OFD1

General Information

Gene Name : OFD1
Gene ID : ENSG00000046651.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: OFD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	OFD1	ENSG00000046651.14	27.59	22.69	25.14	ENCSR000AEF
HepG2	OFD1	ENSG00000046651.14	7.71	11.69	9.70	ENCSR985KAT
K562	OFD1	ENSG00000046651.14	16.90	20.25	18.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for OFD1 is not avaliable on ENCORE database.

Proteins bound to RNA

OFD1 RNA is bound by 13 proteins.

CanvasJS.com

eCLIP assay for OFD1 is not avaliable on ENCORE database.

13 proteins are bound to OFD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	13771568	13771602	+	intron-Proximal	6.03016	22.84879	K562	AQR
chrX	13771602	13771652	+	intron-Proximal	6.34510	14.81397	K562	AQR
chrX	13773256	13773274	+	CDS,intron-Proximal	4.42482	14.10841	K562	AQR
chrX	13773274	13773293	+	CDS	4.13673	13.54812	K562	AQR
chrX	13771559	13771568	+	CDS,intron-Proximal	3.83115	13.51777	K562	AQR
chrX	13785400	13785493	+	CDS,intron-Proximal	5.88279	12.46873	K562	AQR
chrX	13773248	13773256	+	intron-Proximal	4.98456	11.65116	K562	AQR
chrX	13778846	13778902	+	intron-Proximal	5.27704	11.65116	K562	AQR
chrX	13753464	13753531	+	5'-UTR,CDS,intron-Proximal	5.85334	11.02807	K562	AQR
chrX	13773293	13773355	+	CDS	3.50992	10.82062	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 49 entries

eCLIP assay for OFD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for OFD1 is not available on ENCORE database.
68 RBPs can affect the levels of OFD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for OFD1 is not available on ENCORE database.

68 RBPs can affect the gene expression of OFD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
OFD1	ENSG00000046651.10	1497.64100	784.66850	0.93240	26.61320	25.47290	HepG2	SRFBP1
OFD1	ENSG00000046651.10	995.31640	481.39450	1.04780	21.45580	20.10060	HepG2	TAF15
OFD1	ENSG00000046651.10	985.21140	533.74620	0.88420	14.43060	13.16130	HepG2	QKI
OFD1	ENSG00000046651.10	2207.67900	1449.32770	0.60700	14.36820	12.99780	K562	DDX47
OFD1	ENSG00000046651.10	831.27800	442.32960	0.91010	13.22050	11.42260	HepG2	TIA1
OFD1	ENSG00000046651.10	1082.73820	694.74400	0.64000	9.00380	8.19110	HepG2	RBM22
OFD1	ENSG00000046651.10	1080.55350	723.93840	0.57770	8.40700	7.31870	HepG2	AUH
OFD1	ENSG00000046651.10	813.20590	441.13300	0.88230	8.25370	7.18740	HepG2	SUPV3L1
OFD1	ENSG00000046651.10	665.62390	435.71410	0.61120	7.80170	6.95970	HepG2	SRSF9
OFD1	ENSG00000046651.10	772.95530	484.41130	0.67410	7.25990	6.21100	HepG2	RBM25
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 72 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for OFD1 is not available on ENCORE database.

24 RBPs can affect the splicing of OFD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	OFD1	ENSG00000046651.10	chrX	+	13775249	13775453	13774696	13774886	13775778	13775909	0.43000	0.00000	0.00000	included	HepG2	HNRNPK
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785336	0.12200	0.00000	0.00119	included	K562	DROSHA
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	0.32300	0.00000	0.00313	included	HepG2	EFTUD2
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	-0.20300	0.00000	0.00000	excluded	K562	RBM15
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	-0.17400	0.00000	0.00002	excluded	K562	AGGF1
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	-0.11700	0.00000	0.00024	excluded	K562	SF3B1
SE	OFD1	ENSG00000046651.10	chrX	+	13775249	13775453	13774696	13774886	13775778	13775909	0.21300	0.00000	0.00000	included	K562	HNRNPK
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	-0.15500	0.00001	0.00053	excluded	K562	UTP18
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	-0.15700	0.00001	0.00023	excluded	K562	U2AF2
SE	OFD1	ENSG00000046651.10	chrX	+	13781863	13781974	13780462	13780563	13785245	13785403	-0.13700	0.00002	0.00068	excluded	K562	PUS1

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

OFD1

General Information

Functions

Localization

Domains (AlphaFold: OFD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for OFD1 is not avaliable on ENCORE database.

13 proteins are bound to OFD1 RNA:

eCLIP assay for OFD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for OFD1 is not available on ENCORE database.

68 RBPs can affect the gene expression of OFD1 :

The Knockdown/knockout RNA-Seq assay for OFD1 is not available on ENCORE database.

24 RBPs can affect the splicing of OFD1 :

The Knockdown/knockout RNA-Seq assay for OFD1 is not avaliable on ENCORE database.