OFD1

General Information

Gene Name       : OFD1
Gene ID             : ENSG00000046651.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: OFD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878OFD1ENSG00000046651.1427.5922.6925.14ENCSR000AEF
HepG2OFD1ENSG00000046651.147.7111.699.70ENCSR985KAT
K562OFD1ENSG00000046651.1416.9020.2518.57ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for OFD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • OFD1 RNA is bound by 13 proteins.  







eCLIP assay for OFD1 is not avaliable on ENCORE database.





13 proteins are bound to OFD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1377096413771036+3'-UTR,intron-Distal4.815966.99120K562AQR
chrX1375699113757033+5'-UTR,CDS4.326266.65960HepG2BCLAF1
chrX1375346413753531+5'-UTR,CDS,intron-Proximal5.8533411.02807K562AQR
chrX1375700013757031+5'-UTR,CDS3.166683.50696K562BUD13
chrX1375712013757150+5'-UTR,CDS,intron-Proximal4.359827.53358HepG2BCLAF1
chrX1377325613773274+CDS,intron-Proximal4.4248214.10841K562AQR
chrX1377865213778717+CDS3.293863.34231K562RBM15
chrX1377330113773357+CDS5.4985910.12910HepG2BCLAF1
chrX1377576713775818+CDS,intron-Proximal3.610344.21358HepG2U2AF2
chrX1378630313786339+CDS3.241304.74886HepG2BCLAF1
chrX1376256813762597+CDS4.570615.03746HepG2BCLAF1
chrX1377883813778846+CDS,intron-Proximal4.210576.80869K562AQR
chrX1377577813775851+CDS,intron-Proximal3.460497.59700K562ZNF622
chrX1378529913785399+CDS3.831788.48086K562UCHL5
chrX1377155913771568+CDS,intron-Proximal3.8311513.51777K562AQR
chrX1377469613774712+CDS,intron-Proximal4.530344.34038HepG2BCLAF1
chrX1377830413778353+CDS3.920636.14226K562ZNF622
chrX1378631313786344+CDS,intron-Proximal3.395613.66187K562ZNF622
chrX1377824913778333+CDS3.422065.17903K562UCHL5
chrX1377854913778592+CDS3.259364.44630K562ZNF622
chrX1377868013778739+CDS3.308413.64266HepG2PPIG
chrX1377146613771518+CDS,intron-Proximal4.3701510.30697K562AQR
chrX1377329313773355+CDS3.5099210.82062K562AQR
chrX1377820413778266+CDS,intron-Proximal3.796323.32861HepG2U2AF2
chrX1377841013778461+CDS3.413315.04943K562ZNF622
chrX1377486013774885+CDS3.754074.76554HepG2BCLAF1
chrX1376749913767565+CDS,intron-Proximal4.820454.40745K562SF3B4
chrX1377154013771609+CDS,intron-Proximal4.153906.79646HepG2PRPF8
chrX1377578013775812+CDS3.952035.36555HepG2BCLAF1
chrX1377143113771508+CDS,intron-Proximal4.730168.54916K562SF3B4
chrX1377577913775818+CDS3.657824.76274K562UCHL5
chrX1378526313785405+CDS,intron-Proximal5.078109.08946K562TRA2A
chrX1377327413773293+CDS4.1367313.54812K562AQR
chrX1378540013785493+CDS,intron-Proximal5.8827912.46873K562AQR
chrX1376261813762639+CDS,intron-Proximal4.715075.37137HepG2BCLAF1
chrX1377153813771639+CDS,intron-Proximal3.430286.89918K562PRPF8
chrX1376151813761582+intron-Distal3.457296.75956HepG2U2AF2
chrX1376172213761821+intron-Distal4.499784.54401K562KHSRP
chrX1376206613762121+intron-Distal4.701344.45977HepG2U2AF2
chrX1375833213758431+intron-Distal,intron-Proximal4.069723.48768HepG2KHSRP
chrX1377735313777474+intron-Distal4.568333.91475K562PTBP1
chrX1376148413761573+intron-Distal3.612444.54121HepG2KHSRP
chrX1377158413771636+intron-Proximal3.381163.26275K562BUD13
chrX1377156813771602+intron-Proximal6.0301622.84879K562AQR
chrX1377659313776661+intron-Proximal4.281004.76003K562KHSRP
chrX1377324813773256+intron-Proximal4.9845611.65116K562AQR
chrX1377884613778902+intron-Proximal5.2770411.65116K562AQR
chrX1378635513786401+intron-Proximal3.895799.59600K562AQR
chrX1377160213771652+intron-Proximal6.3451014.81397K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for OFD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for OFD1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of OFD1.  








The Knockdown/knockout RNA-Seq assay for OFD1 is not available on ENCORE database.





68 RBPs can affect the gene expression of OFD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
OFD1ENSG00000046651.101080.55350723.938400.577708.407007.31870HepG2AUH
OFD1ENSG00000046651.10586.50980737.33880-0.330203.427002.61770HepG2DAZAP1
OFD1ENSG00000046651.10451.37920562.86500-0.318402.631301.81580HepG2DDX19B
OFD1ENSG00000046651.10603.09380448.389200.427502.930801.98740HepG2DDX24
OFD1ENSG00000046651.10608.54140443.117800.457602.513401.77150HepG2DDX55
OFD1ENSG00000046651.10810.20030552.878400.551202.423001.50830HepG2DDX59
OFD1ENSG00000046651.10584.12620428.369000.447303.105602.07050HepG2DHX30
OFD1ENSG00000046651.10650.00520421.966700.623203.971402.63170HepG2AGO1
OFD1ENSG00000046651.10763.56090498.338400.615504.715003.95250HepG2EIF2S1
OFD1ENSG00000046651.101101.73340831.230500.406404.712403.96610HepG2ETF1
OFD1ENSG00000046651.10602.52170436.776700.464003.312002.07510HepG2FASTKD2
OFD1ENSG00000046651.10567.73080335.556000.758607.337306.09340HepG2FUBP3
OFD1ENSG00000046651.10818.63640575.686400.507802.775501.65840HepG2FUS
OFD1ENSG00000046651.10785.42430515.458100.607504.667503.81410HepG2G3BP1
OFD1ENSG00000046651.10600.05220910.49580-0.601603.699602.40830HepG2GRSF1
OFD1ENSG00000046651.10848.14490677.579000.323802.572101.66760HepG2HNRNPA2B1
OFD1ENSG00000046651.10378.38950498.75490-0.398502.129101.51160HepG2HNRNPC
OFD1ENSG00000046651.10379.63160522.02420-0.459502.671901.98510HepG2HNRNPK
OFD1ENSG00000046651.10581.34030442.312100.394202.771601.82150HepG2HNRNPM
OFD1ENSG00000046651.10827.38940491.742100.750602.358801.45780HepG2IGF2BP3
OFD1ENSG00000046651.10830.12690527.016100.655404.507503.19760HepG2KHSRP
OFD1ENSG00000046651.10639.18550492.835000.375003.003002.43710HepG2PTBP1
OFD1ENSG00000046651.10459.13110697.90210-0.604105.792104.97160HepG2PUF60
OFD1ENSG00000046651.10985.21140533.746200.8842014.4306013.16130HepG2QKI
OFD1ENSG00000046651.101127.73460794.063600.506005.806504.62150HepG2RBM15
OFD1ENSG00000046651.101082.73820694.744000.640009.003808.19110HepG2RBM22
OFD1ENSG00000046651.10772.95530484.411300.674107.259906.21100HepG2RBM25
OFD1ENSG00000046651.10440.32850609.20260-0.468302.570301.61640HepG2RBM27
OFD1ENSG00000046651.10668.62250548.475600.285701.910201.44180HepG2NELFE
OFD1ENSG00000046651.10640.71330510.834900.326702.134701.58390HepG2RECQL
OFD1ENSG00000046651.101497.64100784.668500.9324026.6132025.47290HepG2SRFBP1
OFD1ENSG00000046651.10665.62390435.714100.611207.801706.95970HepG2SRSF9
OFD1ENSG00000046651.10830.42370681.244400.285602.376101.89320HepG2SSB
OFD1ENSG00000046651.10738.73950491.564200.587603.151501.86140HepG2SUB1
OFD1ENSG00000046651.10813.20590441.133000.882308.253707.18740HepG2SUPV3L1
OFD1ENSG00000046651.10995.31640481.394501.0478021.4558020.10060HepG2TAF15
OFD1ENSG00000046651.10831.27800442.329600.9101013.2205011.42260HepG2TIA1
OFD1ENSG00000046651.10336.38190481.38080-0.517103.777503.21290HepG2TIAL1
OFD1ENSG00000046651.10531.23470681.75860-0.359902.547101.71180HepG2TUFM
OFD1ENSG00000046651.10689.88600548.367400.331101.837901.31500HepG2U2AF1
OFD1ENSG00000046651.10653.58150462.107400.500005.603104.69880HepG2ZC3H8
OFD1ENSG00000046651.10952.831001267.72120-0.411905.470604.71520K562AGGF1
OFD1ENSG00000046651.101070.275601319.10340-0.301602.250201.65810K562AKAP8L
OFD1ENSG00000046651.101307.21560884.784900.563005.478004.23880K562BOP1
OFD1ENSG00000046651.101187.49440881.545200.429704.323702.42720K562CEBPZ
OFD1ENSG00000046651.102536.104002080.321600.285702.999101.98370K562CELF1
OFD1ENSG00000046651.102207.679001449.327700.6070014.3682012.99780K562DDX47
OFD1ENSG00000046651.101175.020101419.56260-0.272802.807801.92690K562DKC1
OFD1ENSG00000046651.102231.622701691.935200.399306.425305.01630K562EIF4G2
OFD1ENSG00000046651.10837.17260578.759600.532504.061602.66290K562FKBP4
OFD1ENSG00000046651.101389.86390957.235500.537905.390504.19000K562FMR1
OFD1ENSG00000046651.101139.20330811.356300.489503.921902.81760K562FTO
OFD1ENSG00000046651.101068.22950785.462400.443502.593401.91270K562G3BP2
OFD1ENSG00000046651.101032.231101408.40680-0.448303.357902.52780K562GRSF1
OFD1ENSG00000046651.10670.15870931.85850-0.475603.511302.10120K562HNRNPK
OFD1ENSG00000046651.10592.52560412.435500.522603.466701.78680K562ILF3
OFD1ENSG00000046651.101106.25240766.971500.528303.460602.40250K562KRR1
OFD1ENSG00000046651.101292.132101568.30170-0.279402.191701.39870K562MBNL1
OFD1ENSG00000046651.102410.049401803.441000.418204.430003.00020K562MSI2
OFD1ENSG00000046651.102399.535701850.677400.374603.582301.86540K562NOL12
OFD1ENSG00000046651.101276.785801094.246000.222502.377201.68120K562NSUN2
OFD1ENSG00000046651.10686.39660872.42790-0.346002.399701.49190K562PCBP2
OFD1ENSG00000046651.10873.885201148.17580-0.393803.192202.30120K562PPIG
OFD1ENSG00000046651.102481.812101963.510700.337903.825002.55030K562PUM1
OFD1ENSG00000046651.101090.38370749.433000.540902.817901.38420K562RAVER1
OFD1ENSG00000046651.101001.432901274.65150-0.348003.572602.91250K562RBM15
OFD1ENSG00000046651.10714.55160913.59110-0.354502.512301.71450K562RBM22
OFD1ENSG00000046651.10622.122401166.80270-0.907303.549502.13580K562SF1
OFD1ENSG00000046651.10636.32170816.77490-0.360202.936602.05440K562SF3B4
OFD1ENSG00000046651.10609.42690933.75140-0.615606.971505.85870K562SRSF1
OFD1ENSG00000046651.101391.73330992.791500.487205.593404.32970K562WDR3
OFD1ENSG00000046651.101364.795901032.382900.402606.212904.99830K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for OFD1 is not available on ENCORE database.





24 RBPs can affect the splicing of OFD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.191000.004200.06597excludedK562SRSF1
SEOFD1ENSG00000046651.10chrX+137693671376948713767545137676521377148613771560-0.281000.000060.00203excludedK562SRSF1
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.309000.000170.00459excludedHepG2U2AF1
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.100000.003740.08441excludedK562AKAP8L
SEOFD1ENSG00000046651.10chrX+1377524913775453137746961377488613775778137759090.430000.000000.00000includedHepG2HNRNPK
SEOFD1ENSG00000046651.10chrX+1377082213770949137693671376948713771486137715600.146000.001160.01598includedHepG2U2AF2
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.154000.000170.00310excludedHepG2U2AF2
SEOFD1ENSG00000046651.10chrX+1377082213770949137693671376948713771486137715600.179000.000340.00489includedK562AQR
SEOFD1ENSG00000046651.10chrX+137804621378056313779203137793301378524513785455-0.065000.000410.00580excludedK562AQR
SEOFD1ENSG00000046651.10chrX+1378186313781974137804621378056313785245137854030.229000.000220.01177includedK562FXR1
SEOFD1ENSG00000046651.10chrX+1378186313781974137804621378056313785245137854550.260000.000090.01328includedHepG2SRSF7
SEOFD1ENSG00000046651.10chrX+1378186313781974137804621378056313785245137853360.122000.000000.00119includedK562DROSHA
SEOFD1ENSG00000046651.10chrX+1378183413781974137804621378056313785245137854030.317000.000150.07906includedHepG2FAM120A
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.137000.000020.00068excludedK562PUS1
SEOFD1ENSG00000046651.10chrX+137714861377156013769367137694871377326913773361-0.078000.002670.03811excludedK562PUS1
SEOFD1ENSG00000046651.10chrX+1378186313781974137804621378056313785245137854030.323000.000000.00313includedHepG2EFTUD2
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.135000.000620.01527excludedK562U2AF1
SEOFD1ENSG00000046651.10chrX+137693671376948713767545137676521377148613771560-0.144000.001440.08296excludedK562HNRNPL
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.155000.000010.00053excludedK562UTP18
SEOFD1ENSG00000046651.10chrX+137542261375441513753366137534651375459613754666-0.064000.001230.04006excludedK562UTP18
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.157000.000010.00023excludedK562U2AF2
SEOFD1ENSG00000046651.10chrX+137764551377656713775778137759091377823313778839-0.150000.001970.03452excludedK562U2AF2
SEOFD1ENSG00000046651.10chrX+1375422613754415137533661375346513754596137546660.158000.000280.01405includedK562TARDBP
SEOFD1ENSG00000046651.10chrX+137693671376948713767545137676521377148613771560-0.334000.000020.00147excludedK562HNRNPU
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.203000.000000.00000excludedK562RBM15
SEOFD1ENSG00000046651.10chrX+137714861377156013769367137694871377469613774886-0.366000.001250.03233excludedK562RBM15
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.174000.000000.00002excludedK562AGGF1
SEOFD1ENSG00000046651.10chrX+1377082213770949137693671376948713771486137715600.141000.000410.04731includedK562CPSF6
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785403-0.117000.000000.00024excludedK562SF3B1
SEOFD1ENSG00000046651.10chrX+1377524913775453137746961377488613775778137759090.213000.000000.00000includedK562HNRNPK
SEOFD1ENSG00000046651.10chrX+1375428613754415137533661375346513754596137546660.157000.000440.02422includedK562HNRNPK
SEOFD1ENSG00000046651.10chrX+137818631378197413780462137805631378524513785455-0.248000.000480.01027excludedK562HNRNPC
SEOFD1ENSG00000046651.10chrX+137693671376948713767545137676521377148613771560-0.166000.002640.04239excludedK562HNRNPC
A3SSOFD1ENSG00000046651.10chrX+1377082213771560137714861377156013769367137694870.149000.000730.02065longerHepG2U2AF2
A3SSOFD1ENSG00000046651.10chrX+1377082213771560137714861377156013769320137694870.182000.000250.00199longerK562AQR
A3SSOFD1ENSG00000046651.10chrX+137708221377156013771486137715601376936713769487-0.117000.000340.05733shorterK562PTBP1
MXEOFD1ENSG00000046651.10chrX+1376936713769487137714861377156013767545137676521377326913773361-0.189000.004740.069532includedHepG2U2AF1
MXEOFD1ENSG00000046651.10chrX+13770822137715601377322913773361137693671376948713774696137748860.174000.002520.020191includedK562AQR
MXEOFD1ENSG00000046651.10chrX+13781863137819741378524513785336137804621378056313786172137863430.256000.002480.062811includedHepG2HNRNPU
MXEOFD1ENSG00000046651.10chrX+13781863137819741378524513785403137804621378056313786172137863430.278000.000460.037751includedHepG2G3BP1
MXEOFD1ENSG00000046651.10chrX+1378186313781974137852451378545513780462137805631378617213786343-0.358000.000500.081952includedHepG2SUB1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for OFD1 is not avaliable on ENCORE database.