EFCAB2

General Information

Gene Name       : EFCAB2
Gene ID             : ENSG00000203666.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EFCAB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EFCAB2ENSG00000203666.121.541.801.67ENCSR000AEF
HepG2EFCAB2ENSG00000203666.1213.8721.0317.45ENCSR985KAT
K562EFCAB2ENSG00000203666.1231.5335.2533.39ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EFCAB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EFCAB2 RNA is bound by 11 proteins.  







eCLIP assay for EFCAB2 is not avaliable on ENCORE database.





11 proteins are bound to EFCAB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1245250713245250801+3'-UTR,intron-Distal4.053133.49011K562KHSRP
chr1245250239245250337+3'-UTR,intron-Distal,polyA_site4.410719.94910K562KHSRP
chr1245133689245133763+5'-UTR,CDS,intron-Distal,intron-Proximal4.329384.52089HepG2NCBP2
chr1245250526245250574+CDS,intron-Distal,intron-Proximal4.527314.13847K562AQR
chr1245251589245251663+intron-Distal3.529483.51804HepG2HNRNPL
chr1245253544245253654+intron-Distal3.960715.23323K562GTF2F1
chr1245134019245134100+intron-Distal3.748254.70992HepG2DDX59
chr1245207310245207335+intron-Distal6.1789612.17956K562SMNDC1
chr1245207308245207322+intron-Distal5.640564.92664HepG2SMNDC1
chr1245133993245134035+intron-Distal3.557634.09621HepG2PCBP2
chr1245207322245207342+intron-Distal5.640564.92664HepG2SMNDC1
chr1245207313245207342+intron-Distal3.704434.93376K562PRPF8
chr1245144075245144183+intron-Distal3.576224.79863K562TARDBP
chr1245134254245134309+intron-Distal3.417333.96999HepG2CSTF2T
chr1245253635245253756+intron-Distal4.667717.47576K562KHSRP
chr1245134035245134153+intron-Distal4.4807112.74229HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EFCAB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EFCAB2 is not available on ENCORE database.

  • 65 RBPs can affect the levels of EFCAB2.  








The Knockdown/knockout RNA-Seq assay for EFCAB2 is not available on ENCORE database.





65 RBPs can affect the gene expression of EFCAB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EFCAB2ENSG00000203666.8326.00980208.061900.647802.955802.40820HepG2AKAP1
EFCAB2ENSG00000203666.8271.13280172.148900.655203.132202.29650HepG2ASCC1
EFCAB2ENSG00000203666.895.15650231.01330-1.279608.642207.65420HepG2BOP1
EFCAB2ENSG00000203666.8107.80410165.45140-0.618002.733602.07160HepG2CKAP4
EFCAB2ENSG00000203666.8288.73770212.080900.445001.909401.32690HepG2CPSF6
EFCAB2ENSG00000203666.8137.65130205.37570-0.577202.365701.43020HepG2DDX5
EFCAB2ENSG00000203666.8109.34830164.57830-0.589801.986101.47390HepG2EIF2S1
EFCAB2ENSG00000203666.8373.19370288.808600.369701.953901.42950HepG2ETF1
EFCAB2ENSG00000203666.8130.94100238.32460-0.864004.081003.16120HepG2FIP1L1
EFCAB2ENSG00000203666.8115.42550188.96140-0.711102.824202.18420HepG2NCBP2
EFCAB2ENSG00000203666.8145.25080276.85960-0.930606.893905.69730HepG2NOL12
EFCAB2ENSG00000203666.8177.23620264.29400-0.576502.769502.17240HepG2PUF60
EFCAB2ENSG00000203666.8212.47770280.56820-0.401002.028701.50480HepG2PUM1
EFCAB2ENSG00000203666.8196.18260280.35800-0.515102.492101.85500HepG2PUM2
EFCAB2ENSG00000203666.8188.81100289.50550-0.616602.886102.19750HepG2SF3A3
EFCAB2ENSG00000203666.8131.90020227.08100-0.783803.857303.03580HepG2SF3B1
EFCAB2ENSG00000203666.8177.96720253.43410-0.510002.606701.92310HepG2SLBP
EFCAB2ENSG00000203666.8369.43490252.668500.548002.140901.45670HepG2SNRNP70
EFCAB2ENSG00000203666.8364.28380272.639900.418002.521602.03560HepG2SRFBP1
EFCAB2ENSG00000203666.8151.08730244.34840-0.693602.897201.86890HepG2SRSF3
EFCAB2ENSG00000203666.8523.35270130.016802.0090044.6718042.99320HepG2SRSF9
EFCAB2ENSG00000203666.888.85520159.13010-0.840703.117201.81460HepG2STAU1
EFCAB2ENSG00000203666.8237.13530157.920100.586402.043601.44940HepG2SUPV3L1
EFCAB2ENSG00000203666.8314.30160143.649501.1295010.376509.40110HepG2TAF15
EFCAB2ENSG00000203666.8112.49660203.83710-0.857504.149903.38760HepG2U2AF1
EFCAB2ENSG00000203666.8115.62560273.32870-1.241206.836105.49070HepG2UBE2L3
EFCAB2ENSG00000203666.8182.74990282.37290-0.627704.414203.76550HepG2ZNF622
EFCAB2ENSG00000203666.8257.21100359.64320-0.483603.029602.43960K562AGGF1
EFCAB2ENSG00000203666.8294.75230395.17310-0.423002.358801.46280K562AKAP8
EFCAB2ENSG00000203666.8253.33330374.22010-0.562903.487702.75080K562AKAP8L
EFCAB2ENSG00000203666.8163.63710536.35500-1.7127021.3987019.94180K562AQR
EFCAB2ENSG00000203666.8304.38820392.63740-0.367302.107601.31810K562ATP5C1
EFCAB2ENSG00000203666.8303.32830447.81930-0.562003.376902.41280K562BOP1
EFCAB2ENSG00000203666.8327.83200508.49830-0.633304.177402.33780K562CKAP4
EFCAB2ENSG00000203666.8414.18240656.89880-0.665403.380902.18360K562CNOT7
EFCAB2ENSG00000203666.8272.44290476.17150-0.805507.416506.12670K562CPSF6
EFCAB2ENSG00000203666.8161.24450231.75970-0.523402.460401.47130K562CSTF2
EFCAB2ENSG00000203666.8133.98780275.56330-1.040306.098004.69900K562EFTUD2
EFCAB2ENSG00000203666.8213.05240510.58870-1.261006.478105.13970K562FIP1L1
EFCAB2ENSG00000203666.8390.43530260.526400.583603.330802.07410K562FKBP4
EFCAB2ENSG00000203666.8173.74200258.91140-0.575502.980701.58190K562FUS
EFCAB2ENSG00000203666.8330.23640454.63550-0.461202.671601.88990K562GPKOW
EFCAB2ENSG00000203666.8188.59100300.08890-0.670103.779803.09510K562HNRNPC
EFCAB2ENSG00000203666.8191.69250292.07070-0.607503.842602.78790K562HNRNPU
EFCAB2ENSG00000203666.8297.97170397.15860-0.414502.508601.72680K562KIF1C
EFCAB2ENSG00000203666.8221.60030388.17870-0.808804.511503.28470K562KRR1
EFCAB2ENSG00000203666.8223.09080380.16420-0.769005.359203.69730K562MAK16
EFCAB2ENSG00000203666.8232.68580312.04160-0.423402.138901.33800K562MATR3
EFCAB2ENSG00000203666.8298.42960444.91550-0.576104.215103.05450K562MBNL1
EFCAB2ENSG00000203666.8335.60100443.77120-0.403102.203601.42180K562METAP2
EFCAB2ENSG00000203666.8164.27790406.80260-1.308206.812105.04820K562PABPN1
EFCAB2ENSG00000203666.8283.52050483.80430-0.771002.860201.38280K562PPP1R8
EFCAB2ENSG00000203666.8206.35130303.75220-0.557803.371902.64700K562PTBP1
EFCAB2ENSG00000203666.8274.89110371.15960-0.433202.196101.70090K562PUS1
EFCAB2ENSG00000203666.8245.05870361.60930-0.561303.676303.00650K562RBM15
EFCAB2ENSG00000203666.8212.91120500.49880-1.233106.027503.53560K562RBM39
EFCAB2ENSG00000203666.8156.56430372.12580-1.249004.803303.07520K562SF1
EFCAB2ENSG00000203666.8172.87850238.56120-0.464602.136501.38620K562SF3B4
EFCAB2ENSG00000203666.8204.13130453.80070-1.152605.494903.38280K562SFPQ
EFCAB2ENSG00000203666.8230.20290427.21690-0.892103.351901.94870K562SNRNP200
EFCAB2ENSG00000203666.8272.95600511.11880-0.905003.594301.88860K562SUPT6H
EFCAB2ENSG00000203666.8331.46040241.137800.458902.474901.70040K562SYNCRIP
EFCAB2ENSG00000203666.8193.38430301.38970-0.640203.641002.82540K562TARDBP
EFCAB2ENSG00000203666.8205.16160290.71520-0.502802.575301.78860K562TIA1
EFCAB2ENSG00000203666.8201.48810285.19580-0.501302.332701.34660K562TRA2A
EFCAB2ENSG00000203666.8156.43490274.93040-0.813504.975503.61930K562TRIM56
EFCAB2ENSG00000203666.8127.15300229.67710-0.853005.310904.20290K562U2AF2
EFCAB2ENSG00000203666.8186.80290274.84020-0.557102.395901.45490K562UCHL5
EFCAB2ENSG00000203666.8189.68150279.78810-0.560802.526301.38680K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EFCAB2 is not available on ENCORE database.





5 RBPs can affect the splicing of EFCAB2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEFCAB2ENSG00000203666.8chr1+2451805432451806282451336302451337452452226872452227600.186000.005930.08436includedK562SF3B4
SEEFCAB2ENSG00000203666.8chr1+2451654222451655342451332832451337452451805432451806280.272000.000010.00486includedK562MATR3
SEEFCAB2ENSG00000203666.8chr1+245165422245165534245133283245133745245180543245180628-0.173000.000340.05238excludedK562HNRNPM
SEEFCAB2ENSG00000203666.8chr1+245180543245180628245133630245133745245222687245222760-0.330000.000730.05280excludedHepG2HNRNPL
SEEFCAB2ENSG00000203666.8chr1+2451654222451655342451336572451337452451805432451806280.199000.000790.05376includedK562HNRNPL
SEEFCAB2ENSG00000203666.8chr1+2451365902451367292451337242451337452451805432451806280.052000.006800.09157includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EFCAB2 is not avaliable on ENCORE database.