PRKX

General Information

Gene Name       : PRKX
Gene ID             : ENSG00000183943.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRKX)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRKXENSG00000183943.516.6619.8218.24ENCSR000AEF
HepG2PRKXENSG00000183943.50.030.230.13ENCSR985KAT
K562PRKXENSG00000183943.517.0317.5417.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKX is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKX RNA is bound by 6 proteins.  







eCLIP assay for PRKX is not avaliable on ENCORE database.





6 proteins are bound to PRKX RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX35224983522547-3'-UTR,intron-Distal4.740315.09993K562PUM2
chrX35224303522498-3'-UTR,intron-Distal5.6027610.55912K562PUM2
chrX35265503526645-3'-UTR,intron-Distal,intron-Proximal6.0783717.23099K562TARDBP
chrX35737593573844-intron-Distal4.520297.90406K562QKI
chrX35736143573661-intron-Distal4.492143.42885K562AGGF1
chrX35567073556792-intron-Distal5.393088.50063K562PTBP1
chrX35739273574051-intron-Distal4.369134.50052K562HNRNPL
chrX35738443573963-intron-Distal6.4011517.85441K562AGGF1
chrX35569043557007-intron-Distal5.215016.90462K562PTBP1
chrX35737003573800-intron-Distal4.216044.71638K562HNRNPL
chrX36297613629847-intron-Distal5.193544.67693K562PTBP1
chrX35738463573911-intron-Distal3.721613.19036K562HNRNPL
chrX35567923556881-intron-Distal4.105105.63677K562PTBP1
chrX36298473629920-intron-Distal4.9218112.02468K562PTBP1
chrX35736943573736-intron-Distal3.831185.69449K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKX is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKX is not available on ENCORE database.

  • 72 RBPs can affect the levels of PRKX.  








The Knockdown/knockout RNA-Seq assay for PRKX is not available on ENCORE database.





72 RBPs can affect the gene expression of PRKX :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKXENSG00000183943.527.521700.535805.682607.068005.29180HepG2GRSF1
PRKXENSG00000183943.524.567400.0000099999.999906.462705.53170HepG2MATR3
PRKXENSG00000183943.534.661404.407302.975306.035105.05710HepG2PUM2
PRKXENSG00000183943.555.340206.304403.133808.637107.84010HepG2RBM22
PRKXENSG00000183943.517.374000.657204.724303.865203.14960HepG2RPS19
PRKXENSG00000183943.511.944301.594702.904901.972201.40120HepG2SF3A3
PRKXENSG00000183943.511.901200.0000099999.999903.157202.66080HepG2SRSF1
PRKXENSG00000183943.548.106401.515104.9887011.9622011.05050HepG2TIAL1
PRKXENSG00000183943.51877.771002420.89620-0.366502.857701.60870K562ABCF1
PRKXENSG00000183943.5860.319601393.53300-0.6958014.3436013.15520K562AGGF1
PRKXENSG00000183943.51039.732301450.00960-0.479905.071904.17610K562AKAP8L
PRKXENSG00000183943.51190.605101872.07310-0.652908.410507.47700K562AQR
PRKXENSG00000183943.5755.076301310.07110-0.7950010.038008.32690K562BOP1
PRKXENSG00000183943.51215.420901686.14860-0.472304.030002.25780K562BUD13
PRKXENSG00000183943.5469.71870678.92320-0.531504.114702.77860K562CCAR1
PRKXENSG00000183943.51340.310901665.42840-0.313303.172501.89690K562CCDC124
PRKXENSG00000183943.5809.318501186.46410-0.551905.719003.91050K562CIRBP
PRKXENSG00000183943.51407.315201894.89750-0.429203.237501.65650K562CKAP4
PRKXENSG00000183943.51370.446202143.17270-0.645105.016103.49590K562CPEB4
PRKXENSG00000183943.5832.169401392.98410-0.7432011.7976010.16450K562CPSF6
PRKXENSG00000183943.5544.38200807.62830-0.569106.203004.53550K562CSTF2
PRKXENSG00000183943.52468.760003090.28680-0.324003.639202.51990K562CELF1
PRKXENSG00000183943.51136.498501381.02880-0.281102.865001.63070K562DDX21
PRKXENSG00000183943.5676.16540911.35250-0.430603.928502.65700K562DDX3X
PRKXENSG00000183943.51256.240402218.24460-0.8203011.7152010.47480K562DDX47
PRKXENSG00000183943.5624.66400969.72680-0.634505.985104.60310K562EFTUD2
PRKXENSG00000183943.51025.343201542.10190-0.5888010.466909.20580K562EIF2S2
PRKXENSG00000183943.5382.51840690.59440-0.852305.216403.79490K562EIF3A
PRKXENSG00000183943.5646.599101038.40960-0.683405.577004.03750K562EIF3D
PRKXENSG00000183943.5697.09160961.18750-0.463504.660003.63900K562EIF3G
PRKXENSG00000183943.51937.485602513.46630-0.375504.232903.07890K562EIF4G2
PRKXENSG00000183943.51307.866501740.05340-0.411903.337202.39880K562FIP1L1
PRKXENSG00000183943.5889.974301417.32310-0.671308.023806.52150K562FMR1
PRKXENSG00000183943.5753.173301201.30700-0.673607.057105.52660K562FTO
PRKXENSG00000183943.51272.37980990.146200.361703.989603.28250K562FXR1
PRKXENSG00000183943.5752.954001329.95910-0.8207012.3212010.62760K562GPKOW
PRKXENSG00000183943.51233.203502054.97260-0.7367012.3122010.69720K562GRSF1
PRKXENSG00000183943.51034.514301302.45310-0.332302.933001.82620K562HNRNPA1
PRKXENSG00000183943.5664.475001106.20800-0.735309.658708.59840K562HNRNPC
PRKXENSG00000183943.51529.636202004.52960-0.390103.953702.66270K562HNRNPL
PRKXENSG00000183943.51053.479601431.12620-0.442003.340902.31060K562HNRNPM
PRKXENSG00000183943.51109.673701442.37120-0.378304.421503.28270K562HNRNPU
PRKXENSG00000183943.51503.477602359.27290-0.650006.584805.37020K562HSPD1
PRKXENSG00000183943.5749.376301107.06050-0.563004.309602.91010K562IGF2BP2
PRKXENSG00000183943.5771.956601135.61370-0.556903.717002.61740K562KRR1
PRKXENSG00000183943.51186.004101473.04450-0.312702.563801.54260K562MAK16
PRKXENSG00000183943.5838.303701298.18760-0.631007.920306.39760K562METAP2
PRKXENSG00000183943.51428.758802679.13880-0.9070016.6199014.10640K562MSI2
PRKXENSG00000183943.51161.119001586.48810-0.450307.518506.24360K562MTPAP
PRKXENSG00000183943.51333.543501762.81330-0.402608.385707.18690K562NSUN2
PRKXENSG00000183943.51186.052402230.20450-0.911007.572505.54270K562PABPC1
PRKXENSG00000183943.5908.237601429.66850-0.654502.853901.84380K562PABPN1
PRKXENSG00000183943.5848.012701137.27500-0.423404.238402.54550K562PCBP1
PRKXENSG00000183943.5983.898501364.13740-0.471403.758302.78810K562PCBP3
PRKXENSG00000183943.5795.099901046.31160-0.396103.620902.69830K562POLR2G
PRKXENSG00000183943.51290.437301975.17130-0.614106.403205.06580K562PPIG
PRKXENSG00000183943.51057.552801700.30380-0.685102.782801.34230K562PPP1R8
PRKXENSG00000183943.5699.10850943.65260-0.432703.001702.22010K562PRPF8
PRKXENSG00000183943.51355.796101130.354600.262302.041201.45420K562PTBP1
PRKXENSG00000183943.52419.077102916.78890-0.269902.663301.61900K562PUM1
PRKXENSG00000183943.52134.713402858.07270-0.421006.702605.19280K562PUM2
PRKXENSG00000183943.5986.410901438.18790-0.544006.035205.27080K562PUS1
PRKXENSG00000183943.5587.85370904.69350-0.622007.053905.46740K562RCC2
PRKXENSG00000183943.5277.59710961.30780-1.7920029.9919027.37430K562RPS19
PRKXENSG00000183943.5901.605701264.83060-0.488403.698902.56640K562SF3B1
PRKXENSG00000183943.52055.838001781.963900.206202.440701.55560K562SRPK2
PRKXENSG00000183943.5834.314801046.55550-0.327002.236501.31240K562SRSF5
PRKXENSG00000183943.5657.47360913.82300-0.475002.880801.84350K562SUPV3L1
PRKXENSG00000183943.5557.27370953.96120-0.775507.933106.27860K562TIAL1
PRKXENSG00000183943.5754.095601013.25000-0.426203.369902.30660K562TRIM56
PRKXENSG00000183943.5740.52200949.49960-0.358602.705001.91050K562U2AF2
PRKXENSG00000183943.5665.60330967.08740-0.539004.322403.02450K562UCHL5
PRKXENSG00000183943.51271.053001869.14180-0.5564012.1708010.79730K562UPF1
PRKXENSG00000183943.51158.868301599.37630-0.464805.422004.17620K562WDR3
PRKXENSG00000183943.5871.261601663.09240-0.9327030.7505028.48200K562WDR43
PRKXENSG00000183943.51704.633402108.99850-0.307102.631201.79370K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKX is not available on ENCORE database.





12 RBPs can affect the splicing of PRKX :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRKXENSG00000183943.5chrX-355989235600123544459354455535731893573453-0.331000.000400.00996excludedK562SF3B4
SEPRKXENSG00000183943.5chrX-3529262352937535266653526986353021735303220.244000.003550.08135includedK562AKAP8L
SEPRKXENSG00000183943.5chrX-355989235600123544459354455535731893573453-0.230000.000410.04888excludedK562FMR1
SEPRKXENSG00000183943.5chrX-3529238352937535224103526986353021735302960.379000.000050.01991includedK562WDR43
SEPRKXENSG00000183943.5chrX-3529262352937535266653526986353021735303220.314000.000260.00548includedK562PUS1
SEPRKXENSG00000183943.5chrX-352926235293753526665352698635302173530322-0.485000.000680.09341excludedK562FXR2
SEPRKXENSG00000183943.5chrX-3529262352937535266653526986353021735303220.228000.001790.03204includedK562U2AF2
SEPRKXENSG00000183943.5chrX-3529262352937535266653526986353021735303220.348000.000010.00058includedK562HNRNPU
SEPRKXENSG00000183943.5chrX-3529262352937535266653526986353021735303220.270000.000670.02008includedK562AGGF1
SEPRKXENSG00000183943.5chrX-355989235600123544459354455535731893573453-0.227000.000100.00649excludedK562SF3B1
SEPRKXENSG00000183943.5chrX-3529262352937535266653526986353021735303220.302000.000030.04688includedK562DDX3X
MXEPRKXENSG00000183943.5chrX-355989235600123573189357345335444593544555359263835928070.176000.004340.058381includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRKX is not avaliable on ENCORE database.