MIR29B1

General Information

Gene Name       : MIR29B1
Gene ID             : ENSG00000283797.1
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MIR29B1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MIR29B1ENSG00000283797.10.000.000.00ENCSR000AEF
HepG2MIR29B1ENSG00000283797.10.000.000.00ENCSR985KAT
K562MIR29B1ENSG00000283797.10.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MIR29B1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MIR29B1 RNA is bound by 13 proteins.  







eCLIP assay for MIR29B1 is not avaliable on ENCORE database.





13 proteins are bound to MIR29B1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7130562226130562258-intron-Distal8.4743276.64870HepG2DGCR8
chr7130587103130587190-intron-Distal4.294803.50357HepG2QKI
chr7130584553130584623-intron-Distal3.243034.62871HepG2HNRNPM
chr7130581986130582070-intron-Distal3.444443.25288HepG2HNRNPC
chr7130572885130572923-intron-Distal3.546524.34707HepG2HNRNPK
chr7130596829130596859-intron-Distal,intron-Proximal4.429143.18415HepG2PRPF8
chr7130586187130586279-intron-Distal4.180556.20747HepG2SLTM
chr7130568922130568988-intron-Distal,intron-Proximal3.214275.01151HepG2HNRNPC
chr7130591811130591865-intron-Distal3.389523.63132HepG2HNRNPC
chr7130572723130572796-intron-Distal3.298656.66333HepG2HNRNPK
chr7130562237130562256-intron-Distal6.6379822.92738K562DGCR8
chr7130596863130596954-intron-Distal,intron-Proximal3.139704.39023HepG2BUD13
chr7130562226130562237-intron-Distal6.4989521.37440K562DGCR8
chr7130594621130594688-intron-Distal3.353907.67623HepG2XPO5
chr7130572656130572723-intron-Distal4.4898515.16118HepG2HNRNPK
chr7130572796130572871-intron-Distal4.848567.62457HepG2HNRNPK
chr7130567542130567614-intron-Distal3.220383.51682HepG2RBFOX2
chr7130561506130561510-intron-Distal,intron-Proximal7.0248916.11623HepG2DGCR8
chr7130561508130561531-intron-Distal,intron-Proximal4.806493.83114K562DGCR8
chr7130594223130594428-intron-Distal3.302854.13476HepG2SAFB
chr7130596859130596927-intron-Distal,intron-Proximal4.370106.55928HepG2PRPF8
chr7130561510130561532-intron-Distal,intron-Proximal7.2655621.09405HepG2DGCR8
chr7130586172130586270-intron-Distal4.194543.65892HepG2TAF15
chr7130581931130581978-intron-Distal4.462094.66899HepG2HNRNPM
chr7130582973130583030-intron-Distal4.151513.87340HepG2CSTF2T
chr7130594000130594075-intron-Distal4.055704.12763HepG2TAF15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MIR29B1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MIR29B1 is not available on ENCORE database.

  • 52 RBPs can affect the levels of MIR29B1.  








The Knockdown/knockout RNA-Seq assay for MIR29B1 is not available on ENCORE database.





52 RBPs can affect the gene expression of MIR29B1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MIR29B1ENSG00000226380.3485.0782032.659103.8926091.0897088.91870HepG2ACO1
MIR29B1ENSG00000226380.348.2784016.422901.555602.694302.16950HepG2AKAP1
MIR29B1ENSG00000226380.3250.3557040.717202.6202030.4844028.63870HepG2AUH
MIR29B1ENSG00000226380.373.1821025.406701.526203.325702.29830HepG2BCCIP
MIR29B1ENSG00000226380.377.9392036.023601.113303.018302.39630HepG2BOP1
MIR29B1ENSG00000226380.3132.6681034.958701.9240012.6065011.42820HepG2CELF1
MIR29B1ENSG00000226380.3195.4834024.982302.9680018.6206016.88070HepG2DDX55
MIR29B1ENSG00000226380.3146.6460013.507803.4404017.7281016.34540HepG2DDX6
MIR29B1ENSG00000226380.390.4771013.621202.731607.229403.38090HepG2DROSHA
MIR29B1ENSG00000226380.339.2304010.815801.858703.161502.20160HepG2EIF3D
MIR29B1ENSG00000226380.351.3579013.978101.877303.427602.66470HepG2EIF4B
MIR29B1ENSG00000226380.394.4438046.752801.014303.351302.69930HepG2ETF1
MIR29B1ENSG00000226380.3106.7303014.398402.8899014.2598010.80840HepG2EXOSC5
MIR29B1ENSG00000226380.321.351406.092101.809202.097801.40590HepG2FUBP3
MIR29B1ENSG00000226380.337.0643013.440001.463402.444801.81710HepG2G3BP1
MIR29B1ENSG00000226380.32.5604037.49370-3.872206.690605.72310HepG2GPKOW
MIR29B1ENSG00000226380.34.1225021.16950-2.360402.397501.79250HepG2HNRNPA1
MIR29B1ENSG00000226380.394.9916034.537301.459504.276803.15660HepG2HNRNPA2B1
MIR29B1ENSG00000226380.356.4068023.387501.270003.071002.43510HepG2HNRNPU
MIR29B1ENSG00000226380.326.0614056.77130-1.123202.469801.78440HepG2IGF2BP1
MIR29B1ENSG00000226380.3287.6594014.568604.3033026.9569025.16230HepG2MATR3
MIR29B1ENSG00000226380.373.5007011.320902.698706.566405.00120HepG2METAP2
MIR29B1ENSG00000226380.36.3001031.72410-2.332103.243802.43490HepG2NSUN2
MIR29B1ENSG00000226380.361.6381029.223601.076602.219301.43970HepG2PABPC1
MIR29B1ENSG00000226380.350.4207011.790902.096205.438004.63330HepG2PCBP1
MIR29B1ENSG00000226380.348.2471011.998502.007504.715204.04320HepG2PTBP1
MIR29B1ENSG00000226380.38.8211035.56900-2.011603.240602.60180HepG2PUF60
MIR29B1ENSG00000226380.3176.0228037.764202.2206020.6224019.30710HepG2PUM1
MIR29B1ENSG00000226380.346.2521012.993001.831703.747003.03690HepG2QKI
MIR29B1ENSG00000226380.3238.2766021.203903.4901025.8804023.94410HepG2RAVER1
MIR29B1ENSG00000226380.389.1502039.075901.189903.824203.24100HepG2RBM22
MIR29B1ENSG00000226380.3147.2956026.502902.4744013.7921011.58970HepG2RBM27
MIR29B1ENSG00000226380.3163.3357062.094601.395204.852003.98080HepG2RPLP0
MIR29B1ENSG00000226380.334.5292010.522701.714202.701502.09260HepG2RPS19
MIR29B1ENSG00000226380.348.2383019.050901.340202.147501.44730HepG2RRP9
MIR29B1ENSG00000226380.347.7800010.563602.177204.776303.55480HepG2SERBP1
MIR29B1ENSG00000226380.313.7787035.41760-1.362001.970501.36910HepG2SF3B1
MIR29B1ENSG00000226380.3537.1040012.490505.42620116.92870114.16530HepG2SF3B4
MIR29B1ENSG00000226380.359.5227024.295801.292603.266202.57670HepG2SMN1
MIR29B1ENSG00000226380.3117.9635044.133301.418306.360305.68520HepG2SRFBP1
MIR29B1ENSG00000226380.335.9445013.038001.462902.202601.76780HepG2SRSF1
MIR29B1ENSG00000226380.3104.1449035.126501.567907.521606.55740HepG2SRSF5
MIR29B1ENSG00000226380.333.7200010.607601.668402.979202.41080HepG2SRSF9
MIR29B1ENSG00000226380.315.4374038.31550-1.311502.301401.82410HepG2SSB
MIR29B1ENSG00000226380.39.9366034.86670-1.811002.773502.04830HepG2TARDBP
MIR29B1ENSG00000226380.330.1258010.768001.484102.321801.55360HepG2TIA1
MIR29B1ENSG00000226380.3105.4923036.798901.519304.680103.57210HepG2UBE2L3
MIR29B1ENSG00000226380.371.9810014.686802.293008.094406.79940HepG2UCHL5
MIR29B1ENSG00000226380.340.7114018.592001.130602.069301.45020HepG2UPF1
MIR29B1ENSG00000226380.369.1965017.950101.946606.245305.40400HepG2UTP3
MIR29B1ENSG00000226380.36.7730024.47800-1.853602.217101.56210HepG2XRN2
MIR29B1ENSG00000226380.389.7030020.447902.133109.828008.95620HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MIR29B1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of MIR29B1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for MIR29B1 is not avaliable on ENCORE database.