MRPS17

General Information

Gene Name       : MRPS17
Gene ID             : ENSG00000239789.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MRPS17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MRPS17ENSG00000239789.516.5517.5317.04ENCSR000AEF
HepG2MRPS17ENSG00000239789.515.2119.3617.29ENCSR985KAT
K562MRPS17ENSG00000239789.525.9422.8724.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MRPS17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MRPS17 RNA is bound by 5 proteins.  







eCLIP assay for MRPS17 is not avaliable on ENCORE database.





5 proteins are bound to MRPS17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr75601961056019716+5'-UTR,intron-Distal,intron-Proximal4.964545.17615K562AQR
chr75601958056019623+5'-UTR,intron-Distal3.973915.82148K562DDX3X
chr75602087156020888+5'-UTR,CDS,intron-Distal,intron-Proximal4.092726.02664K562DDX3X
chr75602088856020955+CDS,intron-Distal3.5785613.39743K562DDX3X
chr75602100556021082+CDS,intron-Distal,intron-Proximal3.267203.20886K562PRPF8
chr75599191055992020+intron-Distal5.3328510.31535HepG2QKI
chr75599931355999400+intron-Distal3.922343.03891HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MRPS17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MRPS17 is not available on ENCORE database.

  • 66 RBPs can affect the levels of MRPS17.  








The Knockdown/knockout RNA-Seq assay for MRPS17 is not available on ENCORE database.





66 RBPs can affect the gene expression of MRPS17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MRPS17ENSG00000239789.1184.20620320.41140-0.798605.158804.24550HepG2CPSF6
MRPS17ENSG00000249773.30.0000011.98270-99999.999993.450402.15560HepG2DDX1
MRPS17ENSG00000239789.1269.37580401.95670-0.577403.258402.61790HepG2EIF2S1
MRPS17ENSG00000239789.1197.52910288.90570-0.548502.811001.65880HepG2FASTKD2
MRPS17ENSG00000239789.1229.89080363.19390-0.659803.589302.86950HepG2GPKOW
MRPS17ENSG00000249773.30.0000013.19520-99999.999993.620802.83560HepG2HNRNPC
MRPS17ENSG00000239789.1339.60930460.55690-0.439503.287002.50990HepG2HNRNPF
MRPS17ENSG00000239789.1152.12470346.60420-1.188009.443608.35830HepG2HNRNPLL
MRPS17ENSG00000249773.30.0000011.78130-99999.999992.286601.62620HepG2IGF2BP1
MRPS17ENSG00000239789.1633.07350450.877100.489502.759302.12930HepG2MATR3
MRPS17ENSG00000239789.1384.80860503.68590-0.388402.708401.95320HepG2NOL12
MRPS17ENSG00000239789.1293.57620410.96180-0.485302.502501.81280HepG2PABPC4
MRPS17ENSG00000239789.1221.02480300.12300-0.441302.415201.68640HepG2PRPF4
MRPS17ENSG00000239789.1296.40670423.28040-0.514003.556802.95360HepG2PTBP1
MRPS17ENSG00000239789.1346.34320480.79870-0.473203.117302.49070HepG2PUF60
MRPS17ENSG00000239789.1293.43710458.41910-0.643605.213404.39600HepG2QKI
MRPS17ENSG00000239789.1288.59240416.04630-0.527703.385602.64570HepG2RBM25
MRPS17ENSG00000239789.1365.67750471.06890-0.365402.218301.72300HepG2NELFE
MRPS17ENSG00000239789.1311.16420438.73950-0.495703.599702.90980HepG2RECQL
MRPS17ENSG00000249773.30.0000011.67200-99999.999993.508402.79860HepG2SAFB2
MRPS17ENSG00000239789.1324.97180440.68610-0.439402.940002.33450HepG2SF3B4
MRPS17ENSG00000239789.1355.03530460.97830-0.376702.781502.07810HepG2SLBP
MRPS17ENSG00000239789.1642.49600525.781300.289102.034501.58440HepG2SRFBP1
MRPS17ENSG00000249773.30.0000011.74960-99999.999992.288501.65090HepG2SRSF7
MRPS17ENSG00000239789.1294.60830374.22130-0.345102.044601.55570HepG2SRSF9
MRPS17ENSG00000239789.1365.60650456.49230-0.320302.065401.60600HepG2SSB
MRPS17ENSG00000239789.1276.67150413.45390-0.579604.436203.75180HepG2TAF15
MRPS17ENSG00000239789.1282.33840379.90370-0.428202.444201.65560HepG2TIA1
MRPS17ENSG00000249773.31.3215012.85110-3.281702.538801.99400HepG2TRIM56
MRPS17ENSG00000239789.1295.14240176.436700.742204.770903.76870HepG2UCHL5
MRPS17ENSG00000239789.1463.17930294.494500.653206.009405.18420HepG2UTP3
MRPS17ENSG00000239789.1227.39740296.17720-0.381201.992401.40830HepG2ZC3H8
MRPS17ENSG00000239789.1537.64620406.116300.404702.445801.34210K562AARS
MRPS17ENSG00000239789.1780.326201065.18420-0.449003.740002.29320K562ABCF1
MRPS17ENSG00000239789.1560.880901022.34880-0.866103.225302.60100K562AQR
MRPS17ENSG00000239789.1468.10480619.74830-0.404903.140202.12070K562BCLAF1
MRPS17ENSG00000239789.1394.67400560.69260-0.506502.933002.03700K562BOP1
MRPS17ENSG00000239789.1518.26020741.91460-0.517603.604701.93770K562BUD13
MRPS17ENSG00000239789.1350.60280596.21060-0.766004.357103.37420K562CPSF6
MRPS17ENSG00000239789.1353.76550470.17160-0.410402.680001.63990K562CSTF2
MRPS17ENSG00000239789.11240.98510819.931000.5978010.489609.31430K562DDX47
MRPS17ENSG00000239789.1346.57000472.04340-0.445802.322601.48660K562EFTUD2
MRPS17ENSG00000239789.1465.09770936.84080-1.0103012.8510011.47560K562EIF2S2
MRPS17ENSG00000239789.1638.15990417.927800.610605.762704.62780K562EIF3G
MRPS17ENSG00000239789.1278.04960447.11340-0.685305.720603.32680K562FASTKD2
MRPS17ENSG00000239789.1456.46490606.56520-0.410202.075101.33010K562FMR1
MRPS17ENSG00000239789.1277.29040369.45810-0.414002.629201.32440K562FUS
MRPS17ENSG00000239789.1773.02880279.823601.4659032.3203030.38270K562FXR1
MRPS17ENSG00000239789.1398.17730569.26130-0.515703.087402.25100K562GPKOW
MRPS17ENSG00000239789.1274.02450444.54350-0.698005.190004.39570K562HNRNPC
MRPS17ENSG00000249773.312.065200.550904.452702.649802.06350K562HNRNPC
MRPS17ENSG00000239789.1969.82970629.722100.622905.232703.90530K562HNRNPM
MRPS17ENSG00000239789.1348.28610486.00780-0.480702.222901.39670K562KRR1
MRPS17ENSG00000239789.1465.27640689.81590-0.568107.448306.30790K562NSUN2
MRPS17ENSG00000239789.1457.15350606.97200-0.409002.281801.52660K562PCBP3
MRPS17ENSG00000249773.313.915100.0000099999.999903.518502.58020K562PCBP3
MRPS17ENSG00000249773.37.171100.0000099999.999902.146301.44130K562POLR2G
MRPS17ENSG00000239789.1627.14840459.349700.449102.949802.17710K562PRPF8
MRPS17ENSG00000239789.1731.75190399.470100.8732012.0934010.75790K562PTBP1
MRPS17ENSG00000239789.11552.514201291.469800.265502.766201.69860K562PUM1
MRPS17ENSG00000249773.30.0000014.75180-99999.999994.803502.35460K562QKI
MRPS17ENSG00000249773.30.0000012.60080-99999.999993.167401.63130K562RAVER1
MRPS17ENSG00000239789.1566.96490403.181200.491703.330602.11880K562NELFE
MRPS17ENSG00000239789.1303.31970199.742300.602602.601101.63220K562RPS3
MRPS17ENSG00000249773.314.503300.0000099999.999904.433101.38710K562RTF1
MRPS17ENSG00000239789.1538.08380680.66210-0.339102.652101.85320K562SF3A3
MRPS17ENSG00000239789.1248.47740344.62960-0.471902.267401.36030K562SRFBP1
MRPS17ENSG00000239789.1562.78090391.591700.523104.040403.19210K562SRSF1
MRPS17ENSG00000239789.1303.36180444.89670-0.552402.838801.80900K562SUPV3L1
MRPS17ENSG00000239789.1700.39350466.977800.584705.819504.62080K562SYNCRIP
MRPS17ENSG00000239789.1277.71280383.35920-0.465102.171801.35260K562TIAL1
MRPS17ENSG00000239789.1270.80370375.06160-0.469902.486801.46400K562TRA2A
MRPS17ENSG00000239789.1284.01380407.15710-0.519602.960101.97530K562TRIM56
MRPS17ENSG00000239789.1407.86600314.390500.375402.176701.46480K562U2AF2
MRPS17ENSG00000249773.31.6124013.20100-3.033402.374601.63050K562U2AF2
MRPS17ENSG00000239789.1342.82240470.79490-0.457602.355701.42450K562UCHL5
MRPS17ENSG00000239789.1450.63560731.42580-0.6988010.059608.80050K562UPF1
MRPS17ENSG00000239789.1383.39120625.85890-0.707007.344605.87920K562WDR3
MRPS17ENSG00000239789.1662.99640398.278500.735103.436001.62800K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MRPS17 is not available on ENCORE database.





3 RBPs can affect the splicing of MRPS17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMRPS17ENSG00000239789.1chr7+560208715602101156019511560196235602260156024192-0.123000.000130.05135excludedK562IGF2BP2
SEMRPS17ENSG00000239789.1chr7+560208715602101156019511560196235602260156024192-0.091000.003210.07550excludedK562AKAP8L
SEMRPS17ENSG00000239789.1chr7+560208715602101156019511560196235602260156024192-0.084000.004280.05531excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MRPS17 is not avaliable on ENCORE database.