DERA

General Information

Gene Name       : DERA
Gene ID             : ENSG00000023697.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: DERA)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DERAENSG00000023697.1237.3025.1131.20ENCSR000AEF
HepG2DERAENSG00000023697.1226.2741.2833.77ENCSR985KAT
K562DERAENSG00000023697.124.084.004.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for DERA is not avaliable on ENCORE database.



Proteins bound to RNA
  • DERA RNA is bound by 5 proteins.  







eCLIP assay for DERA is not avaliable on ENCORE database.





5 proteins are bound to DERA RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr121611583316115894+5'-UTR,CDS,intron-Proximal3.398693.59112HepG2PPIG
chr121611578716115891+5'-UTR,CDS,intron-Proximal3.326243.85127HepG2GRWD1
chr121611569516115784+5'-UTR,CDS,intron-Proximal3.867625.09028HepG2U2AF2
chr121611874816118918+intron-Distal3.020073.44626HepG2PTBP1
chr121611896816119043+intron-Distal4.319193.27829HepG2MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DERA is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DERA is not available on ENCORE database.

  • 69 RBPs can affect the levels of DERA.  








The Knockdown/knockout RNA-Seq assay for DERA is not available on ENCORE database.





69 RBPs can affect the gene expression of DERA :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DERAENSG00000023697.8452.70680554.14210-0.291702.059201.52000HepG2ACO1
DERAENSG00000023697.8610.58620964.25420-0.659205.088304.39380HepG2AKAP1
DERAENSG00000023697.8689.75270901.46920-0.386204.080103.27660HepG2AUH
DERAENSG00000023697.8352.01470515.42170-0.550102.813201.90840HepG2BCLAF1
DERAENSG00000023697.8169.30390557.50680-1.7194025.6711024.15370HepG2BOP1
DERAENSG00000023697.8484.23110872.73980-0.849903.635902.50330HepG2CCAR1
DERAENSG00000023697.8360.33390554.03890-0.620707.287206.30270HepG2CKAP4
DERAENSG00000023697.8718.42010860.16940-0.259801.966501.40700HepG2CELF1
DERAENSG00000023697.8370.94770512.51000-0.466404.582903.54600HepG2DDX19B
DERAENSG00000023697.8354.55720583.11470-0.717804.322403.37890HepG2DDX55
DERAENSG00000023697.8541.53770793.40990-0.551003.614002.91600HepG2DDX6
DERAENSG00000023697.8316.49220450.83710-0.510404.660903.85030HepG2DNAJC2
DERAENSG00000023697.8383.94020762.80640-0.9904010.831209.70620HepG2EIF2S1
DERAENSG00000023697.8366.50160843.03040-1.2018014.4033012.96720HepG2EIF4A3
DERAENSG00000023697.8687.66650874.08160-0.346102.242701.50440HepG2EIF4G2
DERAENSG00000023697.8490.403801034.98160-1.0776023.9483022.47880HepG2ETF1
DERAENSG00000023697.8285.71680512.69340-0.843503.114402.03440HepG2FTO
DERAENSG00000023697.8296.59850421.17230-0.505903.023202.20490HepG2FUBP3
DERAENSG00000023697.8592.00980850.46210-0.522603.861203.05320HepG2FXR1
DERAENSG00000023697.8493.67340788.99160-0.676505.569004.63820HepG2G3BP1
DERAENSG00000023697.8426.20110574.08690-0.429702.548801.57670HepG2GNB2L1
DERAENSG00000023697.8358.14040459.23700-0.358701.903101.35580HepG2HNRNPA1
DERAENSG00000023697.8483.22870798.77770-0.725107.022305.94620HepG2HNRNPK
DERAENSG00000023697.8652.75390842.50470-0.368104.033903.23230HepG2HNRNPL
DERAENSG00000023697.8403.48100507.43130-0.330702.241001.68990HepG2HNRNPU
DERAENSG00000023697.8432.34140580.68020-0.425603.302502.51670HepG2IGF2BP1
DERAENSG00000023697.8426.51280920.91670-1.110505.169304.02130HepG2LARP4
DERAENSG00000023697.8564.62660850.75840-0.591504.674003.82770HepG2MAGOH
DERAENSG00000023697.8287.05870479.36570-0.739802.391301.40970HepG2METAP2
DERAENSG00000023697.8328.15720477.12400-0.540003.752602.81380HepG2MSI2
DERAENSG00000023697.8388.03460875.70830-1.1743015.0193013.62460HepG2NCBP2
DERAENSG00000023697.8727.40920917.12050-0.334302.802102.03320HepG2NOL12
DERAENSG00000023697.8445.78690775.23800-0.7983012.9948011.83240HepG2PCBP1
DERAENSG00000023697.8372.35370619.81890-0.735204.688403.36360HepG2PCBP2
DERAENSG00000023697.8579.04310788.79790-0.446004.633703.96570HepG2PTBP1
DERAENSG00000023697.81151.68240875.472300.395503.404302.75220HepG2PUF60
DERAENSG00000023697.8561.24070929.35310-0.7276014.1455013.02240HepG2PUM1
DERAENSG00000023697.8670.85540928.67390-0.469204.623403.76700HepG2PUM2
DERAENSG00000023697.8571.57690854.36380-0.579906.712105.80110HepG2QKI
DERAENSG00000023697.8653.56390865.05840-0.404503.508202.94410HepG2RBM22
DERAENSG00000023697.8703.88090877.88600-0.318702.859102.31100HepG2NELFE
DERAENSG00000023697.8588.47840817.57760-0.474405.374504.55070HepG2RECQL
DERAENSG00000023697.8501.75450635.31750-0.340502.155901.54380HepG2RPLP0
DERAENSG00000023697.8337.08160587.50710-0.801505.152003.88570HepG2RPS10
DERAENSG00000023697.8197.01640445.57230-1.177305.386604.56160HepG2RPS19
DERAENSG00000023697.8393.79190625.52360-0.667605.585004.47140HepG2RPS2
DERAENSG00000023697.8271.74500445.15390-0.712103.937103.01920HepG2RRP9
DERAENSG00000023697.8580.82940821.30450-0.499805.740504.94100HepG2SF3B4
DERAENSG00000023697.8269.07160526.99440-0.9698014.9209013.60880HepG2SMN1
DERAENSG00000023697.8439.55450609.62660-0.471902.455801.55790HepG2SMNDC1
DERAENSG00000023697.8443.71680977.06120-1.1388028.0199026.86050HepG2SRFBP1
DERAENSG00000023697.8631.72150864.40200-0.452405.072404.26510HepG2SRSF5
DERAENSG00000023697.8409.20240579.37500-0.501705.130904.22960HepG2SRSF7
DERAENSG00000023697.8592.20130848.33700-0.518506.670705.93900HepG2SSB
DERAENSG00000023697.8228.52180334.47370-0.549602.670201.59080HepG2STIP1
DERAENSG00000023697.8827.48470983.06270-0.248602.270901.69730HepG2SUCLG1
DERAENSG00000023697.8358.47800539.65250-0.590104.160803.29390HepG2TARDBP
DERAENSG00000023697.8388.51250497.46990-0.356602.572702.02460HepG2TRIM56
DERAENSG00000023697.8534.66450855.30030-0.677807.646306.08390HepG2TUFM
DERAENSG00000023697.8401.68850719.95830-0.841802.210601.33930HepG2U2AF2
DERAENSG00000023697.8342.39670531.71680-0.635002.629901.65280HepG2UPF2
DERAENSG00000023697.8316.97300489.15230-0.625905.916205.09530HepG2UTP3
DERAENSG00000023697.8685.99010557.219600.299802.623302.08700HepG2ZNF622
DERAENSG00000023697.8410.92020597.54760-0.540203.044501.67910HepG2ZRANB2
DERAENSG00000023697.8105.69210171.33980-0.697002.252201.71410K562AQR
DERAENSG00000023697.8219.42190102.690901.095307.687706.57780K562EIF2S2
DERAENSG00000023697.847.62030111.44570-1.226704.340002.93540K562IGF2BP2
DERAENSG00000023697.8232.6909073.883101.6550011.562309.86140K562PCBP3
DERAENSG00000023697.8161.7954056.671201.513409.324707.89090K562POLR2G
DERAENSG00000023697.8278.10670187.428700.569202.476801.70650K562PUF60
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DERA is not available on ENCORE database.





1 RBPs can affect the splicing of DERA :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEDERAENSG00000023697.8chr12+1606462416064687160642921606434816109869161099670.161000.000510.05948includedHepG2PCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for DERA is not avaliable on ENCORE database.