KCTD13

General Information

Gene Name       : KCTD13
Gene ID             : ENSG00000174943.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCTD13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCTD13ENSG00000174943.105.068.296.67ENCSR000AEF
HepG2KCTD13ENSG00000174943.107.676.086.88ENCSR985KAT
K562KCTD13ENSG00000174943.106.857.407.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCTD13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCTD13 RNA is bound by 12 proteins.  







eCLIP assay for KCTD13 is not avaliable on ENCORE database.





12 proteins are bound to KCTD13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr162991806129918120-3'-UTR,intron-Distal4.620486.14899HepG2PCBP2
chr162992229329922382-3'-UTR,CDS,intron-Distal,intron-Proximal3.531783.32039HepG2PPIG
chr162991806029918173-3'-UTR,intron-Distal4.647515.38060HepG2HNRNPK
chr162991812029918202-3'-UTR,CDS,intron-Distal,intron-Proximal4.887528.09313HepG2PCBP2
chr162992229929922473-3'-UTR,CDS,intron-Distal3.491314.24070HepG2GRWD1
chr162992238229922463-3'-UTR,CDS,intron-Distal3.437703.59112HepG2PPIG
chr162993738529937508-5'-UTR,intron-Distal3.620886.65702HepG2NCBP2
chr162993741029937501-5'-UTR,intron-Distal3.849623.15006K562RBM15
chr162993091629930966-CDS,intron-Distal4.223743.93804HepG2U2AF1
chr162993091329930965-CDS,intron-Distal4.0698212.50926HepG2U2AF2
chr162993446929934542-CDS,intron-Distal,intron-Proximal3.1566612.49469HepG2PRPF8
chr162993094529931092-CDS,intron-Distal4.509194.79379K562KHSRP
chr162993688129937010-intron-Distal,intron-Proximal4.123604.19401K562HNRNPK
chr162992364729923723-intron-Distal,intron-Proximal4.072628.46917HepG2SLTM
chr162993693829936990-intron-Distal,intron-Proximal4.303034.07750HepG2HNRNPK
chr162992346229923537-intron-Distal,intron-Proximal3.980353.58955HepG2SRSF9
chr162993661129936717-intron-Distal3.261134.57751HepG2U2AF2
chr162993685629936933-intron-Distal,intron-Proximal3.040373.48131HepG2U2AF2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCTD13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCTD13 is not available on ENCORE database.

  • 60 RBPs can affect the levels of KCTD13.  








The Knockdown/knockout RNA-Seq assay for KCTD13 is not available on ENCORE database.





60 RBPs can affect the gene expression of KCTD13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCTD13ENSG00000174943.5711.65390305.991701.2176017.2853015.97480HepG2BOP1
KCTD13ENSG00000174943.5424.82150293.921900.531302.503401.58220HepG2CCAR1
KCTD13ENSG00000174943.5305.31720151.820501.007805.199304.14570HepG2CNOT7
KCTD13ENSG00000174943.5240.10350177.832400.433001.898701.34730HepG2CELF1
KCTD13ENSG00000174943.5264.73230191.228800.469102.457101.75270HepG2DAZAP1
KCTD13ENSG00000174943.5214.28820123.384400.796304.055503.24880HepG2DDX21
KCTD13ENSG00000174943.5313.54810174.514400.845204.945504.12880HepG2DDX3X
KCTD13ENSG00000174943.5189.90890134.745400.495002.033201.42080HepG2DNAJC21
KCTD13ENSG00000174943.5220.20530133.543600.721404.603703.79820HepG2DNAJC2
KCTD13ENSG00000174943.5260.92090144.111500.856304.572503.82060HepG2EIF2S1
KCTD13ENSG00000174943.5273.30480159.228800.779304.021103.25450HepG2EIF4A3
KCTD13ENSG00000174943.5245.93600155.091500.665102.459901.80980HepG2EIF4B
KCTD13ENSG00000174943.5406.03380305.734100.409202.587202.00240HepG2ETF1
KCTD13ENSG00000174943.5235.87180136.036200.793903.848803.10570HepG2HNRNPA1
KCTD13ENSG00000174943.5261.94480151.311100.791604.221303.37780HepG2HNRNPC
KCTD13ENSG00000174943.5260.83910151.508000.783704.091803.28560HepG2IGF2BP2
KCTD13ENSG00000174943.5214.57130153.538400.482802.352901.66940HepG2ILF2
KCTD13ENSG00000174943.5547.21540310.414800.817805.754004.54750HepG2LARP4
KCTD13ENSG00000174943.5254.56790160.806700.662603.012502.32900HepG2MAGOH
KCTD13ENSG00000174943.5232.48450161.691300.523801.825901.30810HepG2MATR3
KCTD13ENSG00000174943.5379.71290165.487401.198109.657408.51450HepG2NCBP2
KCTD13ENSG00000174943.5259.14430147.319600.814704.380803.48580HepG2PABPC4
KCTD13ENSG00000174943.5208.40070148.787200.486002.135901.38400HepG2PARN
KCTD13ENSG00000174943.5234.05670168.966500.470002.233501.67750HepG2PCBP1
KCTD13ENSG00000174943.5188.20710134.066100.489302.034401.39410HepG2PPIL4
KCTD13ENSG00000174943.5421.71900192.140701.1340015.6325014.45900HepG2PUM1
KCTD13ENSG00000174943.5294.80320192.003500.618503.503102.75250HepG2PUM2
KCTD13ENSG00000174943.5273.06910186.201200.552302.803802.17520HepG2QKI
KCTD13ENSG00000174943.5227.85740135.584500.748803.747203.04230HepG2RPS19
KCTD13ENSG00000174943.5199.05520124.803400.673402.320501.58430HepG2RPS2
KCTD13ENSG00000174943.5184.74470133.861000.464701.879301.33120HepG2SAFB2
KCTD13ENSG00000174943.5255.70430119.047301.102802.777001.42230HepG2SF1
KCTD13ENSG00000174943.5241.89830178.999000.434301.832201.33420HepG2SF3B4
KCTD13ENSG00000174943.5240.03260106.476701.172603.374101.89070HepG2SNRNP200
KCTD13ENSG00000174943.5524.29590288.621800.8611010.531109.72380HepG2SRFBP1
KCTD13ENSG00000174943.5425.70850296.209400.523103.023002.26890HepG2TARDBP
KCTD13ENSG00000174943.5293.93960146.070201.008808.323407.54070HepG2TIAL1
KCTD13ENSG00000174943.5222.92390147.359900.597103.365202.75680HepG2TRIM56
KCTD13ENSG00000174943.5279.50500123.745901.175403.061002.02140HepG2U2AF2
KCTD13ENSG00000174943.5375.00550288.913000.376202.135201.59520HepG2UTP3
KCTD13ENSG00000174943.5507.58030329.116500.624907.021006.25410HepG2ZNF622
KCTD13ENSG00000174943.5474.89210292.241100.700304.760704.02870K562AQR
KCTD13ENSG00000174943.5544.85230316.346600.784306.502305.15170K562BOP1
KCTD13ENSG00000174943.5336.26400209.200800.684604.462403.06240K562CCAR1
KCTD13ENSG00000174943.5600.24800412.044100.542702.273101.32860K562CNOT7
KCTD13ENSG00000174943.5249.60830152.147500.714104.181202.86100K562DDX3X
KCTD13ENSG00000174943.5314.30280220.165200.513503.029202.28220K562EIF2S2
KCTD13ENSG00000174943.5241.74470158.954200.604802.999402.14700K562EIF4A3
KCTD13ENSG00000174943.5473.51920342.253300.468302.635201.80100K562FMR1
KCTD13ENSG00000174943.5237.87050165.305300.524902.518501.93530K562FXR1
KCTD13ENSG00000174943.5440.41860321.133300.455602.550101.78580K562GPKOW
KCTD13ENSG00000174943.5412.22710293.369200.490602.673401.92910K562GRSF1
KCTD13ENSG00000174943.5324.51480217.697000.575903.058602.43410K562HNRNPC
KCTD13ENSG00000174943.5408.47180274.225200.574802.761401.82910K562KRR1
KCTD13ENSG00000174943.5447.56680313.464800.513703.308402.34920K562METAP2
KCTD13ENSG00000174943.5420.40210329.698400.350502.123601.40950K562MTPAP
KCTD13ENSG00000174943.5514.25410366.326500.489304.479403.55570K562NSUN2
KCTD13ENSG00000174943.5478.94230341.896000.486202.631701.82240K562PCBP3
KCTD13ENSG00000174943.5346.48160262.230400.401801.984601.30430K562POLR2G
KCTD13ENSG00000174943.5583.39810460.023500.342702.206501.34700K562PUM2
KCTD13ENSG00000174943.5317.87710429.83270-0.435302.731702.14170K562RBM15
KCTD13ENSG00000174943.5229.27360138.311800.729003.976802.95200K562RBM22
KCTD13ENSG00000174943.5479.91170361.467800.408802.809201.98920K562SF3A3
KCTD13ENSG00000174943.5491.82450305.433400.687204.434603.18820K562SF3B1
KCTD13ENSG00000174943.5230.46570141.525800.703402.376501.71330K562SRSF1
KCTD13ENSG00000174943.5282.99070193.036300.551802.549601.54600K562SRSF4
KCTD13ENSG00000174943.5347.65840199.571500.800705.426603.99600K562TRIM56
KCTD13ENSG00000174943.5479.09700332.362100.527503.832102.79710K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCTD13 is not available on ENCORE database.





1 RBPs can affect the splicing of KCTD13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSKCTD13ENSG00000174943.5chr16-2992229829922543299222982992249429923135299231880.148000.003590.02161longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCTD13 is not avaliable on ENCORE database.