GATAD2B

General Information

Gene Name       : GATAD2B
Gene ID             : ENSG00000143614.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GATAD2B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GATAD2BENSG00000143614.913.4112.0112.71ENCSR000AEF
HepG2GATAD2BENSG00000143614.94.934.464.70ENCSR985KAT
K562GATAD2BENSG00000143614.910.059.939.99ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GATAD2B is not avaliable on ENCORE database.



Proteins bound to RNA
  • GATAD2B RNA is bound by 34 proteins.  







eCLIP assay for GATAD2B is not avaliable on ENCORE database.





34 proteins are bound to GATAD2B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1153780183153780268-3'-UTR,intron-Distal3.020569.92628K562FAM120A
chr1153779264153779308-3'-UTR,intron-Distal4.6419714.32541HepG2PCBP2
chr1153782544153782646-3'-UTR,intron-Distal3.733489.66621HepG2PCBP2
chr1153779225153779306-3'-UTR,intron-Distal3.050654.57500K562PCBP1
chr1153781604153781697-3'-UTR,intron-Distal4.1053820.07859K562FAM120A
chr1153779206153779302-3'-UTR,intron-Distal4.036326.08987HepG2HNRNPK
chr1153780338153780433-3'-UTR,intron-Distal4.2012521.11416K562FAM120A
chr1153780803153780925-3'-UTR,intron-Distal3.2378014.06811K562FAM120A
chr1153779778153779812-3'-UTR,intron-Distal3.834625.70297K562TIA1
chr1153779184153779247-3'-UTR,intron-Distal3.533314.80214K562HNRNPK
chr1153779197153779264-3'-UTR,intron-Distal5.6321217.51381HepG2PCBP2
chr1153779190153779249-3'-UTR,intron-Distal3.508777.54064HepG2DDX59
chr1153782242153782289-3'-UTR,intron-Distal5.185805.20271K562FAM120A
chr1153779187153779247-3'-UTR,intron-Distal3.293823.38610K562TIA1
chr1153781171153781257-3'-UTR,intron-Distal3.5823724.73795K562FAM120A
chr1153779729153779828-3'-UTR,intron-Distal3.6573815.91589K562FAM120A
chr1153779821153779884-3'-UTR,intron-Distal4.471159.62214HepG2PCBP2
chr1153779249153779314-3'-UTR,intron-Distal4.4908315.75115HepG2DDX59
chr1153779133153779186-3'-UTR,intron-Distal3.796483.04123K562LIN28B
chr1153780286153780338-3'-UTR,intron-Distal4.8063115.56474K562FAM120A
chr1153782552153782652-3'-UTR,intron-Distal5.018976.97460K562PCBP1
chr1153779053153779181-3'-UTR,intron-Distal6.66253400.00000K562PUM2
chr1153782548153782631-3'-UTR,intron-Distal3.246583.72310K562HNRNPK
chr1153779635153779697-3'-UTR,intron-Distal3.334095.18085K562LIN28B
chr1153780461153780520-3'-UTR,intron-Distal5.5524819.58095K562FAM120A
chr1153779788153779856-3'-UTR,intron-Distal3.094576.94036K562PTBP1
chr1153782549153782603-3'-UTR,intron-Distal3.748636.39777K562PTBP1
chr1153779056153779142-3'-UTR,intron-Distal5.353764.34551K562ZC3H11A
chr1153780561153780589-3'-UTR,intron-Distal3.283764.66232K562FAM120A
chr1153780682153780785-3'-UTR,intron-Distal3.1662718.46013K562FAM120A
chr1153895189153895265-5'-UTR,intron-Distal3.353484.92335K562NONO
chr1153895387153895440-5'-UTR,intron-Distal3.790983.07217HepG2NCBP2
chr1153895154153895214-5'-UTR,intron-Distal4.067435.23469HepG2AQR
chr1153784597153784658-CDS,intron-Distal,intron-Proximal3.770686.39986K562SF3B4
chr1153785727153785900-CDS,intron-Distal3.562794.25541HepG2GRWD1
chr1153790532153790648-CDS,intron-Distal,intron-Proximal3.695874.96634HepG2PPIG
chr1153800498153800602-CDS,intron-Distal3.249799.10317K562ZNF622
chr1153791266153791399-CDS,intron-Distal,intron-Proximal3.108634.74766HepG2BCLAF1
chr1153782771153782805-CDS,intron-Distal3.466593.62357HepG2U2AF2
chr1153791339153791399-CDS,intron-Distal,intron-Proximal3.712024.50825K562DDX24
chr1153784604153784660-CDS,intron-Distal,intron-Proximal4.279553.05889HepG2SF3B4
chr1153790524153790643-CDS,intron-Distal3.448778.56897K562DDX24
chr1153788746153788837-CDS,intron-Distal,intron-Proximal4.472644.15208K562RBM15
chr1153790537153790651-CDS,intron-Distal,intron-Proximal3.952013.56019HepG2GRWD1
chr1153791287153791399-CDS,intron-Distal,intron-Proximal3.065998.82455K562ZNF622
chr1153800481153800540-CDS,intron-Distal,intron-Proximal3.257164.34695HepG2BCLAF1
chr1153788740153788881-CDS,intron-Distal,intron-Proximal3.319343.21309HepG2GRWD1
chr1153800484153800611-CDS,intron-Distal,intron-Proximal3.847676.18214HepG2GRWD1
chr1153784492153784609-CDS,intron-Distal,intron-Proximal4.283794.04622HepG2GRWD1
chr1153788689153788821-CDS,intron-Distal,intron-Proximal3.165305.07457HepG2BCLAF1
chr1153800691153800762-CDS,intron-Distal3.725085.03335K562UCHL5
chr1153785849153785948-CDS,intron-Distal,intron-Proximal3.201673.75792K562U2AF2
chr1153785838153785889-CDS,intron-Distal3.941833.15006K562RBM15
chr1153792081153792183-CDS,intron-Distal,intron-Proximal5.663257.00086K562DDX24
chr1153800482153800609-CDS,intron-Distal,intron-Proximal3.075723.73413HepG2PPIG
chr1153784209153784289-CDS,intron-Distal3.273044.31744K562YBX3
chr1153800540153800596-CDS,intron-Distal3.587264.49347K562UCHL5
chr1153824236153824287-intron-Distal4.156793.24150HepG2HLTF
chr1153786764153786823-intron-Distal4.198484.30850HepG2QKI
chr1153894666153894714-intron-Distal3.201784.92335K562NONO
chr1153889188153889249-intron-Distal5.122366.36700K562QKI
chr1153854154153854204-intron-Distal4.796765.05386K562PTBP1
chr1153894033153894083-intron-Distal4.060126.41110K562EXOSC5
chr1153894541153894594-intron-Distal3.073894.33162K562TIA1
chr1153893498153893544-intron-Distal4.550863.86368HepG2HNRNPM
chr1153823560153823653-intron-Distal4.198744.95197K562SAFB2
chr1153894532153894619-intron-Distal3.236187.07738K562NONO
chr1153837054153837099-intron-Distal3.672076.10762HepG2PTBP1
chr1153837050153837096-intron-Distal3.577707.16876K562PTBP1
chr1153893461153893498-intron-Distal3.874555.89423HepG2HNRNPM
chr1153893686153893735-intron-Distal3.237215.34608K562HNRNPM
chr1153823540153823653-intron-Distal3.671254.16915HepG2HLTF
chr1153786721153786824-intron-Distal3.963624.39246K562QKI
chr1153893029153893066-intron-Distal3.550864.63118HepG2HNRNPM
chr1153837101153837152-intron-Distal4.160199.23478K562PTBP1
chr1153892912153892950-intron-Distal3.770023.16028HepG2SUGP2
chr1153854930153854999-intron-Distal3.289585.21690HepG2HNRNPM
chr1153785636153785683-intron-Distal,intron-Proximal3.953183.02181K562PRPF8
chr1153894832153894899-intron-Distal4.494183.92947HepG2DDX59
chr1153894785153894916-intron-Distal4.5173816.21544HepG2PCBP2
chr1153784615153784662-intron-Distal,intron-Proximal5.795907.66684HepG2SF3A3
chr1153788502153788566-intron-Distal3.521134.41411K562TARDBP
chr1153788100153788221-intron-Distal4.4076311.94954K562PTBP1
chr1153893677153893742-intron-Distal4.485749.41947HepG2HNRNPM
chr1153893406153893454-intron-Distal3.138503.10640HepG2SUGP2
chr1153894036153894101-intron-Distal4.326844.66266K562TARDBP
chr1153893570153893610-intron-Distal4.733665.72853HepG2HNRNPM
chr1153864076153864137-intron-Distal4.1396710.68100HepG2PCBP2
chr1153888830153888921-intron-Distal3.686354.78196HepG2PTBP1
chr1153892753153892830-intron-Distal3.256543.64839HepG2HNRNPC
chr1153894437153894532-intron-Distal3.864999.79672K562NONO
chr1153888826153888899-intron-Distal5.356088.50063K562PTBP1
chr1153893565153893607-intron-Distal5.029698.41046K562HNRNPM
chr1153855766153855822-intron-Distal4.688684.90578HepG2HNRNPM
chr1153877591153877639-intron-Distal3.805623.06194K562ILF3
chr1153893442153893498-intron-Distal3.412526.78402K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GATAD2B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GATAD2B is not available on ENCORE database.

  • 69 RBPs can affect the levels of GATAD2B.  








The Knockdown/knockout RNA-Seq assay for GATAD2B is not available on ENCORE database.





69 RBPs can affect the gene expression of GATAD2B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GATAD2BENSG00000143614.7879.16030664.567400.403604.705603.95310HepG2ACO1
GATAD2BENSG00000143614.7694.56530912.18470-0.393202.170901.69320HepG2AKAP1
GATAD2BENSG00000143614.7896.94540667.778400.425603.726102.84860HepG2AKAP8L
GATAD2BENSG00000143614.71329.33440976.340300.445104.126503.41170HepG2BOP1
GATAD2BENSG00000143614.7514.69820802.01250-0.639908.284507.28490HepG2CELF1
GATAD2BENSG00000143614.7693.56340862.31750-0.314203.132102.35060HepG2DAZAP1
GATAD2BENSG00000143614.7387.44340518.88620-0.421402.188901.49340HepG2DDX55
GATAD2BENSG00000143614.71438.183201017.861800.498602.292101.40530HepG2DDX59
GATAD2BENSG00000143614.7615.09680843.03840-0.454803.129402.06120HepG2DDX5
GATAD2BENSG00000143614.7579.70110750.73050-0.373001.932101.40760HepG2DDX6
GATAD2BENSG00000143614.7618.12710850.76600-0.460903.469702.54830HepG2EIF4G1
GATAD2BENSG00000143614.71452.341901138.120900.351604.335603.61240HepG2ETF1
GATAD2BENSG00000143614.7843.03580621.860700.438903.257802.51120HepG2HNRNPC
GATAD2BENSG00000143614.7610.01870809.42250-0.408002.317201.73670HepG2MATR3
GATAD2BENSG00000143614.7484.88870611.47150-0.334602.539601.72510HepG2PARN
GATAD2BENSG00000143614.7856.45770688.489900.314802.873402.25810HepG2PCBP1
GATAD2BENSG00000143614.71101.65890758.712600.538006.589005.68500HepG2QKI
GATAD2BENSG00000143614.7889.89620688.592500.369902.880102.19490HepG2RBM25
GATAD2BENSG00000143614.7896.64250726.174400.304102.686302.07750HepG2RECQL
GATAD2BENSG00000143614.7436.10110550.13580-0.335102.530501.91000HepG2SAFB2
GATAD2BENSG00000143614.7984.85390729.366500.433205.032304.27520HepG2SF3B4
GATAD2BENSG00000143614.71667.435201074.442900.6339014.7089013.79610HepG2SRFBP1
GATAD2BENSG00000143614.7824.70740619.377000.413004.672303.99050HepG2SRSF9
GATAD2BENSG00000143614.7754.57800916.57280-0.280602.447001.85470HepG2SUCLG1
GATAD2BENSG00000143614.71132.54210684.327000.7267012.4161011.35720HepG2TAF15
GATAD2BENSG00000143614.7231.47390346.18240-0.580703.235902.16250HepG2TFIP11
GATAD2BENSG00000143614.7800.66790628.771000.348602.730301.89880HepG2TIA1
GATAD2BENSG00000143614.7478.28600600.27440-0.327702.167201.71360HepG2TIAL1
GATAD2BENSG00000143614.7484.10650605.62410-0.323102.586202.03680HepG2TRIM56
GATAD2BENSG00000143614.71194.85860840.051500.508204.280903.50870HepG2U2AF1
GATAD2BENSG00000143614.7681.096001020.12600-0.5828010.640709.74230HepG2ZNF622
GATAD2BENSG00000143614.72362.604101787.026200.402707.380906.51920K562AGGF1
GATAD2BENSG00000143614.72409.523601963.707200.295102.561801.62200K562AKAP8
GATAD2BENSG00000143614.72729.901001859.490500.553805.339004.41500K562AKAP8L
GATAD2BENSG00000143614.72190.236001477.556500.567804.486103.77250K562AQR
GATAD2BENSG00000143614.72426.638201951.069700.314604.005902.88850K562ATP5C1
GATAD2BENSG00000143614.72867.235102029.936100.498102.567301.55120K562CNOT7
GATAD2BENSG00000143614.71302.62890994.217600.389703.047402.08730K562EFTUD2
GATAD2BENSG00000143614.71047.45290824.749900.344803.351001.85630K562FUS
GATAD2BENSG00000143614.71953.622501457.463300.422605.990104.35030K562GLRX3
GATAD2BENSG00000143614.71117.821301433.78100-0.359103.261402.44310K562GRSF1
GATAD2BENSG00000143614.72501.194901292.313200.952605.517403.57250K562HNRNPA2B1
GATAD2BENSG00000143614.71693.021001011.892700.7424012.0692010.89630K562HNRNPC
GATAD2BENSG00000143614.71170.25160903.610900.372903.226501.98470K562HNRNPF
GATAD2BENSG00000143614.71016.408701311.43330-0.367702.379201.51890K562HNRNPM
GATAD2BENSG00000143614.71504.679302161.65540-0.522705.922004.77180K562HSPD1
GATAD2BENSG00000143614.71714.968301304.319800.394802.690901.68260K562IGF2BP2
GATAD2BENSG00000143614.73003.509901973.353500.605909.903608.07710K562KIF1C
GATAD2BENSG00000143614.72510.319801889.009700.410104.236002.82350K562MAK16
GATAD2BENSG00000143614.73077.403502210.658600.477103.211402.21950K562MBNL1
GATAD2BENSG00000143614.72677.497602135.722400.326102.868101.71450K562MSI2
GATAD2BENSG00000143614.72526.903801549.514300.705504.605303.37660K562NAA15
GATAD2BENSG00000143614.71685.869701340.349200.330802.902301.64440K562NCBP2
GATAD2BENSG00000143614.71935.508301702.591800.184902.311401.62340K562NSUN2
GATAD2BENSG00000143614.71840.476601130.043600.703603.207402.12060K562PABPN1
GATAD2BENSG00000143614.71686.899701340.131100.331903.216501.75970K562PCBP1
GATAD2BENSG00000143614.71516.150201220.063300.313402.439501.52400K562PCBP2
GATAD2BENSG00000143614.71245.45040987.913400.334102.703301.30320K562PHF6
GATAD2BENSG00000143614.71160.438101450.47130-0.321903.036202.19640K562POLR2G
GATAD2BENSG00000143614.71296.742701809.98300-0.481104.862503.72860K562PPIG
GATAD2BENSG00000143614.71087.326001332.14230-0.293002.428301.79980K562PTBP1
GATAD2BENSG00000143614.73111.364102186.162000.509006.731405.45800K562PUF60
GATAD2BENSG00000143614.73005.222401844.041900.7045011.2222010.17840K562PUS1
GATAD2BENSG00000143614.72754.366601796.792800.616204.815904.05370K562RBM15
GATAD2BENSG00000143614.71055.489501344.38980-0.349002.553701.50910K562NELFE
GATAD2BENSG00000143614.71946.045101033.243700.913303.881602.38070K562SF1
GATAD2BENSG00000143614.71411.412901679.96310-0.251302.530901.74880K562SF3A3
GATAD2BENSG00000143614.71945.634101490.116800.384702.704101.74040K562SF3B1
GATAD2BENSG00000143614.71758.866201367.680700.362803.954902.92680K562SF3B4
GATAD2BENSG00000143614.72590.464901186.943801.125906.836904.60660K562SNRNP200
GATAD2BENSG00000143614.72312.534301419.546000.703902.853901.39800K562SUPT6H
GATAD2BENSG00000143614.71345.89860936.718100.522804.364003.06120K562SUPV3L1
GATAD2BENSG00000143614.71143.68780872.638800.390102.707501.78260K562TIAL1
GATAD2BENSG00000143614.73023.442802464.783800.294602.977201.51810K562UBE2L3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GATAD2B is not available on ENCORE database.





1 RBPs can affect the splicing of GATAD2B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSGATAD2BENSG00000143614.7chr1-1537912661537914941537912661537913981537920811537922690.079000.000740.00530longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GATAD2B is not avaliable on ENCORE database.