NFRKB

General Information

Gene Name       : NFRKB
Gene ID             : ENSG00000170322.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: NFRKB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NFRKBENSG00000170322.147.169.328.24ENCSR000AEF
HepG2NFRKBENSG00000170322.1417.2312.5914.91ENCSR985KAT
K562NFRKBENSG00000170322.1424.5622.5023.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for NFRKB is not avaliable on ENCORE database.



Proteins bound to RNA
  • NFRKB RNA is bound by 29 proteins.  







eCLIP assay for NFRKB is not avaliable on ENCORE database.





29 proteins are bound to NFRKB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11129762745129762770-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.308413.05161HepG2PPIG
chr11129756149129756213-3'-UTR,CDS,intron-Distal,intron-Proximal3.234824.83230K562AQR
chr11129762763129762814-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.861254.59518HepG2SF3B4
chr11129755469129755501-3'-UTR,CDS,intron-Distal3.660684.41267HepG2PPIG
chr11129762741129762833-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.7197010.79618K562SF3B4
chr11129754600129754666-3'-UTR,CDS,intron-Distal,intron-Proximal3.723466.43995K562PRPF8
chr11129762729129762806-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.917983.20724K562SMNDC1
chr11129762738129762829-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.751243.09957HepG2AQR
chr11129756210129756236-3'-UTR,CDS,intron-Distal,intron-Proximal4.119903.15006K562RBM15
chr11129733805129733913-3'-UTR,intron-Distal3.044714.77070HepG2ZC3H11A
chr11129754613129754641-3'-UTR,CDS,intron-Distal,intron-Proximal3.453534.38107K562AQR
chr11129755284129755332-3'-UTR,CDS,intron-Distal,intron-Proximal3.085044.38107K562AQR
chr11129755486129755504-3'-UTR,CDS,intron-Distal3.849623.15006K562RBM15
chr11129733819129733932-3'-UTR,intron-Distal4.363195.46178K562ZC3H11A
chr11129734428129734524-3'-UTR,intron-Distal,intron-Proximal3.113354.88837HepG2PABPN1
chr11129755340129755354-3'-UTR,CDS,intron-Distal,intron-Proximal3.963303.32022K562UCHL5
chr11129754693129754748-3'-UTR,CDS,intron-Distal,intron-Proximal3.9177213.44258K562RBM15
chr11129764185129764278-5'-UTR,intron-Distal,intron-Proximal3.622066.80241K562KHSRP
chr11129765351129765446-5'-UTR,intron-Distal3.856904.27210HepG2NCBP2
chr11129765360129765417-5'-UTR,intron-Distal4.9245116.79021HepG2PRPF8
chr11129765359129765431-5'-UTR,intron-Distal3.042183.13218K562PRPF8
chr11129756296129756340-CDS,intron-Distal,intron-Proximal4.130083.51664K562RBM15
chr11129744435129744520-CDS,intron-Distal,intron-Proximal3.082956.55915K562BUD13
chr11129752363129752467-CDS,intron-Distal3.248108.39218K562UCHL5
chr11129746696129746730-CDS,intron-Distal3.623684.13746HepG2PPIG
chr11129758645129758691-CDS,intron-Distal,intron-Proximal3.582254.77136HepG2PPIG
chr11129751706129751747-CDS,intron-Distal3.326265.40132HepG2BCLAF1
chr11129734859129734914-CDS,intron-Distal,intron-Proximal4.143794.56106HepG2EIF3H
chr11129746780129746826-CDS,intron-Distal,intron-Proximal4.030164.49024K562AQR
chr11129762661129762745-CDS,intron-Distal5.0648312.29445HepG2PPIG
chr11129751681129751736-CDS,intron-Distal3.789118.04012K562ZNF622
chr11129752277129752347-CDS,intron-Distal,intron-Proximal4.323596.39176K562AQR
chr11129752391129752460-CDS,intron-Distal4.493327.39346K562DDX24
chr11129751981129752041-CDS,intron-Distal5.900218.32974K562DDX24
chr11129746576129746641-CDS,intron-Distal,intron-Proximal4.016996.04280HepG2PRPF8
chr11129744417129744512-CDS,intron-Distal,intron-Proximal3.619248.93089K562ZNF622
chr11129743800129743837-CDS,intron-Distal,intron-Proximal4.655754.97342HepG2PPIG
chr11129746759129746804-CDS,intron-Distal,intron-Proximal4.762775.51162HepG2U2AF2
chr11129751721129751742-CDS,intron-Distal4.144583.71613K562UCHL5
chr11129752967129753024-CDS,intron-Distal,intron-Proximal5.939929.41643K562AQR
chr11129758487129758523-CDS,intron-Distal,intron-Proximal4.115794.15208K562RBM15
chr11129745253129745294-CDS,intron-Distal3.438945.58370HepG2PPIG
chr11129758637129758690-CDS,intron-Distal3.068544.63375HepG2GRWD1
chr11129752972129753058-CDS,intron-Distal,intron-Proximal3.285536.89918K562PRPF8
chr11129752968129753044-CDS,intron-Distal,intron-Proximal4.1976911.17766HepG2PRPF8
chr11129751736129751748-CDS,intron-Distal4.173684.08604HepG2PPIG
chr11129744646129744700-CDS,intron-Distal,intron-Proximal3.200815.24055HepG2PRPF8
chr11129762599129762743-CDS,intron-Distal,intron-Proximal4.743598.07118HepG2SRSF1
chr11129762643129762673-CDS,intron-Distal3.789115.47804K562ZNF622
chr11129762621129762689-CDS,intron-Distal3.649725.70592K562SRSF1
chr11129746758129746868-CDS,intron-Distal,intron-Proximal3.526533.32027K562SMNDC1
chr11129744414129744523-CDS,intron-Distal,intron-Proximal5.5706137.33111K562SF3B4
chr11129751986129752013-CDS,intron-Distal3.331783.73423K562UCHL5
chr11129758636129758685-CDS,intron-Distal4.088878.79898HepG2BCLAF1
chr11129746641129746685-CDS,intron-Distal3.661853.02250K562YBX3
chr11129762608129762661-CDS,intron-Distal,intron-Proximal4.627127.49899HepG2PPIG
chr11129747157129747221-CDS,intron-Distal,intron-Proximal3.290346.69302K562AQR
chr11129746753129746852-CDS,intron-Distal,intron-Proximal4.087019.01749K562SF3B4
chr11129744169129744221-CDS,intron-Distal3.363147.66871HepG2BCLAF1
chr11129744458129744559-CDS,intron-Distal,intron-Proximal5.5635812.99258K562EFTUD2
chr11129762689129762743-CDS,intron-Distal4.315004.99251K562SRSF1
chr11129748372129748402-CDS,intron-Distal3.261623.71797HepG2BCLAF1
chr11129751980129752038-CDS,intron-Distal,intron-Proximal4.0779212.21730HepG2BCLAF1
chr11129740006129740070-CDS,intron-Distal3.433923.93112K562RBM15
chr11129758630129758679-CDS,intron-Distal3.954746.22817K562DDX24
chr11129753009129753054-CDS,intron-Distal,intron-Proximal3.223456.00907HepG2PPIG
chr11129740140129740188-CDS,intron-Distal,intron-Proximal3.810004.57435K562SF3B4
chr11129752352129752386-CDS,intron-Distal4.291076.84316HepG2BCLAF1
chr11129744421129744514-CDS,intron-Distal,intron-Proximal4.175445.31925K562U2AF2
chr11129744403129744522-CDS,intron-Distal,intron-Proximal4.028519.86697K562DDX24
chr11129751980129752015-CDS,intron-Distal,intron-Proximal4.884416.46301HepG2PPIG
chr11129752411129752480-CDS,intron-Distal4.1801712.82496HepG2BCLAF1
chr11129758534129758624-CDS,intron-Distal,intron-Proximal4.4071512.74895K562ZNF622
chr11129746762129746789-CDS,intron-Distal3.331594.85828HepG2BCLAF1
chr11129744640129744757-CDS,intron-Distal,intron-Proximal4.291859.73062HepG2GRWD1
chr11129748172129748235-CDS,intron-Distal,intron-Proximal4.864995.35117HepG2PRPF8
chr11129751342129751351-CDS,intron-Distal3.930564.51739HepG2BCLAF1
chr11129740116129740166-CDS,intron-Distal,intron-Proximal4.129543.33054K562U2AF1
chr11129752518129752578-CDS,intron-Distal,intron-Proximal3.739725.85504K562SF3B4
chr11129758624129758687-CDS,intron-Distal3.780469.42776K562ZNF622
chr11129747184129747289-CDS,intron-Distal,intron-Proximal3.359793.90373HepG2AQR
chr11129739465129739498-CDS,intron-Distal3.838363.05716HepG2PABPN1
chr11129741424129741551-intron-Distal3.777114.87260HepG2HNRNPM
chr11129747294129747337-intron-Distal,intron-Proximal5.107254.90235K562SF3B4
chr11129744517129744583-intron-Distal,intron-Proximal3.545394.23459K562PRPF8
chr11129765129129765218-intron-Distal3.681104.25110K562CSTF2T
chr11129754583129754613-intron-Distal,intron-Proximal4.786598.52787K562AQR
chr11129765005129765104-intron-Distal3.050724.07440K562PRPF8
chr11129765143129765226-intron-Distal3.257183.60033HepG2EFTUD2
chr11129765296129765385-intron-Distal3.293474.01721HepG2PRPF4
chr11129753918129753942-intron-Distal,intron-Proximal3.446458.38394K562AQR
chr11129742692129742761-intron-Distal,intron-Proximal3.383113.04831K562RBM15
chr11129765117129765223-intron-Distal5.024579.40065K562EFTUD2
chr11129744547129744618-intron-Distal,intron-Proximal4.286635.31925K562U2AF2
chr11129765283129765346-intron-Distal4.954975.44892HepG2FAM120A
chr11129765145129765228-intron-Distal5.371089.20205K562GTF2F1
chr11129743552129743639-intron-Distal,intron-Proximal5.188274.13847K562AQR
chr11129750611129750679-intron-Distal3.386093.39857HepG2HNRNPM
chr11129765244129765340-intron-Distal3.100613.25653K562CSTF2T
chr11129765141129765256-intron-Distal4.5864615.09924HepG2PRPF4
chr11129748075129748186-intron-Distal,intron-Proximal4.316076.40042K562EFTUD2
chr11129742701129742778-intron-Distal,intron-Proximal4.027318.27931K562AQR
chr11129748013129748131-intron-Distal,intron-Proximal3.091954.65130K562PRPF8
chr11129753942129753965-intron-Distal,intron-Proximal3.518345.35619K562AQR
chr11129744548129744624-intron-Distal,intron-Proximal4.136147.67375HepG2U2AF2
chr11129735686129735746-intron-Distal,intron-Proximal3.839684.86737HepG2RBM22
chr11129765032129765142-intron-Distal4.803525.31505K562HNRNPM
chr11129747296129747333-intron-Distal,intron-Proximal4.674116.66303HepG2SF3B4
chr11129765145129765286-intron-Distal5.3296010.15972HepG2GTF2F1
chr11129736780129736848-intron-Distal3.471416.05428K562RBFOX2
chr11129765045129765107-intron-Distal4.099697.43035HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for NFRKB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for NFRKB is not available on ENCORE database.

  • 54 RBPs can affect the levels of NFRKB.  








The Knockdown/knockout RNA-Seq assay for NFRKB is not available on ENCORE database.





54 RBPs can affect the gene expression of NFRKB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
NFRKBENSG00000170322.10796.577301093.76760-0.457402.931402.38580HepG2AKAP1
NFRKBENSG00000170322.10667.05480904.95170-0.440003.017502.19780HepG2ASCC1
NFRKBENSG00000170322.10645.70950829.12100-0.360702.705401.94230HepG2CALR
NFRKBENSG00000170322.10936.559101115.57080-0.252302.264701.64190HepG2DKC1
NFRKBENSG00000170322.101299.53990865.131700.586905.397304.58640HepG2EIF2S1
NFRKBENSG00000170322.101248.52280955.953100.385102.400701.80420HepG2EIF4A3
NFRKBENSG00000170322.10917.086201139.40660-0.313202.429201.64830HepG2EWSR1
NFRKBENSG00000170322.101215.08270674.424600.8492010.990609.47010HepG2FUBP3
NFRKBENSG00000170322.10910.021101169.35560-0.361703.947002.86260HepG2HNRNPA2B1
NFRKBENSG00000170322.101242.43500816.718300.605206.712405.67130HepG2HNRNPC
NFRKBENSG00000170322.101472.27420906.585100.699408.544007.36910HepG2HNRNPK
NFRKBENSG00000170322.101273.06850914.981800.476402.917901.88370HepG2KHSRP
NFRKBENSG00000170322.101295.29320993.373500.382802.461201.86270HepG2NCBP2
NFRKBENSG00000170322.101215.04460884.444900.458103.413302.61630HepG2PABPC4
NFRKBENSG00000170322.101129.87820946.814800.254902.385301.81280HepG2PCBP1
NFRKBENSG00000170322.10871.20970723.634200.267702.055201.41150HepG2PPIL4
NFRKBENSG00000170322.101188.56780980.002500.278302.691601.92680HepG2PRPF4
NFRKBENSG00000170322.10874.713201204.38420-0.461404.409103.67720HepG2PUF60
NFRKBENSG00000170322.10865.976101187.67490-0.455706.990706.08860HepG2PUS1
NFRKBENSG00000170322.101632.823801043.382600.6460011.029609.90150HepG2QKI
NFRKBENSG00000170322.10984.188501623.19910-0.721802.051201.36230HepG2RPS3A
NFRKBENSG00000170322.10943.67650722.522600.385104.576603.78240HepG2SAFB2
NFRKBENSG00000170322.101421.497001154.858900.299604.129203.29600HepG2SLBP
NFRKBENSG00000170322.101096.67630851.772100.364504.583603.90620HepG2SRSF9
NFRKBENSG00000170322.10427.72890816.13780-0.932109.018607.91240HepG2SUPV3L1
NFRKBENSG00000170322.101380.79280941.095600.553008.717807.81250HepG2TAF15
NFRKBENSG00000170322.101223.36260864.688300.500505.924504.71090HepG2TIA1
NFRKBENSG00000170322.10631.07050788.39150-0.321102.394601.92350HepG2TIAL1
NFRKBENSG00000170322.10927.147101230.05850-0.407905.842104.88710HepG2UPF1
NFRKBENSG00000170322.10761.51410967.16070-0.344903.972203.19150HepG2ZC3H8
NFRKBENSG00000170322.102426.205801736.378500.4825010.208809.20840K562AGGF1
NFRKBENSG00000170322.102439.079601806.788200.432804.196503.38950K562AKAP8L
NFRKBENSG00000170322.101107.646901401.33110-0.339302.413201.60450K562BOP1
NFRKBENSG00000170322.102518.943102145.482600.231402.771102.12020K562DDX47
NFRKBENSG00000170322.101338.772501951.96120-0.5440010.140408.89550K562EIF2S2
NFRKBENSG00000170322.101119.15700838.736400.416004.799903.76640K562EIF3G
NFRKBENSG00000170322.101007.182801279.77460-0.345602.647001.84490K562EIF4A3
NFRKBENSG00000170322.101614.701501330.916400.278703.026602.39700K562FXR1
NFRKBENSG00000170322.10628.75090871.87380-0.471602.778602.06870K562G3BP2
NFRKBENSG00000170322.102019.851302601.09010-0.364903.889302.99800K562GRSF1
NFRKBENSG00000170322.102120.653201282.945600.724903.475702.06340K562HNRNPA2B1
NFRKBENSG00000170322.101765.595801226.318900.525706.550205.67050K562HNRNPC
NFRKBENSG00000170322.101581.406802074.86500-0.391803.568602.66830K562HSPD1
NFRKBENSG00000170322.102487.408301917.427200.375403.805902.81620K562KIF1C
NFRKBENSG00000170322.101933.556301505.599300.360802.115601.36700K562NAA15
NFRKBENSG00000170322.101304.931501562.76980-0.260102.119301.41890K562POLR2G
NFRKBENSG00000170322.101341.617101737.33420-0.372903.091102.21580K562PPIG
NFRKBENSG00000170322.102169.295201333.900300.701502.964301.44230K562PPP1R8
NFRKBENSG00000170322.102788.271703326.22490-0.254503.034402.03160K562PUM2
NFRKBENSG00000170322.102527.454101791.783900.496205.793805.04330K562PUS1
NFRKBENSG00000170322.102347.123701745.868400.426806.492105.60950K562RBM15
NFRKBENSG00000170322.101825.582001392.542800.390503.932202.63050K562SAFB
NFRKBENSG00000170322.101709.321801026.096100.736203.077901.78780K562SF1
NFRKBENSG00000170322.101037.120401352.97320-0.383502.573401.63760K562SF3B1
NFRKBENSG00000170322.102012.578401250.814000.686102.828401.50520K562SFPQ
NFRKBENSG00000170322.101873.232701178.527300.668402.680601.47970K562SNRNP200
NFRKBENSG00000170322.10919.161301196.90550-0.380902.404801.46100K562SUPV3L1
NFRKBENSG00000170322.101966.907901567.532800.327302.309901.55940K562SYNCRIP
NFRKBENSG00000170322.102248.885601755.358400.357306.547205.29690K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for NFRKB is not available on ENCORE database.





13 RBPs can affect the splicing of NFRKB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SENFRKBENSG00000170322.10chr11-129763191129763280129762609129762765129764253129764333-0.623000.000000.00000excludedK562SRSF1
SENFRKBENSG00000170322.10chr11-1297548801297549901297546391297547411297553291297555040.311000.001320.03923includedK562AKAP8L
SENFRKBENSG00000170322.10chr11-1297548801297549901297546391297547411297553291297555040.176000.011320.08956includedK562AQR
SENFRKBENSG00000170322.10chr11-129747423129747568129747219129747280129748203129748250-0.226000.000460.06583excludedK562DROSHA
SENFRKBENSG00000170322.10chr11-1297548801297549901297546391297547771297553291297555040.158000.005400.06602includedK562PUS1
SENFRKBENSG00000170322.10chr11-129754880129754990129754639129754741129755329129755504-0.305000.000150.02275excludedHepG2LARP4
SENFRKBENSG00000170322.10chr11-1297548801297549901297546391297547411297553291297555040.302000.001540.03789includedK562RBM15
SENFRKBENSG00000170322.10chr11-1297548801297549901297546391297547771297553291297555040.221000.000410.01351includedK562AGGF1
SENFRKBENSG00000170322.10chr11-1297631911297632801297626091297627651297642531297643330.542000.000000.00017includedHepG2HNRNPC
SENFRKBENSG00000170322.10chr11-1297631911297632801297626091297627651297642531297643330.303000.007070.09059includedK562HNRNPC
A3SSNFRKBENSG00000170322.10chr11-129754639129754777129754639129754741129755329129755504-0.320000.001080.09167shorterHepG2SRSF1
A3SSNFRKBENSG00000170322.10chr11-1297443951297445961297443951297444751297446871297448110.161000.000000.00043longerK562HNRNPUL1
A3SSNFRKBENSG00000170322.10chr11-1297546391297548301297546391297547411297553291297555040.246000.008180.04448longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297399871297401761297399871297401561297427781297429580.270000.000000.00000longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297348601297350881297348601297349961297357711297358780.094000.000000.00000longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297642531297643491297642531297643331297653901297654520.152000.006220.03498longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297530161297531611297530161297531011297539641297540650.134000.002630.01639longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297626091297627831297626091297627651297642531297643490.351000.001240.00842longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297427781297430161297427781297429911297436391297439100.182000.000000.00003longerK562AQR
A3SSNFRKBENSG00000170322.10chr11-1297443951297445961297443951297444751297446871297448110.280000.000000.00393longerHepG2TIA1
A3SSNFRKBENSG00000170322.10chr11-129754639129754777129754639129754741129755329129755504-0.466000.000090.07476shorterHepG2EFTUD2
A3SSNFRKBENSG00000170322.10chr11-129744395129744596129744395129744475129744687129744811-0.138000.000100.03910shorterHepG2TBRG4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for NFRKB is not avaliable on ENCORE database.