KATNBL1

General Information

Gene Name       : KATNBL1
Gene ID             : ENSG00000134152.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KATNBL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KATNBL1ENSG00000134152.1023.5018.4920.99ENCSR000AEF
HepG2KATNBL1ENSG00000134152.108.2916.8012.54ENCSR985KAT
K562KATNBL1ENSG00000134152.1013.1414.9714.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KATNBL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KATNBL1 RNA is bound by 11 proteins.  







eCLIP assay for KATNBL1 is not avaliable on ENCORE database.





11 proteins are bound to KATNBL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr153444079034440864-3'-UTR,CDS,intron-Distal,intron-Proximal4.982636.48028K562PRPF8
chr153444512534445202-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.599413.27569HepG2BCLAF1
chr153444077334440869-3'-UTR,CDS,intron-Distal,intron-Proximal3.473926.99200HepG2EFTUD2
chr153444076934440859-3'-UTR,CDS,intron-Distal,intron-Proximal4.741054.16174HepG2PRPF8
chr153444078434440905-3'-UTR,CDS,intron-Distal,intron-Proximal3.299859.12012HepG2BCLAF1
chr153443435234434414-3'-UTR,intron-Distal4.668164.34038HepG2BCLAF1
chr153450215134502280-5'-UTR,intron-Distal,intron-Proximal3.426126.72691HepG2NCBP2
chr153450216234502264-5'-UTR,intron-Distal,intron-Proximal3.427955.59242K562DDX3X
chr153443959134439640-CDS,intron-Distal,intron-Proximal4.871865.81672HepG2U2AF2
chr153443956534439635-CDS,intron-Distal,intron-Proximal3.665304.09885HepG2BCLAF1
chr153444090534440954-CDS,intron-Distal,intron-Proximal4.855443.02457HepG2BCLAF1
chr153443889234438966-CDS,intron-Distal,intron-Proximal3.704434.06013K562PRPF8
chr153444073334440832-intron-Distal,intron-Proximal3.347574.83282K562EFTUD2
chr153443933134439374-intron-Distal,intron-Proximal5.388538.16423HepG2U2AF2
chr153443877634438834-intron-Distal,intron-Proximal4.659786.70273K562QKI
chr153443859634438654-intron-Distal3.294803.64762HepG2QKI
chr153450064434500733-intron-Distal,polyA_site3.479203.04099HepG2CSTF2
chr153446565734465729-intron-Distal3.059523.23296HepG2SUGP2
chr153443866534438716-intron-Distal3.571073.94088HepG2QKI
chr153443871634438822-intron-Distal,intron-Proximal5.4507420.95562HepG2QKI
chr153443968734439815-intron-Distal,intron-Proximal3.531855.56048K562KHSRP
chr153444070634440773-intron-Distal,intron-Proximal3.323073.12187HepG2EFTUD2
chr153443872234438776-intron-Distal,intron-Proximal3.427595.19171K562QKI
chr153444072234440819-intron-Distal,intron-Proximal4.175237.49362HepG2TIAL1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KATNBL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KATNBL1 is not available on ENCORE database.

  • 54 RBPs can affect the levels of KATNBL1.  








The Knockdown/knockout RNA-Seq assay for KATNBL1 is not available on ENCORE database.





54 RBPs can affect the gene expression of KATNBL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KATNBL1ENSG00000134152.6353.93730225.538800.650003.889602.63480HepG2AATF
KATNBL1ENSG00000134152.6512.87260406.608900.334902.430101.85350HepG2ACO1
KATNBL1ENSG00000134152.6176.02320259.01340-0.557302.606501.63780HepG2ADAR
KATNBL1ENSG00000134152.6615.20080460.621900.417402.046201.58090HepG2AKAP1
KATNBL1ENSG00000134152.6846.64240542.712100.641509.171408.04090HepG2AUH
KATNBL1ENSG00000134152.6304.56180406.55120-0.416702.992102.30620HepG2CKAP4
KATNBL1ENSG00000134152.6374.04160230.824300.696303.599901.96440HepG2CSTF2T
KATNBL1ENSG00000134152.6265.81200376.06910-0.500604.081503.09130HepG2DDX19B
KATNBL1ENSG00000134152.6181.59160260.81200-0.522302.813002.10600HepG2DNAJC21
KATNBL1ENSG00000134152.6155.49430297.56290-0.936305.588004.31440HepG2EEF2
KATNBL1ENSG00000134152.6268.38170402.71030-0.585503.047802.37760HepG2EIF4A3
KATNBL1ENSG00000134152.6639.87960492.114600.378702.850802.00350HepG2EIF4G1
KATNBL1ENSG00000134152.6918.85160623.084300.560307.922306.99470HepG2ETF1
KATNBL1ENSG00000134152.6702.31830314.668101.1582011.7667010.33540HepG2FIP1L1
KATNBL1ENSG00000134152.6264.14350190.995000.467702.248801.53380HepG2FUBP3
KATNBL1ENSG00000134152.6139.51640274.52060-0.976505.616804.72590HepG2GPKOW
KATNBL1ENSG00000134152.6372.45210564.10460-0.598903.516301.79100HepG2HNRNPD
KATNBL1ENSG00000134152.6214.36610290.94950-0.440702.407401.83900HepG2HNRNPU
KATNBL1ENSG00000134152.6288.15910465.96770-0.693403.056201.75580HepG2HSPD1
KATNBL1ENSG00000134152.6215.59080316.61230-0.554403.224102.44700HepG2IGF2BP1
KATNBL1ENSG00000134152.6300.42460408.69030-0.444001.943801.41030HepG2MATR3
KATNBL1ENSG00000134152.6299.50430418.32420-0.482002.414101.81970HepG2NCBP2
KATNBL1ENSG00000134152.6552.36570385.400100.519204.264703.61720HepG2PTBP1
KATNBL1ENSG00000134152.6328.68780472.19550-0.522702.655102.06930HepG2PUF60
KATNBL1ENSG00000134152.6639.11610417.397100.614605.939105.07210HepG2QKI
KATNBL1ENSG00000134152.6514.50640299.304000.781503.874103.04350HepG2RAVER1
KATNBL1ENSG00000134152.6584.71450401.706900.541504.393703.34300HepG2RBM15
KATNBL1ENSG00000134152.6885.64080520.787800.7659011.4528010.55170HepG2RBM22
KATNBL1ENSG00000134152.6532.33550378.815000.490703.465302.71750HepG2RBM25
KATNBL1ENSG00000134152.6495.28600399.474700.310101.855801.33640HepG2RECQL
KATNBL1ENSG00000134152.6128.91750235.04430-0.866504.948404.15350HepG2RPS19
KATNBL1ENSG00000134152.6396.10740653.65150-0.722604.953703.88260HepG2RPS3A
KATNBL1ENSG00000134152.6444.22520237.379900.904006.974205.79070HepG2RRP9
KATNBL1ENSG00000134152.61881.98460588.218601.6777043.8245042.45800HepG2SRFBP1
KATNBL1ENSG00000134152.6568.86690376.451600.595505.685404.93100HepG2TAF15
KATNBL1ENSG00000134152.6216.94870455.79650-1.071005.175703.75500HepG2TBRG4
KATNBL1ENSG00000134152.6499.61760345.907000.530304.168803.15110HepG2TIA1
KATNBL1ENSG00000134152.6153.41740282.70610-0.881806.576405.86590HepG2TIAL1
KATNBL1ENSG00000134152.6198.53370285.23940-0.522803.170602.57630HepG2TRIM56
KATNBL1ENSG00000134152.6342.30250461.28220-0.430402.662501.80740HepG2TUFM
KATNBL1ENSG00000134152.6408.73180585.45930-0.518402.744301.65390HepG2XPO5
KATNBL1ENSG00000134152.6518.83130294.212900.818304.991303.27410HepG2XRCC5
KATNBL1ENSG00000134152.6380.93180247.788600.620305.220604.34640HepG2ZC3H8
KATNBL1ENSG00000134152.6552.69420331.603300.736909.876609.00340HepG2ZNF622
KATNBL1ENSG00000134152.6547.43380866.53890-0.662606.264605.44130K562AQR
KATNBL1ENSG00000134152.6248.02050340.52730-0.457302.431701.69240K562CPSF6
KATNBL1ENSG00000134152.6229.36050349.81410-0.609003.325102.31970K562EFTUD2
KATNBL1ENSG00000134152.6323.03780471.82910-0.546603.892502.92400K562EIF4A3
KATNBL1ENSG00000134152.61097.89410924.805200.247402.303801.44160K562EIF4G2
KATNBL1ENSG00000134152.6184.68500325.10830-0.815905.528904.41060K562GPKOW
KATNBL1ENSG00000134152.6344.70540471.16450-0.450902.999401.72080K562NCBP2
KATNBL1ENSG00000134152.6339.90630469.87780-0.467103.007201.61150K562RBM25
KATNBL1ENSG00000134152.6277.34490515.11890-0.8932010.403708.69550K562SF3B4
KATNBL1ENSG00000134152.6374.61660627.38190-0.743902.592101.90500K562SRSF1
KATNBL1ENSG00000134152.6324.56930635.10230-0.968503.610402.79870K562TARDBP
KATNBL1ENSG00000134152.6353.26840480.19120-0.442802.301101.31570K562U2AF1
KATNBL1ENSG00000134152.6366.71840495.93900-0.435503.030802.18990K562U2AF2
KATNBL1ENSG00000134152.6577.87960434.699300.410702.890701.99570K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KATNBL1 is not available on ENCORE database.





6 RBPs can affect the splicing of KATNBL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKATNBL1ENSG00000134152.6chr15-3447002134470200344557603445589134502151345022800.178000.000040.00081includedK562AQR
SEKATNBL1ENSG00000134152.6chr15-344389613443905134437598344376923444083234440951-0.429000.000000.00001excludedK562PUS1
SEKATNBL1ENSG00000134152.6chr15-344395803443963134439177344393593444083234440951-0.456000.003950.06813excludedK562U2AF1
SEKATNBL1ENSG00000134152.6chr15-344389613443905134437598344376923444083234440951-0.329000.004060.07834excludedK562RBM15
SEKATNBL1ENSG00000134152.6chr15-3447002134470200344557603445589134502151345022800.213000.002570.08240includedK562SF3B1
A3SSKATNBL1ENSG00000134152.6chr15-3444520534445290344452053444527034446844344468850.068000.001570.01039longerK562AQR
MXEKATNBL1ENSG00000134152.6chr15-3444083234440951344449903444527034437598344376923444684434446885-0.350000.000040.001572includedK562PUS1
MXEKATNBL1ENSG00000134152.6chr15-3444083234440951344449903444527034437598344376923444684434446885-0.238000.000620.026172includedK562AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KATNBL1 is not avaliable on ENCORE database.