CTNS

General Information

Gene Name       : CTNS
Gene ID             : ENSG00000040531.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTNS)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTNSENSG00000040531.143.144.623.88ENCSR000AEF
HepG2CTNSENSG00000040531.148.117.767.93ENCSR985KAT
K562CTNSENSG00000040531.144.845.275.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTNS is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTNS RNA is bound by 2 proteins.  







eCLIP assay for CTNS is not avaliable on ENCORE database.





2 proteins are bound to CTNS RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1735453513545510+intron-Distal5.715978.53131K562EIF4G2
chr1735596963559775+intron-Proximal3.108513.60809HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTNS is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTNS is not available on ENCORE database.

  • 76 RBPs can affect the levels of CTNS.  








The Knockdown/knockout RNA-Seq assay for CTNS is not available on ENCORE database.





76 RBPs can affect the gene expression of CTNS :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTNSENSG00000040531.10514.62880358.106400.523003.130102.29460HepG2ASCC1
CTNSENSG00000040531.10837.25340371.803401.1710017.6624016.34280HepG2BOP1
CTNSENSG00000040531.10532.43850340.226900.646004.533303.55680HepG2CIRBP
CTNSENSG00000040531.10371.60860190.718700.962205.353704.28750HepG2CNOT7
CTNSENSG00000040531.10211.16790341.33130-0.692804.021103.20650HepG2CPSF6
CTNSENSG00000040531.10494.44090335.443900.559602.177501.50780HepG2DAZAP1
CTNSENSG00000040531.10656.78710414.587100.663705.056504.23280HepG2DDX3X
CTNSENSG00000040531.10250.95200387.60820-0.627202.384201.47740HepG2DDX59
CTNSENSG00000040531.10247.21140356.15650-0.526802.371301.79590HepG2DDX6
CTNSENSG00000040531.10739.24780540.945400.450504.606803.86680HepG2ETF1
CTNSENSG00000040531.10214.25930298.58730-0.478802.232901.51940HepG2FUBP3
CTNSENSG00000040531.10547.29190369.239600.567703.717502.99790HepG2HNRNPLL
CTNSENSG00000040531.10324.19630234.526500.467002.977102.35030HepG2HNRNPU
CTNSENSG00000040531.10844.25170359.954801.2298016.8386015.34020HepG2IGF2BP2
CTNSENSG00000040531.10335.82020239.560900.487203.591102.76600HepG2ILF2
CTNSENSG00000040531.10908.67920432.954601.0695010.954009.29720HepG2LARP4
CTNSENSG00000040531.10708.30650381.892700.891108.668007.52170HepG2MAGOH
CTNSENSG00000040531.10557.53210384.025900.537803.060102.39950HepG2MATR3
CTNSENSG00000040531.10484.15250364.237900.410502.523701.75010HepG2MSI2
CTNSENSG00000040531.10662.09630393.068500.752206.112505.18800HepG2NCBP2
CTNSENSG00000040531.10235.39040327.41040-0.476002.169601.50480HepG2NSUN2
CTNSENSG00000040531.10508.36650317.474200.679105.024704.25040HepG2PUF60
CTNSENSG00000040531.10489.70170336.967400.539203.511102.85860HepG2PUM1
CTNSENSG00000040531.10516.76760336.749500.617703.912203.11720HepG2PUM2
CTNSENSG00000040531.10453.02640328.317400.464403.726503.03420HepG2PUS1
CTNSENSG00000040531.10646.51170452.138000.515805.053904.40680HepG2RBM22
CTNSENSG00000040531.10259.80970357.29770-0.459702.445401.80790HepG2RBM25
CTNSENSG00000040531.10382.41220256.654700.575202.718901.73380HepG2RBM27
CTNSENSG00000040531.10907.91510485.092300.9042011.7922010.55200HepG2RPLP0
CTNSENSG00000040531.10354.28030211.554900.743805.154204.34500HepG2RPS19
CTNSENSG00000040531.10418.95990236.681200.823805.464504.36200HepG2RPS2
CTNSENSG00000040531.10340.24880191.393100.830004.672803.63580HepG2RPS3A
CTNSENSG00000040531.10372.36600241.624300.623903.101801.95950HepG2RPS5
CTNSENSG00000040531.10312.74710212.289400.558902.652101.73300HepG2SERBP1
CTNSENSG00000040531.10478.27920365.467200.388002.043101.43160HepG2SF3B1
CTNSENSG00000040531.10387.74190243.560100.670706.102605.20590HepG2SMN1
CTNSENSG00000040531.10260.49110406.64880-0.642502.875302.07830HepG2SNRNP70
CTNSENSG00000040531.10299.05940395.03030-0.401502.208001.77280HepG2SRSF1
CTNSENSG00000040531.10568.56800356.474500.673404.656803.88760HepG2SUCLG1
CTNSENSG00000040531.10250.43570355.08530-0.503703.187302.59160HepG2TAF15
CTNSENSG00000040531.10511.30470359.926900.506403.185602.41350HepG2TARDBP
CTNSENSG00000040531.10577.80110344.870900.744403.019801.90710HepG2TBRG4
CTNSENSG00000040531.10283.38180174.652300.698202.920301.89710HepG2TFIP11
CTNSENSG00000040531.10356.25280227.883000.644504.591703.98190HepG2TIAL1
CTNSENSG00000040531.10303.97910229.923600.402702.303601.77950HepG2TRIM56
CTNSENSG00000040531.10448.97580310.084600.533903.120102.18740HepG2TUFM
CTNSENSG00000040531.10289.11020153.922700.909305.554304.47150HepG2UCHL5
CTNSENSG00000040531.10603.82390423.941200.510205.396004.47190HepG2UPF1
CTNSENSG00000040531.10583.96370435.752700.422303.524202.35630HepG2UTP18
CTNSENSG00000040531.10680.78100409.298700.733906.354005.50740HepG2UTP3
CTNSENSG00000040531.10273.28580351.31850-0.362402.119601.51990HepG2ZC3H8
CTNSENSG00000040531.10643.39590466.254200.464505.140504.45280HepG2ZNF622
CTNSENSG00000040531.1067.55900153.45500-1.183606.057505.26930K562AGGF1
CTNSENSG00000040531.1092.88770159.67150-0.781503.336702.61860K562AKAP8L
CTNSENSG00000040531.10114.77500167.52360-0.545602.269201.44980K562ATP5C1
CTNSENSG00000040531.10215.21150125.173500.781703.601902.60790K562BOP1
CTNSENSG00000040531.10263.14730372.36370-0.500802.584601.64160K562CELF1
CTNSENSG00000040531.10106.5487064.218800.730302.347101.39080K562DDX3X
CTNSENSG00000040531.10385.35520235.127600.712606.396705.46390K562DDX47
CTNSENSG00000040531.10117.51720171.85190-0.548302.396201.58860K562DKC1
CTNSENSG00000040531.10122.5490068.586800.837303.212302.35710K562EIF3G
CTNSENSG00000040531.10148.6632067.095801.147705.828004.64360K562EIF4A3
CTNSENSG00000040531.10202.07230135.427300.577302.177501.41600K562FMR1
CTNSENSG00000040531.10177.90960114.792300.632002.305201.47480K562FTO
CTNSENSG00000040531.10197.5270069.777301.5011011.096809.97070K562FXR1
CTNSENSG00000040531.10225.24460127.061900.825904.298303.31410K562GPKOW
CTNSENSG00000040531.10469.15810348.061600.430602.396201.69060K562GRSF1
CTNSENSG00000040531.10306.57400212.477200.528802.915001.82700K562HNRNPL
CTNSENSG00000040531.1093.23880169.47030-0.862003.650902.68590K562KIF1C
CTNSENSG00000040531.10131.3025074.550700.816503.375502.44100K562MAGOH
CTNSENSG00000040531.10104.28710162.20940-0.637302.365101.39670K562MAK16
CTNSENSG00000040531.10126.46650189.84690-0.586102.333501.51000K562MBNL1
CTNSENSG00000040531.1067.42440133.06730-0.980803.179902.22170K562NAA15
CTNSENSG00000040531.10143.1682072.436400.982804.788603.93730K562PTBP1
CTNSENSG00000040531.10504.28640330.489600.609504.656203.60070K562PUF60
CTNSENSG00000040531.10104.44440158.38910-0.600701.998401.52230K562PUS1
CTNSENSG00000040531.1091.00970154.29420-0.761603.197502.56760K562RBM15
CTNSENSG00000040531.10143.9353069.416401.052005.062503.88640K562RBM22
CTNSENSG00000040531.10137.0454073.059400.907403.749202.45520K562NELFE
CTNSENSG00000040531.10192.80960129.303300.576302.034301.33990K562RPS19
CTNSENSG00000040531.10143.5086077.620200.886502.710101.71770K562RPS3
CTNSENSG00000040531.10161.94410252.81170-0.642602.924601.63440K562STAU1
CTNSENSG00000040531.10267.87070195.711600.452702.121601.40120K562SYNCRIP
CTNSENSG00000040531.10168.4190071.858801.228706.903405.73590K562TARDBP
CTNSENSG00000040531.10415.54200257.117100.692506.331905.29710K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTNS is not available on ENCORE database.





4 RBPs can affect the splicing of CTNS :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTNSENSG00000040531.10chr17+3552140355222535507373550816355829135583820.355000.000160.00561includedHepG2SRSF1
SECTNSENSG00000040531.10chr17+3552140355222535507373550816355829135583820.355000.000540.02991includedHepG2PCBP1
SECTNSENSG00000040531.10chr17+3552140355222535507373550816355829135583820.326000.001880.09656includedHepG2SRSF9
MXECTNSENSG00000040531.10chr17+35404003540610354348135435613539761354012535507373550816-0.317000.005070.078352includedHepG2SRSF1
MXECTNSENSG00000040531.10chr17+35434813543561355829135583953540400354061035585143558646-0.299000.004500.085912includedHepG2TIAL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTNS is not avaliable on ENCORE database.