PDK3

General Information

Gene Name       : PDK3
Gene ID             : ENSG00000067992.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PDK3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PDK3ENSG00000067992.1315.0113.9014.46ENCSR000AEF
HepG2PDK3ENSG00000067992.134.437.646.04ENCSR985KAT
K562PDK3ENSG00000067992.130.570.870.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PDK3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PDK3 RNA is bound by 1 proteins.  







eCLIP assay for PDK3 is not avaliable on ENCORE database.





1 proteins are bound to PDK3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX2448340324483459+5'-UTR4.821193.99162HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PDK3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PDK3 is not available on ENCORE database.

  • 83 RBPs can affect the levels of PDK3.  








The Knockdown/knockout RNA-Seq assay for PDK3 is not available on ENCORE database.





83 RBPs can affect the gene expression of PDK3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PDK3ENSG00000067992.8118.90080203.50250-0.775303.381702.51360HepG2ASCC1
PDK3ENSG00000067992.872.93120173.53460-1.250605.265603.96620HepG2BCCIP
PDK3ENSG00000067992.8107.56720179.65290-0.740003.274102.44280HepG2CALR
PDK3ENSG00000067992.8113.02310183.40930-0.698403.614702.87220HepG2CKAP4
PDK3ENSG00000067992.873.41750143.66210-0.968503.192102.36680HepG2CNOT7
PDK3ENSG00000067992.8178.71990240.15050-0.426201.885501.33650HepG2CELF1
PDK3ENSG00000067992.896.93880161.39580-0.735503.005502.30110HepG2DDX21
PDK3ENSG00000067992.887.06600170.61030-0.970503.471102.61720HepG2DDX55
PDK3ENSG00000067992.8112.08540175.50980-0.647002.815702.13270HepG2DKC1
PDK3ENSG00000067992.877.81260183.94880-1.241203.416702.64080HepG2DNAJC21
PDK3ENSG00000067992.8100.01370165.17880-0.723802.464301.59200HepG2EEF2
PDK3ENSG00000067992.881.98410215.05310-1.391306.531005.54740HepG2EIF4A3
PDK3ENSG00000067992.8108.68490209.32770-0.945603.871103.06260HepG2EIF4B
PDK3ENSG00000067992.8115.44620312.77910-1.4379016.0634014.81130HepG2ETF1
PDK3ENSG00000067992.8109.47010178.72780-0.707202.667501.91090HepG2FIP1L1
PDK3ENSG00000067992.894.83830178.45990-0.912103.895202.68370HepG2GNB2L1
PDK3ENSG00000067992.871.09780132.99000-0.903403.064801.88880HepG2GRSF1
PDK3ENSG00000067992.866.26490185.71030-1.486704.484203.68710HepG2HNRNPA1
PDK3ENSG00000067992.867.66920206.54580-1.609904.576803.69940HepG2HNRNPC
PDK3ENSG00000067992.867.76090115.99000-0.775502.260201.68510HepG2HNRNPLL
PDK3ENSG00000067992.8117.98820205.18190-0.798302.105401.56860HepG2HNRNPU
PDK3ENSG00000067992.8120.33640204.57720-0.765602.977702.28140HepG2IGF2BP2
PDK3ENSG00000067992.8136.90180290.97450-1.087806.779605.46410HepG2LARP4
PDK3ENSG00000067992.886.68050216.96490-1.323708.145407.03170HepG2MAGOH
PDK3ENSG00000067992.869.71670144.56500-1.052104.866003.81360HepG2MSI2
PDK3ENSG00000067992.895.67360223.34550-1.223107.145206.14940HepG2NCBP2
PDK3ENSG00000067992.8139.70330256.04960-0.874106.006704.88430HepG2NOL12
PDK3ENSG00000067992.877.68550156.61270-1.011503.056101.90270HepG2NONO
PDK3ENSG00000067992.887.79440198.95840-1.180306.625405.51620HepG2PABPC4
PDK3ENSG00000067992.8110.43980203.12320-0.879102.370601.58130HepG2PARN
PDK3ENSG00000067992.893.38110176.96970-0.922305.107604.32310HepG2PCBP1
PDK3ENSG00000067992.8114.77010200.63270-0.805802.901901.83700HepG2PCBP2
PDK3ENSG00000067992.860.05740131.66790-1.132503.929602.98700HepG2PRPF8
PDK3ENSG00000067992.8116.98620180.06940-0.622202.704502.16220HepG2PTBP1
PDK3ENSG00000067992.8142.11450244.42220-0.782304.324803.59920HepG2PUF60
PDK3ENSG00000067992.8109.10610259.46550-1.2498012.0344010.98080HepG2PUM1
PDK3ENSG00000067992.8129.69240259.27560-0.999406.931105.88740HepG2PUM2
PDK3ENSG00000067992.871.13450193.66610-1.445006.377505.33180HepG2RAVER1
PDK3ENSG00000067992.8124.68640261.42210-1.068108.138207.35880HepG2RBM22
PDK3ENSG00000067992.8131.97160186.64250-0.500101.947401.41800HepG2RECQL
PDK3ENSG00000067992.878.59800190.14620-1.274506.082504.71630HepG2RPS10
PDK3ENSG00000067992.857.04970130.47440-1.193505.370104.54690HepG2RPS19
PDK3ENSG00000067992.878.73760194.39450-1.303907.162205.91560HepG2RPS2
PDK3ENSG00000067992.855.92520144.26200-1.367106.307005.10420HepG2RPS3A
PDK3ENSG00000067992.847.07230130.25230-1.468405.586904.50570HepG2RRP9
PDK3ENSG00000067992.896.19600226.96430-1.238405.820104.81880HepG2SF3A3
PDK3ENSG00000067992.8116.51200187.48250-0.686303.117902.49530HepG2SF3B4
PDK3ENSG00000067992.894.27400213.12450-1.176803.390702.69060HepG2SMN1
PDK3ENSG00000067992.8123.87950197.19290-0.670702.712801.76760HepG2SMNDC1
PDK3ENSG00000067992.859.29690127.73550-1.107103.564302.67230HepG2SNRNP70
PDK3ENSG00000067992.8165.50460295.26070-0.835106.579005.89700HepG2SRFBP1
PDK3ENSG00000067992.8124.59840241.33190-0.953706.466505.56430HepG2SRSF5
PDK3ENSG00000067992.8105.55420159.20040-0.592902.493101.96310HepG2SRSF9
PDK3ENSG00000067992.8143.55210256.34600-0.836506.058705.35470HepG2SSB
PDK3ENSG00000067992.871.23950125.49330-0.816902.896901.76810HepG2STIP1
PDK3ENSG00000067992.8161.70000274.46040-0.763304.990104.19700HepG2SUCLG1
PDK3ENSG00000067992.859.30580169.85610-1.518106.897805.90620HepG2SUPV3L1
PDK3ENSG00000067992.860.00290113.10080-0.914502.947302.20200HepG2TARDBP
PDK3ENSG00000067992.852.43100138.69880-1.403504.923503.53200HepG2TBRG4
PDK3ENSG00000067992.814.89350113.85850-2.9345013.1468011.30470HepG2TFIP11
PDK3ENSG00000067992.850.32120199.45730-1.986806.003805.32040HepG2TIAL1
PDK3ENSG00000067992.8110.22120194.37870-0.818502.867201.37250HepG2TRA2A
PDK3ENSG00000067992.8100.43800201.14930-1.002002.853302.28310HepG2TRIM56
PDK3ENSG00000067992.8105.30520238.79100-1.181208.086206.46390HepG2TUFM
PDK3ENSG00000067992.871.53350152.84130-1.095305.087004.24960HepG2U2AF1
PDK3ENSG00000067992.836.80240100.35030-1.447205.410004.34240HepG2UCHL5
PDK3ENSG00000067992.8140.52230201.28410-0.518402.335301.68580HepG2UPF1
PDK3ENSG00000067992.8129.28010212.93200-0.719902.591401.57040HepG2XRCC6
PDK3ENSG00000067992.8102.30290221.37190-1.113607.013706.24730HepG2ZNF622
PDK3ENSG00000067992.899.23130193.39820-0.962703.451101.99710HepG2ZRANB2
PDK3ENSG00000067992.898.5449051.845800.926503.069202.47600K562AGGF1
PDK3ENSG00000067992.890.6924053.949800.749302.126401.55050K562AKAP8L
PDK3ENSG00000067992.827.3883060.50270-1.143402.947302.27620K562DDX47
PDK3ENSG00000067992.820.8747050.12120-1.263702.560801.79470K562EIF3G
PDK3ENSG00000067992.858.1577024.728301.233702.959002.08060K562FIP1L1
PDK3ENSG00000067992.88.9929061.36780-2.770603.816103.12260K562FXR1
PDK3ENSG00000067992.816.9503045.58050-1.427102.568001.99020K562HNRNPC
PDK3ENSG00000067992.834.2648082.93680-1.275304.560403.47370K562MAGOH
PDK3ENSG00000067992.8105.6994064.132800.720702.254101.44690K562MBNL1
PDK3ENSG00000067992.869.4243025.253601.458902.709301.73250K562PABPN1
PDK3ENSG00000067992.837.84950105.18800-1.474605.000603.14740K562PNPT1
PDK3ENSG00000067992.858.1168028.080101.049302.405401.64280K562PPIG
PDK3ENSG00000067992.829.5693080.57710-1.446305.302804.40880K562PTBP1
PDK3ENSG00000067992.839.87890111.70630-1.486004.566903.52190K562PUF60
PDK3ENSG00000067992.86.2426030.26410-2.277403.360102.16530K562SAFB
PDK3ENSG00000067992.88.9469034.06510-1.928803.310902.41290K562SYNCRIP
PDK3ENSG00000067992.894.4233050.525700.902002.776101.50330K562TROVE2
PDK3ENSG00000067992.8147.7501082.521500.840203.722702.69360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PDK3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PDK3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PDK3 is not avaliable on ENCORE database.