JAGN1

General Information

Gene Name       : JAGN1
Gene ID             : ENSG00000171135.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: JAGN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878JAGN1ENSG00000171135.1424.4823.2123.84ENCSR000AEF
HepG2JAGN1ENSG00000171135.1436.2132.9634.59ENCSR985KAT
K562JAGN1ENSG00000171135.1445.2335.2140.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for JAGN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • JAGN1 RNA is bound by 14 proteins.  







eCLIP assay for JAGN1 is not avaliable on ENCORE database.





14 proteins are bound to JAGN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr399353079935396+3'-UTR3.487343.27901HepG2UPF1
chr399354209935502+3'-UTR4.094339.20480K562IGF2BP2
chr399352759935389+3'-UTR3.386333.92922HepG2AKAP1
chr399353639935402+3'-UTR3.601815.55970K562YBX3
chr399354189935501+3'-UTR3.121713.99175HepG2IGF2BP1
chr399354409935492+3'-UTR4.301316.57313K562PABPC4
chr399354219935506+3'-UTR3.116173.65531HepG2IGF2BP3
chr399352859935380+3'-UTR3.342175.27408HepG2LARP4
chr399354149935511+3'-UTR4.189027.84191HepG2UPF1
chr399323039932382+5'-UTR4.194929.77030K562DDX3X
chr399323929932458+5'-UTR,CDS3.5423214.55365K562DDX3X
chr399323669932460+5'-UTR,CDS3.969385.39661K562GEMIN5
chr399323129932451+5'-UTR,CDS4.4650224.92522HepG2DDX3X
chr399348739935029+CDS4.056486.76541HepG2SND1
chr399324589932496+CDS,intron-Proximal3.528936.59200K562DDX3X
chr399347749934895+CDS3.073055.29764K562SND1
chr399324519932494+CDS4.703476.05264HepG2DDX3X
chr399347609934848+CDS3.199445.38711K562YBX3
chr399349359935058+CDS4.793865.65349K562RBM15
chr399346349934727+CDS3.318128.67981K562YBX3
chr399345159934633+CDS,intron-Proximal4.507525.25202HepG2AQR
chr399325099932601+intron-Distal,intron-Proximal3.436563.54074K562RBM15
chr399325439932570+intron-Proximal4.107747.39116HepG2RBM22
chr399325259932543+intron-Proximal4.543097.00609HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for JAGN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for JAGN1 is not available on ENCORE database.

  • 65 RBPs can affect the levels of JAGN1.  








The Knockdown/knockout RNA-Seq assay for JAGN1 is not available on ENCORE database.





65 RBPs can affect the gene expression of JAGN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
JAGN1ENSG00000171135.10380.97720626.40910-0.717404.546703.36070HepG2ABCF1
JAGN1ENSG00000171135.10808.27200652.645400.308402.856202.24030HepG2ACO1
JAGN1ENSG00000171135.10721.714201457.20670-1.0137012.3978011.35300HepG2AKAP1
JAGN1ENSG00000171135.10598.80460302.469100.9852010.885109.79990HepG2BOP1
JAGN1ENSG00000171135.10678.19570508.484600.415402.728301.72260HepG2DDX5
JAGN1ENSG00000171135.10743.397801199.10540-0.689806.147905.25620HepG2DDX6
JAGN1ENSG00000171135.10759.54690624.416700.282502.154601.54490HepG2DKC1
JAGN1ENSG00000171135.10579.09820441.257700.392103.026102.29600HepG2DNAJC21
JAGN1ENSG00000171135.10339.41870475.17730-0.485403.196001.93200HepG2EIF2S2
JAGN1ENSG00000171135.10366.83760632.52060-0.786005.353604.31220HepG2FIP1L1
JAGN1ENSG00000171135.10484.94650720.75530-0.571704.934103.89810HepG2FUBP3
JAGN1ENSG00000171135.10878.569201285.31210-0.548904.861103.96080HepG2FXR1
JAGN1ENSG00000171135.10581.25190314.747900.884907.371006.35650HepG2GPKOW
JAGN1ENSG00000171135.10351.35510538.74530-0.616703.504501.95200HepG2HNRNPA0
JAGN1ENSG00000171135.10264.25210445.48470-0.753505.675704.79390HepG2HNRNPA1
JAGN1ENSG00000171135.10687.843701207.33340-0.8117010.320109.04770HepG2HNRNPK
JAGN1ENSG00000171135.10593.75720300.371500.983009.719208.61920HepG2HNRNPLL
JAGN1ENSG00000171135.10643.37670502.802200.355603.571402.74840HepG2ILF2
JAGN1ENSG00000171135.10773.15130596.628400.373804.066302.83810HepG2KIF1C
JAGN1ENSG00000171135.10349.96820563.24830-0.686505.045302.81370HepG2LSM11
JAGN1ENSG00000171135.101007.869401323.41090-0.393002.628502.01020HepG2NCBP2
JAGN1ENSG00000171135.10365.40260266.350900.456102.200001.53090HepG2NSUN2
JAGN1ENSG00000171135.10393.35070582.48510-0.566402.521001.68040HepG2PABPC1
JAGN1ENSG00000171135.10916.075401280.02360-0.482603.812603.19370HepG2PTBP1
JAGN1ENSG00000171135.10948.74860664.768400.513107.353006.42880HepG2PUS1
JAGN1ENSG00000171135.10868.753201386.52080-0.674506.025205.15320HepG2QKI
JAGN1ENSG00000171135.10473.90930658.33790-0.474203.630202.66260HepG2RBM15
JAGN1ENSG00000171135.10726.952701258.27230-0.791507.095806.05600HepG2RBM25
JAGN1ENSG00000171135.10873.524301424.63060-0.705706.295605.53490HepG2NELFE
JAGN1ENSG00000171135.10844.604001326.69160-0.651506.060005.19690HepG2RECQL
JAGN1ENSG00000171135.10244.21830333.15330-0.448002.250001.69010HepG2RPS19
JAGN1ENSG00000171135.10402.23320635.83670-0.660604.072603.24730HepG2SF3A3
JAGN1ENSG00000171135.10462.82860297.297200.638504.456703.57940HepG2SF3B1
JAGN1ENSG00000171135.10806.642701332.85800-0.724506.170105.34610HepG2SF3B4
JAGN1ENSG00000171135.10378.55910511.21460-0.433403.739003.01040HepG2SMN1
JAGN1ENSG00000171135.10654.23900330.799300.983806.889405.64960HepG2SNRNP70
JAGN1ENSG00000171135.10805.327901391.13840-0.788607.681206.98520HepG2SRSF1
JAGN1ENSG00000171135.10911.097001131.69900-0.312802.043301.55460HepG2SRSF9
JAGN1ENSG00000171135.10675.632501250.19630-0.887809.554808.61470HepG2TAF15
JAGN1ENSG00000171135.10442.42520292.820800.595303.870303.02860HepG2TARDBP
JAGN1ENSG00000171135.10802.258501148.98620-0.518203.166702.27730HepG2TIA1
JAGN1ENSG00000171135.10311.58830478.33620-0.618405.345704.69720HepG2TIAL1
JAGN1ENSG00000171135.10190.89630541.07470-1.5030018.8347017.13930HepG2U2AF1
JAGN1ENSG00000171135.10147.16080380.91900-1.372102.965801.94070HepG2U2AF2
JAGN1ENSG00000171135.10192.09030316.48250-0.720304.636903.64990HepG2UCHL5
JAGN1ENSG00000171135.10593.99130920.77320-0.632406.060504.25320K562ABCF1
JAGN1ENSG00000171135.10494.59050632.37270-0.354502.559702.00940K562AGGF1
JAGN1ENSG00000171135.10305.50160419.99320-0.459203.451901.74320K562AKAP1
JAGN1ENSG00000171135.10428.48750658.00230-0.618805.555204.61260K562AKAP8L
JAGN1ENSG00000171135.101307.895201021.776700.356103.407002.02410K562APOBEC3C
JAGN1ENSG00000171135.10825.582601177.00150-0.511602.429001.87320K562AQR
JAGN1ENSG00000171135.10527.63600690.38350-0.387903.268102.26900K562ATP5C1
JAGN1ENSG00000171135.101080.58500722.107100.581405.725804.83950K562DDX47
JAGN1ENSG00000171135.10548.91180708.12130-0.367403.209302.25720K562DKC1
JAGN1ENSG00000171135.10722.10780497.853700.536405.555404.44190K562EIF3G
JAGN1ENSG00000171135.10694.78440444.562300.644102.331801.57650K562EIF4A3
JAGN1ENSG00000171135.10806.21960462.323500.8022012.0070010.83860K562FXR1
JAGN1ENSG00000171135.10362.68250568.51670-0.648504.591402.72890K562GEMIN5
JAGN1ENSG00000171135.10522.50560726.61720-0.475704.099802.79350K562HNRNPA1
JAGN1ENSG00000171135.10332.15390432.88780-0.382101.961001.44740K562HNRNPC
JAGN1ENSG00000171135.10341.57950531.79290-0.638604.642103.00520K562HNRNPK
JAGN1ENSG00000171135.10474.42670698.34050-0.557702.121801.41030K562KIF1C
JAGN1ENSG00000171135.10245.95270362.23900-0.558602.449601.57700K562KRR1
JAGN1ENSG00000171135.10755.37580558.466300.435603.671702.59580K562MATR3
JAGN1ENSG00000171135.10846.435101234.28280-0.544204.941203.43450K562MSI2
JAGN1ENSG00000171135.10317.96750548.34150-0.786205.203503.86120K562NAA15
JAGN1ENSG00000171135.10483.70960614.49210-0.345302.987302.21540K562NSUN2
JAGN1ENSG00000171135.10344.50200497.90240-0.531403.680402.55390K562PCBP2
JAGN1ENSG00000171135.10388.52990501.05310-0.366902.140301.43620K562POLR2G
JAGN1ENSG00000171135.10929.37060543.709100.7733011.028209.76430K562PTBP1
JAGN1ENSG00000171135.10376.62230652.63050-0.793107.383506.54280K562PUS1
JAGN1ENSG00000171135.10365.45300635.82980-0.799009.668108.58490K562RBM15
JAGN1ENSG00000171135.10732.61430548.597300.417202.818201.71490K562NELFE
JAGN1ENSG00000171135.10205.54700375.78300-0.870402.980201.71570K562SF1
JAGN1ENSG00000171135.10403.70380606.33900-0.586806.266205.07650K562SF3A3
JAGN1ENSG00000171135.10270.07560403.45760-0.579103.029202.01080K562SF3B1
JAGN1ENSG00000171135.10249.51500382.25110-0.615404.538903.43370K562SF3B4
JAGN1ENSG00000171135.10807.72860533.026900.599606.211805.16170K562SRSF1
JAGN1ENSG00000171135.10438.28670597.99170-0.448303.797902.41370K562SRSF7
JAGN1ENSG00000171135.10641.49880502.544100.352102.442701.67220K562SYNCRIP
JAGN1ENSG00000171135.10192.07240356.36150-0.891706.035504.27990K562U2AF1
JAGN1ENSG00000171135.10190.59850367.99290-0.949108.839507.39480K562U2AF2
JAGN1ENSG00000171135.10416.66360565.50610-0.440702.548401.57680K562UCHL5
JAGN1ENSG00000171135.10440.40710557.51880-0.340202.085001.32700K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for JAGN1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of JAGN1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for JAGN1 is not avaliable on ENCORE database.