENSG00000168994.9394.371601111.70500-1.4951016.8339015.01110HepG2CNOT7
PXDC1ENSG00000168994.91311.10170773.888000.7605015.9521014.65800HepG2CELF1
PXDC1ENSG00000168994.91042.64300832.001800.325504.147903.26880HepG2DAZAP1
PXDC1ENSG00000168994.9562.82620773.85010-0.459405.897804.74260HepG2DDX19B
PXDC1ENSG00000168994.9394.11020549.30870-0.479003.228802.49970HepG2DDX21
PXDC1ENSG00000168994.9623.38340386.187600.690703.381201.96950HepG2DDX27
PXDC1ENSG00000168994.9642.80590412.836200.638703.428102.57780HepG2DDX55
PXDC1ENSG00000168994.91635.451501108.295800.561204.738803.94970HepG2DDX6
PXDC1ENSG00000168994.9950.98220537.579200.8228014.3183012.81590HepG2DNAJC21
PXDC1ENSG00000168994.9453.31490741.44910-0.709805.378604.13000HepG2EEF2
PXDC1ENSG00000168994.9693.110201177.10000-0.764107.580406.52410HepG2EIF4A3
PXDC1ENSG00000168994.91101.22270820.922300.423705.625904.50420HepG2EIF4G1
PXDC1ENSG00000168994.91198.60390786.372800.608006.709005.46700HepG2EIF4G2
PXDC1ENSG00000168994.9760.874401011.86750-0.411302.457501.42690HepG2ESF1
PXDC1ENSG00000168994.9641.998401003.11590-0.643807.595006.32910HepG2FUBP3
PXDC1ENSG00000168994.9778.193701187.94600-0.610305.712904.74130HepG2FXR1
PXDC1ENSG00000168994.9626.069001101.83550-0.815508.735407.58870HepG2G3BP1
PXDC1ENSG00000168994.9800.376501169.94690-0.547704.896103.70000HepG2G3BP2
PXDC1ENSG00000168994.9618.250601029.21210-0.735305.344503.79290HepG2GRSF1
PXDC1ENSG00000168994.9467.18840603.69090-0.369802.118001.50190HepG2HNRNPC
PXDC1ENSG00000168994.91006.77790665.159100.597908.956207.76010HepG2HNRNPF
PXDC1ENSG00000168994.9902.012401116.07860-0.307201.975001.37780HepG2HNRNPK
PXDC1ENSG00000168994.9941.87960757.854200.313503.595202.83280HepG2HNRNPL
PXDC1ENSG00000168994.9861.42330550.013000.647205.527704.66970HepG2HNRNPLL
PXDC1ENSG00000168994.9565.28850813.69570-0.525503.443802.39090HepG2HNRNPM
PXDC1ENSG00000168994.9496.04530599.69930-0.273801.957201.43820HepG2HNRNPU
PXDC1ENSG00000168994.91068.921701533.40490-0.520603.708202.28120HepG2HSPD1
PXDC1ENSG00000168994.9994.37030654.988900.602207.152706.03640HepG2IGF2BP1
PXDC1ENSG00000168994.9871.42870612.572200.508407.968406.79270HepG2ILF2
PXDC1ENSG00000168994.9785.417501126.56910-0.520403.439502.30520HepG2KHSRP
PXDC1ENSG00000168994.9579.192901194.96420-1.0449012.9544011.66210HepG2MATR3
PXDC1ENSG00000168994.9955.107701223.07240-0.356802.238901.66620HepG2NCBP2
PXDC1ENSG00000168994.9977.421101178.67880-0.270102.707802.10630HepG2PCBP1
PXDC1ENSG00000168994.9730.44230534.883000.449404.387003.47950HepG2PPIL4
PXDC1ENSG00000168994.9379.15860690.68200-0.8652013.3616011.85460HepG2PRPF4
PXDC1ENSG00000168994.91027.356501199.32130-0.223302.091701.60340HepG2PTBP1
PXDC1ENSG00000168994.9958.33150836.093500.196801.906201.39390HepG2PUM1
PXDC1ENSG00000168994.91006.34670835.459000.268402.129701.53770HepG2PUM2
PXDC1ENSG00000168994.9958.416001298.95530-0.438605.158304.34470HepG2QKI
PXDC1ENSG00000168994.9967.023001178.86250-0.285802.164301.56260HepG2RBM25
PXDC1ENSG00000168994.9796.596801334.75310-0.7447015.2195014.14240HepG2NELFE
PXDC1ENSG00000168994.9753.367601243.09820-0.7225014.2662013.03550HepG2RECQL
PXDC1ENSG00000168994.9959.51180716.582400.421103.211802.48390HepG2RPLP0
PXDC1ENSG00000168994.9396.32020585.66940-0.563404.113103.37900HepG2RPS19
PXDC1ENSG00000168994.9491.74750314.827600.643303.239902.39860HepG2RRP9
PXDC1ENSG00000168994.9565.425801155.94240-1.0317010.033208.68780HepG2SF3A3
PXDC1ENSG00000168994.91223.81950544.366001.1686020.3475018.62560HepG2SF3B1
PXDC1ENSG00000168994.91803.497201096.072100.7184019.3028018.29240HepG2SRFBP1
PXDC1ENSG00000168994.9657.485001303.35090-0.9872025.7892024.66410HepG2SRSF1
PXDC1ENSG00000168994.91100.44440653.506800.7517014.4258013.05480HepG2SRSF7
PXDC1ENSG00000168994.9870.12300570.555000.608803.486202.12350HepG2SUB1
PXDC1ENSG00000168994.9901.91210410.917401.1340011.5779010.35450HepG2SUPV3L1
PXDC1ENSG00000168994.9695.026501171.44480-0.7531013.3855012.29040HepG2TAF15
PXDC1ENSG00000168994.9825.53950536.267900.622305.641104.66140HepG2TARDBP
PXDC1ENSG00000168994.9684.850001500.38920-1.131507.376705.73160HepG2TBRG4
PXDC1ENSG00000168994.9459.52240275.390300.738604.505603.27970HepG2TFIP11
PXDC1ENSG00000168994.9755.46600587.930100.361603.388202.77820HepG2TRIM56
PXDC1ENSG00000168994.91508.665201008.951800.580305.287604.43500HepG2U2AF1
PXDC1ENSG00000168994.9388.73840242.704200.679503.814202.92370HepG2UCHL5
PXDC1ENSG00000168994.9640.436801025.14660-0.6787012.1862010.91140HepG2UPF1
PXDC1ENSG00000168994.9825.109601053.68910-0.352803.728402.53110HepG2UTP18
PXDC1ENSG00000168994.9985.093501127.46160-0.194701.807101.33940HepG2ZNF622
PXDC1ENSG00000168994.912.972201.160503.482602.208701.48220K562RPS19
PXDC1ENSG00000168994.914.529801.983002.873202.547701.40090K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PXDC1 is not available on ENCORE database.





2 RBPs can affect the splicing of PXDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPXDC1ENSG00000168994.9chr6-3737850373796437373123737430373829037383820.070000.000560.05289includedHepG2PRPF8
SEPXDC1ENSG00000168994.9chr6-3737850373796437373123737430373829037383820.052000.000010.00051includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PXDC1 is not avaliable on ENCORE database.