CTDP1

General Information

Gene Name       : CTDP1
Gene ID             : ENSG00000060069.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTDP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CTDP1ENSG00000060069.161.174.052.61ENCSR000AEF
HepG2CTDP1ENSG00000060069.1610.223.116.67ENCSR985KAT
K562CTDP1ENSG00000060069.165.132.703.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTDP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTDP1 RNA is bound by 12 proteins.  







eCLIP assay for CTDP1 is not avaliable on ENCORE database.





12 proteins are bound to CTDP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr187751388177513947+3'-UTR4.324284.96821K562PUM2
chr187743987077439961+5'-UTR,CDS5.786978.97384HepG2DDX3X
chr187746490977464960+CDS,intron-Proximal4.183716.23016HepG2PRPF8
chr187747297077473125+CDS,intron-Proximal3.367074.74886HepG2BCLAF1
chr187747032777470394+CDS,intron-Proximal3.435094.95320HepG2U2AF2
chr187747798677478053+CDS,intron-Proximal4.548758.47952HepG2PRPF8
chr187744002077440085+CDS3.812794.82666HepG2DDX3X
chr187745265877452733+intron-Distal4.294074.70434HepG2RBFOX2
chr187745374977453822+intron-Distal3.194373.69530HepG2CSTF2T
chr187749125777491363+intron-Distal5.082396.52312K562SLTM
chr187745271077452819+intron-Distal4.027316.26465HepG2CSTF2T
chr187749341477493523+intron-Distal3.849495.33662K562SLTM
chr187749501577495159+intron-Distal4.455644.72743K562NONO
chr187745126377451409+intron-Distal3.505787.68837HepG2CSTF2T
chr187749343777493500+intron-Distal3.801933.30664K562NONO
chr187745306377453123+intron-Distal4.195534.61649HepG2CSTF2T
chr187744490377445002+intron-Distal4.579155.68226HepG2HNRNPM
chr187749073277490783+intron-Distal4.541155.09502K562SLTM
chr187749136377491420+intron-Distal4.347644.42400K562SLTM
chr187745214577452202+intron-Distal3.624215.34749HepG2FAM120A
chr187745214777452212+intron-Distal4.756376.94957HepG2CSTF2T
chr187748254277482643+intron-Distal4.374553.62366HepG2HNRNPM
chr187749118277491377+intron-Distal4.518825.10133HepG2SLTM
chr187745227277452344+intron-Distal4.034563.69819HepG2CSTF2T
chr187749626077496345+intron-Distal,intron-Proximal3.865595.34167HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTDP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTDP1 is not available on ENCORE database.

  • 68 RBPs can affect the levels of CTDP1.  








The Knockdown/knockout RNA-Seq assay for CTDP1 is not available on ENCORE database.





68 RBPs can affect the gene expression of CTDP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTDP1ENSG00000060069.12556.77280424.642700.390703.274502.62210HepG2ACO1
CTDP1ENSG00000060069.12600.54360273.950201.1323010.170409.21680HepG2AKAP1
CTDP1ENSG00000060069.12404.72990260.937600.633204.655603.86040HepG2CELF1
CTDP1ENSG00000060069.12132.64010210.43030-0.665802.663301.76830HepG2DDX24
CTDP1ENSG00000060069.12571.58100262.372301.1232011.2143010.03340HepG2DDX3X
CTDP1ENSG00000060069.12357.34250225.503900.664103.457402.77430HepG2DDX6
CTDP1ENSG00000060069.12221.94130148.361500.581003.240202.54430HepG2DNAJC2
CTDP1ENSG00000060069.12102.75640197.99310-0.946204.407802.99650HepG2AGO1
CTDP1ENSG00000060069.12364.60920216.662600.750803.808903.12070HepG2EIF2S1
CTDP1ENSG00000060069.12362.25730233.180300.635502.025201.43140HepG2EIF4B
CTDP1ENSG00000060069.12256.99370172.894300.571702.957701.74460HepG2FAM120A
CTDP1ENSG00000060069.12489.20830241.699401.017109.081107.89240HepG2FXR1
CTDP1ENSG00000060069.12249.48460172.185500.534902.323501.51020HepG2GEMIN5
CTDP1ENSG00000060069.12331.61730227.156400.545702.301801.66090HepG2HNRNPK
CTDP1ENSG00000060069.12369.23830227.779700.696804.137403.32670HepG2IGF2BP2
CTDP1ENSG00000060069.12368.02750213.893500.782802.449301.53060HepG2IGF2BP3
CTDP1ENSG00000060069.12524.42530241.784501.1169010.880009.60460HepG2MAGOH
CTDP1ENSG00000060069.12586.36310243.109301.2701012.9172011.62770HepG2MATR3
CTDP1ENSG00000060069.12465.28260248.812700.902903.419402.71890HepG2NCBP2
CTDP1ENSG00000060069.12426.82120278.321400.616804.358303.40180HepG2NOL12
CTDP1ENSG00000060069.12385.11340219.178800.813103.216002.03060HepG2NONO
CTDP1ENSG00000060069.12343.56360242.746300.501003.254302.60560HepG2PCBP1
CTDP1ENSG00000060069.12422.09440247.003600.772907.332406.52560HepG2PTBP1
CTDP1ENSG00000060069.12375.50720265.650500.499202.455101.88900HepG2PUF60
CTDP1ENSG00000060069.12504.64030281.779800.840603.481902.73390HepG2PUM2
CTDP1ENSG00000060069.12270.52320503.82770-0.897209.538008.07850HepG2RBM15
CTDP1ENSG00000060069.12567.97880462.208200.297201.831601.38740HepG2RBM22
CTDP1ENSG00000060069.12300.74370200.035300.588202.499101.56080HepG2RBM27
CTDP1ENSG00000060069.12527.54180274.891200.9403011.2091010.25890HepG2NELFE
CTDP1ENSG00000060069.12325.21240188.205500.789005.396504.57060HepG2RPS19
CTDP1ENSG00000060069.12354.11700184.476600.940706.418205.23010HepG2RPS2
CTDP1ENSG00000060069.12304.83740188.320200.694803.581102.35070HepG2RPS5
CTDP1ENSG00000060069.12285.99970148.716300.943404.029903.27740HepG2SAFB2
CTDP1ENSG00000060069.12806.01710496.924200.697705.143704.20530HepG2SF3A3
CTDP1ENSG00000060069.12397.41640257.162400.627904.807104.06090HepG2SF3B4
CTDP1ENSG00000060069.12267.31750173.433500.624104.091903.33550HepG2SMN1
CTDP1ENSG00000060069.12304.30460186.626400.705302.414501.52360HepG2SMNDC1
CTDP1ENSG00000060069.12746.84530522.049300.516505.994205.33480HepG2SRFBP1
CTDP1ENSG00000060069.12199.17700268.42200-0.430501.881101.46960HepG2SRSF1
CTDP1ENSG00000060069.12471.09270262.246900.845008.842207.80600HepG2SRSF5
CTDP1ENSG00000060069.12322.82360453.26620-0.489603.898903.31340HepG2SSB
CTDP1ENSG00000060069.12289.17600164.760500.811504.686403.21960HepG2STIP1
CTDP1ENSG00000060069.12443.63700298.284900.572603.587002.89650HepG2SUCLG1
CTDP1ENSG00000060069.12124.72560241.26840-0.951906.301405.51400HepG2TAF15
CTDP1ENSG00000060069.12253.25360159.159100.670003.080402.03080HepG2TFIP11
CTDP1ENSG00000060069.12279.67170162.283000.785105.156604.51800HepG2TIAL1
CTDP1ENSG00000060069.12288.05230163.712600.815106.545705.74360HepG2TRIM56
CTDP1ENSG00000060069.12529.11320360.560700.553203.039402.38240HepG2U2AF1
CTDP1ENSG00000060069.12530.45020425.474500.318002.174301.63010HepG2UTP3
CTDP1ENSG00000060069.12590.44770484.681000.284702.183501.68090HepG2ZNF622
CTDP1ENSG00000060069.12340.83650246.593400.466802.639201.68550K562AKAP8
CTDP1ENSG00000060069.12353.30120233.498700.597403.824603.05430K562AKAP8L
CTDP1ENSG00000060069.12738.82100395.753400.900505.813805.01690K562AQR
CTDP1ENSG00000060069.12237.16910154.053000.622402.877901.89910K562BCLAF1
CTDP1ENSG00000060069.12512.21960407.905400.328402.212001.61910K562DDX47
CTDP1ENSG00000060069.12219.36660136.833200.680802.871501.94190K562EFTUD2
CTDP1ENSG00000060069.12149.3372083.535800.838003.414502.53730K562EIF3G
CTDP1ENSG00000060069.12259.34560183.493700.499002.419901.65140K562EIF4A3
CTDP1ENSG00000060069.12317.27990230.140800.463102.265101.49760K562FIP1L1
CTDP1ENSG00000060069.12314.37200190.827100.720105.242504.44710K562FXR1
CTDP1ENSG00000060069.12199.90570106.512200.908203.711902.45700K562IGF2BP2
CTDP1ENSG00000060069.12188.97980108.297600.803103.965702.48330K562IGF2BP3
CTDP1ENSG00000060069.12269.82580111.841801.2705011.266909.49050K562MAGOH
CTDP1ENSG00000060069.12163.37670111.599900.549802.147201.34500K562MATR3
CTDP1ENSG00000060069.12198.8600099.493500.999005.379304.00470K562PCBP2
CTDP1ENSG00000060069.12248.71400133.156200.901303.326702.50200K562PRPF8
CTDP1ENSG00000060069.12245.95030108.668601.178309.615908.43260K562PTBP1
CTDP1ENSG00000060069.12362.80090539.09910-0.571404.804403.36710K562PUM1
CTDP1ENSG00000060069.12204.60410104.146500.974105.833604.55330K562RBM22
CTDP1ENSG00000060069.12164.93470101.564100.699402.775301.39710K562RBM34
CTDP1ENSG00000060069.12193.81270109.610100.822204.174302.79840K562NELFE
CTDP1ENSG00000060069.12156.8290091.133400.783002.461101.52250K562RPS3
CTDP1ENSG00000060069.12118.9135064.407200.884503.491702.52670K562SF3B4
CTDP1ENSG00000060069.12158.27160106.542500.570901.947401.34190K562SRSF1
CTDP1ENSG00000060069.12155.30730100.648700.625702.353901.39760K562SRSF5
CTDP1ENSG00000060069.12247.51510107.804201.199006.784405.63410K562TARDBP
CTDP1ENSG00000060069.12187.61940103.995600.851204.337603.27820K562TIA1
CTDP1ENSG00000060069.12172.93780102.106900.760103.262402.05860K562TRA2A
CTDP1ENSG00000060069.12433.88470571.42170-0.397203.039001.56170K562UBE2L3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTDP1 is not available on ENCORE database.





11 RBPs can affect the splicing of CTDP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECTDP1ENSG00000060069.12chr18+774889067748906977477809774780167749635477496521-0.471000.001330.04630excludedK562PRPF8
SECTDP1ENSG00000060069.12chr18+774889067748906977477809774780167749635477496521-0.447000.000010.00016excludedK562AQR
SECTDP1ENSG00000060069.12chr18+7748890677489069774778097747801677496354774965210.265000.000060.00767includedHepG2FTO
SECTDP1ENSG00000060069.12chr18+774889067748906977477809774780167749635477496521-0.455000.001290.06166excludedK562EFTUD2
SECTDP1ENSG00000060069.12chr18+7749635477496521774889067748906977513651775145100.305000.000730.03393includedHepG2MATR3
SECTDP1ENSG00000060069.12chr18+774889067748906977477809774780167749635477496521-0.353000.000000.00000excludedHepG2SF3A3
SECTDP1ENSG00000060069.12chr18+774889067748906977477809774780167749635477496521-0.288000.005030.09352excludedK562AGGF1
SECTDP1ENSG00000060069.12chr18+774889067748906977477809774780167749635477496521-0.638000.000270.01707excludedK562HNRNPK
A5SSCTDP1ENSG00000060069.12chr18+7745785977458054774578597745798877464766774649170.182000.000030.00077longerK562AQR
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.317000.000500.016692includedHepG2MATR3
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.268000.000220.012242includedK562AGGF1
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.577000.004950.065652includedK562SRSF1
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.246000.009760.062142includedK562AQR
MXECTDP1ENSG00000060069.12chr18+77477809774780167748890677489069774744907747552877496354774965210.372000.000000.000001includedHepG2SF3A3
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.176000.000060.004082includedHepG2SF3A3
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.479000.000280.014042includedHepG2HNRNPC
MXECTDP1ENSG00000060069.12chr18+7748890677489069774963547749652177477809774780167751365177514503-0.294000.002700.093142includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CTDP1 is not avaliable on ENCORE database.