POMT1

General Information

Gene Name       : POMT1
Gene ID             : ENSG00000130714.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: POMT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POMT1ENSG00000130714.153.196.164.67ENCSR000AEF
HepG2POMT1ENSG00000130714.1517.008.5012.75ENCSR985KAT
K562POMT1ENSG00000130714.1511.029.2410.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POMT1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • POMT1 RNA is bound by 13 proteins.  







eCLIP assay for POMT1 is not avaliable on ENCORE database.





13 proteins are bound to POMT1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9134398756134398828+3'-UTR3.963693.64119HepG2UPF1
chr9134398862134398949+3'-UTR4.310633.87930K562UPF1
chr9134398841134398968+3'-UTR4.341724.78313HepG2UPF1
chr9134378391134378454+5'-UTR4.410995.48791HepG2DDX3X
chr9134378356134378461+5'-UTR,intron-Proximal4.533956.30252K562DDX3X
chr9134378334134378391+5'-UTR3.340433.16711HepG2DDX3X
chr9134394851134394910+CDS,intron-Proximal3.375015.13777HepG2PRPF8
chr9134394842134394874+CDS,intron-Proximal4.850443.86495K562DDX24
chr9134394271134394345+CDS,intron-Proximal4.969376.76175HepG2PPIG
chr9134386759134386864+CDS,intron-Proximal4.142427.39306HepG2PPIG
chr9134394775134394792+CDS,intron-Proximal4.593163.59565K562DDX24
chr9134397610134397658+CDS,intron-Proximal4.123634.98250K562AQR
chr9134382871134382904+CDS,intron-Distal,intron-Proximal4.296548.78209HepG2PRPF8
chr9134387498134387525+CDS,intron-Proximal3.466163.32039HepG2PPIG
chr9134386730134386841+CDS3.023533.10677K562SRSF1
chr9134385716134385788+CDS,intron-Proximal3.701343.62357HepG2U2AF2
chr9134388625134388704+CDS,intron-Proximal3.262924.94718HepG2PPIG
chr9134394757134394842+CDS,intron-Proximal4.086453.70678K562BUD13
chr9134386781134386864+CDS,intron-Proximal3.463083.31745K562ZNF622
chr9134386851134386976+CDS,intron-Distal,intron-Proximal3.745613.02234K562KHSRP
chr9134385636134385700+CDS,intron-Distal,intron-Proximal5.265366.90654K562SF3B4
chr9134388625134388698+CDS,intron-Proximal4.539706.85891K562DDX24
chr9134397880134397989+intron-Distal4.204125.97994K562AQR
chr9134387176134387247+intron-Distal4.938305.95026HepG2U2AF2
chr9134385592134385636+intron-Distal,intron-Proximal4.654163.91589K562SF3B4
chr9134378862134378943+intron-Distal3.992743.43867K562CSTF2T
chr9134382904134382939+intron-Distal,intron-Proximal4.933749.43475HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POMT1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POMT1 is not available on ENCORE database.

  • 63 RBPs can affect the levels of POMT1.  








The Knockdown/knockout RNA-Seq assay for POMT1 is not available on ENCORE database.





63 RBPs can affect the gene expression of POMT1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POMT1ENSG00000130714.11414.26980550.89300-0.411203.551902.87860HepG2ACO1
POMT1ENSG00000130714.11832.69750684.237000.283202.222801.59530HepG2AUH
POMT1ENSG00000130714.11429.41070301.022000.512402.304701.48660HepG2BCLAF1
POMT1ENSG00000130714.11462.78860322.384200.521503.211802.57290HepG2BOP1
POMT1ENSG00000130714.11728.99020523.855700.476602.365201.47120HepG2CCAR1
POMT1ENSG00000130714.11680.02270550.771300.304002.590401.94250HepG2CKAP4
POMT1ENSG00000130714.11581.92070438.173600.409202.474601.51500HepG2DDX5
POMT1ENSG00000130714.11426.36950292.416700.544003.610002.49700HepG2DHX30
POMT1ENSG00000130714.11925.88670488.918400.9211010.409509.30570HepG2EIF2S1
POMT1ENSG00000130714.11891.35560540.251800.722306.099205.15400HepG2EIF4A3
POMT1ENSG00000130714.11379.30770526.12650-0.472002.107501.50330HepG2EIF4B
POMT1ENSG00000130714.11417.02800569.02740-0.448402.210701.51880HepG2FIP1L1
POMT1ENSG00000130714.11571.30160432.241900.402302.530201.77740HepG2FUBP3
POMT1ENSG00000130714.11649.91100505.725800.361801.851901.30210HepG2G3BP1
POMT1ENSG00000130714.11583.70490340.464700.777605.954604.96480HepG2HNRNPC
POMT1ENSG00000130714.11533.93860386.063800.467703.744002.92020HepG2HNRNPF
POMT1ENSG00000130714.11694.34170512.318300.438502.829002.12170HepG2HNRNPK
POMT1ENSG00000130714.11592.18630380.158800.639305.884104.86790HepG2IGF2BP1
POMT1ENSG00000130714.11845.66280553.596400.611103.587802.64150HepG2LARP4
POMT1ENSG00000130714.11203.68250333.00690-0.709202.587101.56780HepG2METAP2
POMT1ENSG00000130714.11548.57720353.508500.633803.539202.37170HepG2PCBP2
POMT1ENSG00000130714.11405.20910301.656900.425702.807002.06520HepG2PPIL4
POMT1ENSG00000130714.11540.33260415.942800.377402.030701.43470HepG2RPLP0
POMT1ENSG00000130714.11489.98980301.186900.702007.857106.85400HepG2SAFB2
POMT1ENSG00000130714.11546.85120316.846300.787304.927104.00830HepG2SF3B1
POMT1ENSG00000130714.11675.27400551.420200.292202.097101.57100HepG2SF3B4
POMT1ENSG00000130714.11610.95570492.907900.309602.510801.83800HepG2SLBP
POMT1ENSG00000130714.11244.75590352.55430-0.526502.011601.35010HepG2SNRNP70
POMT1ENSG00000130714.11425.59710575.57230-0.435503.360102.85200HepG2SRSF1
POMT1ENSG00000130714.11522.13180379.308200.460903.568502.79260HepG2SRSF7
POMT1ENSG00000130714.11527.86820384.131100.458503.045902.06450HepG2SUPT6H
POMT1ENSG00000130714.11495.72020339.107800.547702.542201.89060HepG2SUPV3L1
POMT1ENSG00000130714.11435.88960312.120500.481802.678701.96410HepG2TARDBP
POMT1ENSG00000130714.11442.29510328.594600.428602.651302.16000HepG2TIAL1
POMT1ENSG00000130714.11747.05620502.215600.572805.519204.23410HepG2TUFM
POMT1ENSG00000130714.11285.28970200.300500.510202.164601.49300HepG2UCHL5
POMT1ENSG00000130714.11545.82310310.438400.814004.281803.01860HepG2UPF2
POMT1ENSG00000130714.11399.40360552.39320-0.467804.007003.30580HepG2UTP3
POMT1ENSG00000130714.11478.13200333.815400.518302.411301.73040HepG2XRN2
POMT1ENSG00000130714.11510.52630383.045100.414403.375402.64450HepG2ZC3H8
POMT1ENSG00000130714.111177.36230813.648900.533008.585307.65850K562AGGF1
POMT1ENSG00000130714.111190.53750894.147700.412903.932702.71810K562AKAP8
POMT1ENSG00000130714.111038.81790846.655900.295002.174601.59290K562AKAP8L
POMT1ENSG00000130714.11534.13240378.750400.495804.331203.11360K562BCLAF1
POMT1ENSG00000130714.11320.78170217.655100.559403.261602.40800K562CPSF6
POMT1ENSG00000130714.11440.91940332.110200.408802.940401.57240K562DDX27
POMT1ENSG00000130714.11687.97470541.484300.345302.666401.95740K562EIF2S2
POMT1ENSG00000130714.11560.89460402.988300.476902.368301.41960K562EIF3D
POMT1ENSG00000130714.11322.76380221.464900.543302.805201.94560K562FMR1
POMT1ENSG00000130714.11444.82420613.91750-0.464804.079903.36610K562FXR1
POMT1ENSG00000130714.11164.67320330.49770-1.005006.542305.35340K562G3BP2
POMT1ENSG00000130714.11612.93790448.246500.451302.426701.48430K562IGF2BP2
POMT1ENSG00000130714.111182.44480898.452700.396204.057503.03250K562KIF1C
POMT1ENSG00000130714.11631.68660470.990100.423403.057502.17310K562MAGOH
POMT1ENSG00000130714.111091.47170860.089700.343602.725501.66000K562MAK16
POMT1ENSG00000130714.111277.339101006.502500.343703.286502.28070K562MBNL1
POMT1ENSG00000130714.11283.40670202.841500.482402.174001.39670K562METAP2
POMT1ENSG00000130714.11794.08540503.811000.656302.740801.75700K562PABPN1
POMT1ENSG00000130714.11510.95970392.476800.380502.387601.55390K562PSIP1
POMT1ENSG00000130714.111015.19760839.526400.274001.792801.33720K562PUS1
POMT1ENSG00000130714.11989.51800818.094700.274402.345901.79250K562RBM15
POMT1ENSG00000130714.11554.54910373.114100.571603.202102.32180K562RPS19
POMT1ENSG00000130714.11288.57970197.638600.546002.365301.47150K562SF3B1
POMT1ENSG00000130714.11587.77590448.615500.389702.569601.88470K562SRSF1
POMT1ENSG00000130714.11593.64860423.711100.486403.516802.30840K562SRSF5
POMT1ENSG00000130714.11613.07400437.944500.485203.841602.85460K562TIA1
POMT1ENSG00000130714.11834.93820674.698300.307302.153701.51390K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POMT1 is not available on ENCORE database.





13 RBPs can affect the splicing of POMT1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPOMT1ENSG00000130714.11chr9+1343815001343816071343783041343784601343817891343818400.269000.004840.07398includedK562SRSF1
SEPOMT1ENSG00000130714.11chr9+134382754134382901134381789134381840134384297134384409-0.462000.004000.06236excludedK562SF3B4
SEPOMT1ENSG00000130714.11chr9+134379575134379727134378357134378460134381500134381607-0.383000.000380.01805excludedK562FXR1
SEPOMT1ENSG00000130714.11chr9+1343795751343797271343783571343784601343815001343816070.225000.000390.06218includedK562NSUN2
SEPOMT1ENSG00000130714.11chr9+134379575134379727134378357134378460134381500134381607-0.239000.000140.02199excludedHepG2LARP4
A3SSPOMT1ENSG00000130714.11chr9+1343973661343976111343974331343976111343967321343968590.083000.002420.01529longerK562AQR
A5SSPOMT1ENSG00000130714.11chr9+134386723134386859134386723134386854134387427134387523-0.415000.000000.00061shorterHepG2LARP4
A5SSPOMT1ENSG00000130714.11chr9+1343867231343868591343867231343868541343874271343875230.192000.000490.08050longerK562HNRNPUL1
RIPOMT1ENSG00000130714.11chr9+1343852891343858021343852891343853831343856461343858020.285000.001650.09205includedHepG2HNRNPL
RIPOMT1ENSG00000130714.11chr9+1343852891343858021343852891343853831343856461343858020.279000.000390.00603includedHepG2QKI
RIPOMT1ENSG00000130714.11chr9+134385289134385802134385289134385383134385646134385802-0.306000.001070.07165excludedK562XRN2
RIPOMT1ENSG00000130714.11chr9+1343852891343858021343852891343853831343856461343858020.376000.000040.00090includedHepG2TAF15
RIPOMT1ENSG00000130714.11chr9+134385289134385802134385289134385383134385646134385802-0.309000.000380.02179excludedK562SUPV3L1
MXEPOMT1ENSG00000130714.11chr9+134379575134379727134388625134388718134378311134378460134390812134390909-0.149000.006180.080892includedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POMT1 is not avaliable on ENCORE database.