EFCAB11

General Information

Gene Name       : EFCAB11
Gene ID             : ENSG00000140025.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EFCAB11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EFCAB11ENSG00000140025.1511.4710.0610.77ENCSR000AEF
HepG2EFCAB11ENSG00000140025.1514.4925.8820.18ENCSR985KAT
K562EFCAB11ENSG00000140025.1511.9910.3811.19ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EFCAB11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • EFCAB11 RNA is bound by 4 proteins.  







eCLIP assay for EFCAB11 is not avaliable on ENCORE database.





4 proteins are bound to EFCAB11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr149034225890342416-intron-Distal3.262945.11767HepG2QKI
chr149031707890317133-intron-Distal5.232049.73701HepG2QKI
chr149039305490393193-intron-Distal4.651657.00634K562KHSRP
chr149037305390373191-intron-Distal3.370803.94088HepG2QKI
chr149035880690358861-intron-Distal3.855314.83406HepG2QKI
chr149033928590339325-intron-Distal3.965323.50357HepG2QKI
chr149038595890386038-intron-Distal4.852546.23638HepG2QKI
chr149028958090289642-intron-Distal3.118183.35050HepG2SUGP2
chr149029797290298036-intron-Distal3.681103.64762HepG2QKI
chr149035202490352099-intron-Distal3.264593.10639HepG2PTBP1
chr149036406990364258-intron-Distal3.607853.06150K562KHSRP
chr149031713790317208-intron-Distal3.788775.75173HepG2QKI
chr149029073690290834-intron-Distal3.749403.59803HepG2PTBP1
chr149030120090301329-intron-Distal5.069717.43163HepG2QKI
chr149038195090382047-intron-Distal3.253573.35585HepG2QKI
chr149033932590339429-intron-Distal5.7562211.50595HepG2QKI
chr149028969490289757-intron-Distal3.873543.29248HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EFCAB11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EFCAB11 is not available on ENCORE database.

  • 85 RBPs can affect the levels of EFCAB11.  








The Knockdown/knockout RNA-Seq assay for EFCAB11 is not available on ENCORE database.





85 RBPs can affect the gene expression of EFCAB11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EFCAB11ENSG00000140025.11133.40880214.51450-0.685203.973803.26960HepG2ACO1
EFCAB11ENSG00000140025.11143.37840224.95870-0.649802.403501.90430HepG2AKAP1
EFCAB11ENSG00000140025.11123.93690215.48770-0.798004.870603.87790HepG2AKAP8L
EFCAB11ENSG00000140025.11107.27230186.13940-0.795103.310402.45070HepG2ASCC1
EFCAB11ENSG00000140025.11175.58340298.52320-0.765705.633204.71280HepG2AUH
EFCAB11ENSG00000140025.11123.31670225.09330-0.868203.821902.78150HepG2BCLAF1
EFCAB11ENSG00000140025.1180.03300215.27790-1.427509.622608.59210HepG2BOP1
EFCAB11ENSG00000140025.11134.85980226.49730-0.748003.859002.97090HepG2CALR
EFCAB11ENSG00000140025.11113.79470176.84360-0.636002.248601.54770HepG2CIRBP
EFCAB11ENSG00000140025.1187.47460214.42620-1.2935010.787609.65000HepG2CKAP4
EFCAB11ENSG00000140025.1157.48420197.63760-1.7816012.1188010.79750HepG2CPSF6
EFCAB11ENSG00000140025.11163.80290333.32790-1.025009.614408.55310HepG2CELF1
EFCAB11ENSG00000140025.11226.24780358.38800-0.663605.582604.58020HepG2DAZAP1
EFCAB11ENSG00000140025.11100.64090177.21010-0.816203.712202.93590HepG2DDX21
EFCAB11ENSG00000140025.11117.94230254.65830-1.110505.725004.66100HepG2DDX55
EFCAB11ENSG00000140025.11105.26150224.43170-1.092304.821003.54380HepG2DDX59
EFCAB11ENSG00000140025.1144.81630185.09750-2.0462012.9206011.70570HepG2DDX6
EFCAB11ENSG00000140025.1194.50390169.41710-0.842104.188903.33890HepG2DNAJC21
EFCAB11ENSG00000140025.11104.59680167.91250-0.682903.359802.65410HepG2DNAJC2
EFCAB11ENSG00000140025.11102.00080163.19860-0.678002.360901.34350HepG2AGO1
EFCAB11ENSG00000140025.1160.35140177.96350-1.560108.835907.81490HepG2EIF2S1
EFCAB11ENSG00000140025.1187.68870151.50090-0.788902.730001.83310HepG2EIF3D
EFCAB11ENSG00000140025.11115.46240191.47520-0.729702.466201.81500HepG2EIF4B
EFCAB11ENSG00000140025.11240.88350353.59010-0.553703.730002.78250HepG2EIF4G1
EFCAB11ENSG00000140025.11204.63040338.71340-0.727004.589703.55780HepG2EIF4G2
EFCAB11ENSG00000140025.11209.51950342.71400-0.709905.457504.66100HepG2ETF1
EFCAB11ENSG00000140025.1180.51150135.38200-0.749802.897001.70080HepG2FAM120A
EFCAB11ENSG00000140025.11114.89750184.07170-0.679902.642301.99140HepG2G3BP1
EFCAB11ENSG00000140025.11142.96330224.03950-0.648102.585601.96370HepG2GPKOW
EFCAB11ENSG00000140025.11221.69180329.37910-0.571203.689902.63560HepG2HNRNPA2B1
EFCAB11ENSG00000140025.11206.22070326.45760-0.662705.066804.17740HepG2HNRNPL
EFCAB11ENSG00000140025.11129.65860213.80480-0.721603.072102.41310HepG2HNRNPLL
EFCAB11ENSG00000140025.11127.53360188.99000-0.567402.617402.02860HepG2HNRNPU
EFCAB11ENSG00000140025.1194.06270187.11170-0.992204.616303.76420HepG2IGF2BP2
EFCAB11ENSG00000140025.11165.83750298.08210-0.845904.461403.39700HepG2LARP4
EFCAB11ENSG00000140025.11235.79160355.37800-0.591804.008703.09130HepG2NOL12
EFCAB11ENSG00000140025.11109.11670233.77810-1.099304.421503.01820HepG2NONO
EFCAB11ENSG00000140025.1189.67780181.96480-1.020804.965304.00820HepG2PABPC4
EFCAB11ENSG00000140025.1195.99910200.02390-1.059105.204303.80960HepG2PCBP2
EFCAB11ENSG00000140025.1163.51070196.51780-1.629609.604208.20470HepG2PRPF8
EFCAB11ENSG00000140025.11108.58220196.96380-0.859104.285403.63670HepG2PTBP1
EFCAB11ENSG00000140025.11217.93540339.24530-0.638403.884503.19170HepG2PUF60
EFCAB11ENSG00000140025.11181.31540360.13070-0.9900010.768509.76070HepG2PUM1
EFCAB11ENSG00000140025.11206.28100359.86340-0.802806.165605.17790HepG2PUM2
EFCAB11ENSG00000140025.11155.23320218.49080-0.493102.382301.79940HepG2PUS1
EFCAB11ENSG00000140025.11111.25940213.36890-0.939404.456503.69020HepG2QKI
EFCAB11ENSG00000140025.11103.97880192.98610-0.892203.016502.28290HepG2RAVER1
EFCAB11ENSG00000140025.11171.05730283.62700-0.729502.754801.89940HepG2RBM15
EFCAB11ENSG00000140025.11125.71500286.45190-1.188109.909209.06550HepG2RBM22
EFCAB11ENSG00000140025.11158.78860239.50650-0.593002.614601.65140HepG2RBM27
EFCAB11ENSG00000140025.1196.52560181.42160-0.910404.356203.52840HepG2RPLP0
EFCAB11ENSG00000140025.1185.49370189.64720-1.149405.444804.14390HepG2RPS10
EFCAB11ENSG00000140025.1175.90510147.40670-0.957504.087503.35540HepG2RPS19
EFCAB11ENSG00000140025.11131.82270220.88820-0.744703.450702.55710HepG2RPS2
EFCAB11ENSG00000140025.1145.22640194.40360-2.1038013.4489011.93700HepG2RRP9
EFCAB11ENSG00000140025.1196.55020211.62560-1.132206.483105.44000HepG2SF3B1
EFCAB11ENSG00000140025.11136.34250205.10870-0.589202.575502.00100HepG2SF3B4
EFCAB11ENSG00000140025.11208.59940325.29740-0.641004.681703.80590HepG2SLBP
EFCAB11ENSG00000140025.11114.29440235.47020-1.042804.700203.66980HepG2SNRNP70
EFCAB11ENSG00000140025.11109.54570323.54810-1.5624016.2877015.33760HepG2SRFBP1
EFCAB11ENSG00000140025.11191.12370334.96350-0.809506.622905.71170HepG2SRSF5
EFCAB11ENSG00000140025.11110.26880165.47100-0.585602.282601.64610HepG2SRSF7
EFCAB11ENSG00000140025.1153.39790174.14280-1.705408.242307.38050HepG2SRSF9
EFCAB11ENSG00000140025.11214.81320280.93610-0.387201.816801.37990HepG2SSB
EFCAB11ENSG00000140025.11281.32610380.93880-0.437302.885002.25270HepG2SUCLG1
EFCAB11ENSG00000140025.1191.11390168.11750-0.883703.725302.64680HepG2SUPT6H
EFCAB11ENSG00000140025.1174.94670253.52860-1.7582012.0115010.76730HepG2SUPV3L1
EFCAB11ENSG00000140025.11128.70110208.38850-0.695302.981602.23230HepG2TARDBP
EFCAB11ENSG00000140025.1174.60250169.94360-1.187805.829404.46400HepG2TFIP11
EFCAB11ENSG00000140025.11113.75850176.81070-0.636202.252801.49650HepG2TIA1
EFCAB11ENSG00000140025.1199.30720183.64980-0.887004.619404.00800HepG2TIAL1
EFCAB11ENSG00000140025.11243.31540331.43950-0.445902.134201.37430HepG2TUFM
EFCAB11ENSG00000140025.11125.54550292.43520-1.219903.273402.19890HepG2U2AF2
EFCAB11ENSG00000140025.11197.36530350.83090-0.829904.448403.36960HepG2UBE2L3
EFCAB11ENSG00000140025.1144.85360149.78090-1.739609.895508.46010HepG2UCHL5
EFCAB11ENSG00000140025.1192.02000211.07630-1.197709.085507.94460HepG2UPF1
EFCAB11ENSG00000140025.1187.26330232.14520-1.4116013.3300012.35540HepG2ZNF622
EFCAB11ENSG00000140025.11155.57600266.67980-0.777504.090303.40440K562AQR
EFCAB11ENSG00000140025.11163.83040282.59300-0.786503.254802.08640K562CNOT7
EFCAB11ENSG00000140025.11109.11500164.35670-0.591002.104501.41210K562CPSF6
EFCAB11ENSG00000140025.1177.43800141.42310-0.868903.671702.73000K562EIF4A3
EFCAB11ENSG00000140025.1178.09430133.97460-0.778702.241201.41080K562KRR1
EFCAB11ENSG00000140025.11117.41670189.83720-0.693103.430202.38920K562MATR3
EFCAB11ENSG00000140025.11123.97190253.98060-1.034702.391601.48530K562PABPN1
EFCAB11ENSG00000140025.11114.71770184.80910-0.687903.341902.61960K562PTBP1
EFCAB11ENSG00000140025.11157.67280219.24880-0.475601.887501.38080K562RBM15
EFCAB11ENSG00000140025.1195.42760232.37920-1.284002.658501.49050K562SF1
EFCAB11ENSG00000140025.1199.84860181.17220-0.859504.093803.24000K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EFCAB11 is not available on ENCORE database.





5 RBPs can affect the splicing of EFCAB11 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEFCAB11ENSG00000140025.11chr14-9039085690391021902634709026366890397884903979750.367000.000090.00274includedK562SRSF1
SEEFCAB11ENSG00000140025.11chr14-9039085690391021902634709026366890397884903979750.636000.000000.00000includedK562MATR3
SEEFCAB11ENSG00000140025.11chr14-9039085690391021902634709026366890397884903979750.095000.000440.06406includedK562DROSHA
SEEFCAB11ENSG00000140025.11chr14-9039085690391021902634709026366890397884903979750.161000.004530.05776includedK562PUS1
SEEFCAB11ENSG00000140025.11chr14-9039085690391021902634709026366890397884903979750.565000.000000.00004includedHepG2MATR3
SEEFCAB11ENSG00000140025.11chr14-903770409037708890263500902636689039788490397975-0.379000.000000.00003excludedHepG2TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EFCAB11 is not avaliable on ENCORE database.