LRIF1

General Information

Gene Name       : LRIF1
Gene ID             : ENSG00000121931.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRIF1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRIF1ENSG00000121931.1514.9211.5713.25ENCSR000AEF
HepG2LRIF1ENSG00000121931.1516.9033.3325.11ENCSR985KAT
K562LRIF1ENSG00000121931.1548.5349.8149.17ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRIF1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRIF1 RNA is bound by 27 proteins.  







eCLIP assay for LRIF1 is not avaliable on ENCORE database.





27 proteins are bound to LRIF1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1111490267111490324-3'-UTR,intron-Distal3.995593.31110K562TIA1
chr1111490218111490267-3'-UTR,intron-Distal3.208863.37074K562TIA1
chr1111490046111490131-3'-UTR,intron-Distal5.245804.80693HepG2FUBP3
chr1111489867111489902-3'-UTR,intron-Distal3.525053.23424HepG2FUBP3
chr1111490413111490473-3'-UTR,intron-Distal4.3069211.11870HepG2BCLAF1
chr1111490543111490614-3'-UTR,CDS,intron-Distal3.337923.07411K562LIN28B
chr1111489836111489911-3'-UTR,intron-Distal,intron-Proximal5.35331400.00000K562PUM2
chr1111489837111489941-3'-UTR,intron-Distal,intron-Proximal4.172478.50306K562ZC3H11A
chr1111490573111490652-3'-UTR,CDS,intron-Distal3.577769.83277HepG2BCLAF1
chr1111492704111492765-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.351415.25527HepG2U2AF2
chr1111489918111489977-3'-UTR,intron-Distal4.317537.41486HepG2FUBP3
chr1111492716111492741-3'-UTR,5'-UTR,CDS,intron-Distal4.570615.03746HepG2BCLAF1
chr1111490420111490501-3'-UTR,intron-Distal3.224356.36062HepG2HLTF
chr1111490118111490179-3'-UTR,intron-Distal3.5683323.25127K562PUM2
chr1111490473111490532-3'-UTR,intron-Distal4.7540711.13876HepG2BCLAF1
chr1111495285111495357-5'-UTR,CDS,intron-Distal4.232798.97722K562IGF2BP1
chr1111506173111506259-5'-UTR,CDS,intron-Distal3.408417.02084HepG2PRPF8
chr1111495170111495260-5'-UTR,CDS,intron-Distal3.9385711.16007K562IGF2BP1
chr1111506247111506300-5'-UTR,CDS,intron-Distal3.205603.58705K562IGF2BP2
chr1111506422111506559-5'-UTR,intron-Distal4.272225.65659HepG2DDX3X
chr1111506460111506522-5'-UTR,intron-Distal4.612695.17013K562RBM15
chr1111506451111506544-5'-UTR,intron-Distal3.133367.52236K562DDX3X
chr1111495121111495170-5'-UTR,CDS,intron-Distal4.528756.00568K562IGF2BP1
chr1111492643111492680-CDS,intron-Distal3.872825.35703HepG2BCLAF1
chr1111494835111494880-CDS,intron-Distal3.404004.29172K562YBX3
chr1111490654111490715-CDS,intron-Distal3.234334.50363K562CPSF6
chr1111490874111490885-CDS,intron-Distal3.6270712.01639K562YBX3
chr1111490589111490656-CDS,intron-Distal3.206016.93682K562UCHL5
chr1111490958111491031-CDS,intron-Distal3.130744.93258HepG2AQR
chr1111490961111491017-CDS,intron-Distal3.938448.08603HepG2BCLAF1
chr1111492481111492528-CDS,intron-Distal3.331785.17903K562UCHL5
chr1111492563111492612-CDS,intron-Distal3.387303.61076HepG2HLTF
chr1111494899111495017-CDS,intron-Distal3.067975.77595K562SAFB
chr1111494972111495013-CDS,intron-Distal3.289094.67590K562PUM2
chr1111490870111490874-CDS,intron-Distal3.9226412.02158K562YBX3
chr1111490898111490912-CDS,intron-Distal3.040647.00702K562YBX3
chr1111490885111490898-CDS,intron-Distal3.7672912.63512K562YBX3
chr1111490596111490651-CDS,intron-Distal4.341143.48757K562TRA2A
chr1111490870111490939-CDS,intron-Distal4.155059.37631HepG2BCLAF1
chr1111490651111490709-CDS,intron-Distal3.441953.31144K562TRA2A
chr1111494224111494300-CDS,intron-Distal3.5812216.80421K562PUM2
chr1111490855111490914-CDS,intron-Distal3.819343.75727K562SAFB
chr1111495003111495056-CDS,intron-Distal4.280005.10483K562IGF2BP1
chr1111492552111492607-CDS,intron-Distal3.871757.01246HepG2BCLAF1
chr1111490949111491019-CDS,intron-Distal3.264639.42893K562UCHL5
chr1111494673111494766-CDS,intron-Distal3.718725.00403K562IGF2BP1
chr1111490959111491017-CDS,intron-Distal3.420635.44868K562ZNF622
chr1111492549111492615-CDS,intron-Distal3.375537.39639K562ZNF622
chr1111490665111490731-CDS,intron-Distal5.652309.32793HepG2BCLAF1
chr1111498113111498190-intron-Distal3.715409.46590HepG2SUGP2
chr1111506156111506237-intron-Distal3.071093.75616K562SRSF1
chr1111499256111499346-intron-Distal3.546637.02273K562MATR3
chr1111504980111505054-intron-Distal3.719947.82071K562KHSRP
chr1111492824111492912-intron-Distal,intron-Proximal3.153136.87129K562KHSRP
chr1111502909111502986-intron-Distal3.637758.16945K562TARDBP
chr1111506104111506167-intron-Distal5.7130111.79327K562RBM15
chr1111492344111492438-intron-Distal,intron-Proximal3.653097.08481K562KHSRP
chr1111498454111498534-intron-Distal4.764594.40847HepG2PTBP1
chr1111500395111500461-intron-Distal4.0678713.27907K562KHSRP
chr1111498431111498513-intron-Distal3.8696710.24855HepG2SUGP2
chr1111491063111491120-intron-Distal3.975333.90026K562KHSRP
chr1111492976111493051-intron-Distal4.4190110.04635K562KHSRP
chr1111499007111499093-intron-Distal3.224375.33660HepG2PTBP1
chr1111498690111498737-intron-Distal4.593726.10726HepG2SUGP2
chr1111498579111498663-intron-Distal5.3730610.28828HepG2SUGP2
chr1111504168111504274-intron-Distal3.145724.89227HepG2KHSRP
chr1111498514111498579-intron-Distal4.975038.29733HepG2SUGP2
chr1111500461111500517-intron-Distal3.657535.61949K562KHSRP
chr1111504178111504246-intron-Distal3.628109.89511K562KHSRP
chr1111505090111505152-intron-Distal3.272973.22271K562U2AF2
chr1111506167111506224-intron-Distal3.663635.13030K562RBM15
chr1111502301111502364-intron-Distal3.684925.39999HepG2HNRNPC
chr1111499016111499098-intron-Distal4.194427.80454K562PTBP1
chr1111498190111498221-intron-Distal4.225244.28663HepG2SUGP2
chr1111491389111491489-intron-Distal5.064558.81516K562KHSRP
chr1111504246111504312-intron-Distal3.282366.82127K562KHSRP
chr1111498239111498339-intron-Distal3.306917.08259HepG2SUGP2
chr1111504630111504706-intron-Distal4.7049110.79749K562TARDBP
chr1111498931111498990-intron-Distal3.185056.57022HepG2SUGP2
chr1111499026111499102-intron-Distal3.524446.75305K562MATR3
chr1111498872111498925-intron-Distal4.407455.35792HepG2SUGP2
chr1111498458111498515-intron-Distal4.774955.61723K562MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRIF1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRIF1 is not available on ENCORE database.

  • 64 RBPs can affect the levels of LRIF1.  








The Knockdown/knockout RNA-Seq assay for LRIF1 is not available on ENCORE database.





64 RBPs can affect the gene expression of LRIF1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRIF1ENSG00000121931.111247.017301754.87400-0.492903.720503.11620HepG2AKAP1
LRIF1ENSG00000121931.111022.57010806.389300.342602.405501.56960HepG2BCLAF1
LRIF1ENSG00000121931.111598.267801107.670700.528907.103905.94260HepG2CALR
LRIF1ENSG00000121931.111593.281101129.247400.496502.641501.89480HepG2CNOT7
LRIF1ENSG00000121931.111032.09180722.940000.513504.807303.94020HepG2DDX21
LRIF1ENSG00000121931.11881.14700707.427700.316702.227801.41900HepG2DDX24
LRIF1ENSG00000121931.11967.36580665.701000.539103.593702.32080HepG2AGO1
LRIF1ENSG00000121931.111668.334701226.307700.444004.036703.06630HepG2EIF4G2
LRIF1ENSG00000121931.112030.830101534.630200.404107.108406.21980HepG2ETF1
LRIF1ENSG00000121931.111099.519501547.92340-0.493504.294903.44650HepG2FXR1
LRIF1ENSG00000121931.11879.395601435.83970-0.707307.330806.27230HepG2G3BP1
LRIF1ENSG00000121931.111169.725301524.44050-0.382102.854801.94780HepG2G3BP2
LRIF1ENSG00000121931.11626.700301045.24230-0.738005.416003.85470HepG2GRSF1
LRIF1ENSG00000121931.11972.822201454.11900-0.579906.179405.16670HepG2HNRNPK
LRIF1ENSG00000121931.11822.259401182.05940-0.523609.548808.36850HepG2HNRNPL
LRIF1ENSG00000121931.11691.63370961.61180-0.475406.302105.41780HepG2HNRNPU
LRIF1ENSG00000121931.111224.130701593.76130-0.380702.606701.99060HepG2NCBP2
LRIF1ENSG00000121931.111763.280501419.248800.313001.984101.36440HepG2PABPC4
LRIF1ENSG00000121931.111461.94640898.383400.7024014.9801013.40370HepG2PRPF4
LRIF1ENSG00000121931.111147.095101303.85400-0.184801.953201.43720HepG2PUM1
LRIF1ENSG00000121931.111813.580801482.586000.290602.872202.23860HepG2QKI
LRIF1ENSG00000121931.112015.342201282.675800.6518013.5794012.60520HepG2RBM22
LRIF1ENSG00000121931.111249.403901523.48970-0.286103.118102.55010HepG2NELFE
LRIF1ENSG00000121931.111154.049001418.92470-0.298103.339602.67010HepG2RECQL
LRIF1ENSG00000121931.111242.09570868.046800.516802.911001.94480HepG2RPS10
LRIF1ENSG00000121931.111674.856801342.372900.319202.395101.73690HepG2SF3B1
LRIF1ENSG00000121931.111745.780901448.750800.269003.426202.88650HepG2SRFBP1
LRIF1ENSG00000121931.111492.936501212.724800.299803.451102.76600HepG2SRSF5
LRIF1ENSG00000121931.111390.699701210.271800.200401.868501.39890HepG2SRSF9
LRIF1ENSG00000121931.111833.466801257.886200.543507.509206.74490HepG2SSB
LRIF1ENSG00000121931.111325.04710825.923300.681904.707903.12910HepG2SUB1
LRIF1ENSG00000121931.11599.30000934.44610-0.640808.015507.24430HepG2TIAL1
LRIF1ENSG00000121931.112365.608501239.604600.9322011.5577010.24630HepG2U2AF1
LRIF1ENSG00000121931.111063.622001384.24620-0.380105.037104.26930HepG2UTP3
LRIF1ENSG00000121931.111242.82070868.977800.516103.007501.68820HepG2XRCC5
LRIF1ENSG00000121931.112560.111001746.836700.551407.640205.63530K562AARS
LRIF1ENSG00000121931.115084.290204001.121900.345503.261001.91700K562ABCF1
LRIF1ENSG00000121931.112251.776003078.84140-0.451309.783508.79920K562AGGF1
LRIF1ENSG00000121931.111385.581601833.27730-0.403905.822303.56680K562AKAP1
LRIF1ENSG00000121931.112321.743103203.65010-0.464505.398604.46910K562AKAP8L
LRIF1ENSG00000121931.117255.507303536.028501.0368026.5785024.95660K562AQR
LRIF1ENSG00000121931.113893.937202932.107700.409204.009202.95680K562BOP1
LRIF1ENSG00000121931.111347.020501857.60360-0.463705.644404.09060K562DDX3X
LRIF1ENSG00000121931.111576.016101883.37230-0.257002.546701.30520K562DDX6
LRIF1ENSG00000121931.112961.012502521.587300.231702.659301.95130K562EIF2S2
LRIF1ENSG00000121931.112244.105002876.08280-0.358003.428702.47650K562FIP1L1
LRIF1ENSG00000121931.112377.127101659.106900.518705.175803.55280K562FKBP4
LRIF1ENSG00000121931.112331.669802018.300700.208102.133301.58960K562FXR1
LRIF1ENSG00000121931.112082.636702605.21910-0.323003.143201.58950K562G3BP1
LRIF1ENSG00000121931.113126.390802107.377200.568904.709903.73170K562G3BP2
LRIF1ENSG00000121931.111928.604203360.27680-0.8010016.8881014.97930K562GRSF1
LRIF1ENSG00000121931.112315.802101911.872100.276402.516801.94460K562HNRNPC
LRIF1ENSG00000121931.112426.520203558.29660-0.552308.640206.69730K562HNRNPL
LRIF1ENSG00000121931.112046.891302771.39900-0.437204.926703.24750K562IGF2BP3
LRIF1ENSG00000121931.112803.180803399.95720-0.278502.349901.59820K562KIF1C
LRIF1ENSG00000121931.112372.629502858.10910-0.268602.447301.58490K562MATR3
LRIF1ENSG00000121931.111894.831902634.62960-0.4755010.667909.18930K562MTPAP
LRIF1ENSG00000121931.112375.197701669.783200.508305.166704.14190K562PRPF8
LRIF1ENSG00000121931.112196.122302782.36880-0.341403.786503.02120K562PTBP1
LRIF1ENSG00000121931.117081.699004753.143200.575109.015907.53190K562PUF60
LRIF1ENSG00000121931.111769.565603177.31290-0.8444015.2003013.96870K562PUS1
LRIF1ENSG00000121931.112178.320303095.67100-0.507009.379308.31090K562RBM15
LRIF1ENSG00000121931.111338.307102000.32910-0.579805.546803.58030K562RBM25
LRIF1ENSG00000121931.113329.966802959.284500.170202.268001.41180K562SRPK2
LRIF1ENSG00000121931.111972.154402727.59470-0.467906.317605.26030K562SRSF1
LRIF1ENSG00000121931.111947.792302575.87300-0.403204.011002.70600K562SRSF5
LRIF1ENSG00000121931.114369.031803451.523900.340002.700501.46920K562STAU1
LRIF1ENSG00000121931.112244.947702760.62100-0.298302.282701.63640K562TARDBP
LRIF1ENSG00000121931.112015.673202662.89990-0.401704.942703.79960K562TIA1
LRIF1ENSG00000121931.112554.512502980.37570-0.222402.710501.45520K562TROVE2
LRIF1ENSG00000121931.112733.630802110.804600.372904.804203.74850K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRIF1 is not available on ENCORE database.





16 RBPs can affect the splicing of LRIF1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.126000.002990.05035includedK562SRSF1
SELRIF1ENSG00000121931.11chr1-111493909111495437111492472111492745111506242111506701-0.226000.000000.00043excludedHepG2AKAP1
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.119000.000440.00609includedK562AQR
SELRIF1ENSG00000121931.11chr1-111493909111495437111492472111492745111506242111506701-0.238000.000010.00567excludedHepG2BCLAF1
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.212000.000050.00712includedK562SUPV3L1
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.249000.000000.00019includedK562EFTUD2
SELRIF1ENSG00000121931.11chr1-111493909111495437111492472111492745111506242111506701-0.210000.000020.00214excludedHepG2MATR3
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.229000.000010.00048includedK562U2AF1
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.354000.000000.00000includedK562HNRNPL
SELRIF1ENSG00000121931.11chr1-111493909111495437111492472111492745111506242111506701-0.313000.001240.03621excludedHepG2SF3A3
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.235000.000000.00012includedK562U2AF2
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.151000.000010.00452includedK562ZC3H8
SELRIF1ENSG00000121931.11chr1-111493909111495437111492472111492745111506242111506701-0.373000.000000.00111excludedHepG2YBX3
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.143000.000550.02856includedK562HNRNPK
SELRIF1ENSG00000121931.11chr1-111493909111495437111492472111492745111506242111506701-0.155000.000190.01104excludedK562PTBP1
SELRIF1ENSG00000121931.11chr1-1114939091114954371114924721114927451115062421115067010.252000.000270.00641includedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LRIF1 is not avaliable on ENCORE database.